pycom07g19120

Protein YIPF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009035
Physical Location & Seq
Reverse (-)
21464331 .. 21467639
3309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19120.1

Sequence Viewer

Length: 819 bp
ATGGATGAGTCCTACGCTGGCCTCGCCACGAGCCATTTGCTCGGCTCAGTCCCTGCTGTTACCGAAAATAAAGAAAAGAATACCACAAGTTATGAAGCACCTAACGCGAATTTGCAAATCTTTCCGCCAAATAGTAATGGAGGAGAGAAAGGGGGCGGTTATCAAACTGTTGGAAGTACAAGTGAAACATTTGAGCAACAACCAGCAAACAACTGGAGGGGAGTATTTAATATCGCATCATACACACAATACTTCAATGTGGATACAGACGTTATCTTAACCAGATTGCTTAGTTCTTTATATCCCCATACTGGAGATTTTTTCAGCAAAATTGATGCCAACCCTGATCTATATGGGCTAATCTGGATTTCCACTACGTTGGTGTTTGTGCTTGCTGCACTTGGTAACTGTGCCACCTACCTCATGGACAAGCGCACAGATAGCAGTACCTCTTGGGTATTCAATGTCAGTTATATGAGTTTGGCAGCCTATTCAGTCTATGGTTATGCAATTCTGGTGCCATTGGCATTCTATTTCTTGATACAGTATCTGGGCACCGCAAATGCCAGCCTAGTTCGGTATTGGTGTATGTGGGGATACTCTCTCTTCATTTTCGTTGCAGCCTCTTTTCTGCTGCTTATCCCAGTTGAGGCTCTTCGGTGGATCATTATAGTTCTCGTTGGTGGGTATTCTGCTTGCTTTGTTGCCTTCAATCTCAGGTCCAATATGGAGGGGAGTGATTTTTCACTTGTGGTGGTTGCTGCATTTCTCTTGCAACTGGCCCTGGCAATCTTCTTTAAGGTCTACTTCTTTCCATGA

Protein Analysis

273

Amino Acids

30.16

Weight (kDa)

4.81

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 100 - 265 1.6e-14 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 517, 554
AccI GTMKAC 1 cut(s) 804
AccII CGCG 1 cut(s) 107
AciI CCGC 3 cut(s) 125, 156, 558
AclWI GGATC 1 cut(s) 671
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 2 cut(s) 178, 448
AfiI CCNNNNNNNGG 2 cut(s) 311, 649
AgsI TTSAA 3 cut(s) 256, 463, 712
AjnI CCWGG 1 cut(s) 783
AlwI GGATC 1 cut(s) 671
AlwNI CAGNNNCTG 2 cut(s) 53, 550
AoxI GGCC 2 cut(s) 19, 780
ApeKI GCWGC 5 cut(s) 395, 485, 620, 634, 761
ApoI RAATTY 1 cut(s) 109
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 720, 781
AvaII GGWCC 1 cut(s) 720
BaeGI GKGCMC 1 cut(s) 557
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BanI GGYRCC 2 cut(s) 517, 554
BauI CACGAG 1 cut(s) 28
BbvI GCAGC 5 cut(s) 382, 497, 621, 632, 748
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BciT130I CCWGG 1 cut(s) 785
BciVI GTATCC 2 cut(s) 256, 590
BfaI CTAG 1 cut(s) 572
BfuI GTATCC 2 cut(s) 256, 590
BisI GCNGC 5 cut(s) 396, 486, 621, 635, 762
BlsI GCNGC 5 cut(s) 397, 487, 622, 636, 763
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 1 cut(s) 720
BmgT120I GGNCC 2 cut(s) 720, 781
BmiI GGNNCC 2 cut(s) 519, 556
BmrFI CCNGG 1 cut(s) 785
BmrI ACTGGG 1 cut(s) 638
BmsI GCATC 2 cut(s) 245, 325
BmuI ACTGGG 1 cut(s) 638
BpmI CTGGAG 2 cut(s) 235, 333
BsaJI CCNNGG 1 cut(s) 783
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 649
Bse1I ACTGG 4 cut(s) 218, 316, 644, 783
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 1 cut(s) 783
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 311, 649
BseMII CTCAG 2 cut(s) 60, 730
BseNI ACTGG 4 cut(s) 218, 316, 644, 783
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 5 cut(s) 382, 497, 621, 632, 748
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 21, 782
BshNI GGYRCC 2 cut(s) 517, 554
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 311, 649
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 2 cut(s) 21, 782
Bsp1286I GDGCHC 1 cut(s) 557
Bsp143I GATC 2 cut(s) 346, 663
BspACI CCGC 3 cut(s) 125, 156, 558
BspANI GGCC 2 cut(s) 21, 782
BspCNI CTCAG 2 cut(s) 59, 729
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 519, 556
BspPI GGATC 1 cut(s) 671
BspQI GCTCTTC 1 cut(s) 660
BspT107I GGYRCC 2 cut(s) 517, 554
BsrI ACTGG 4 cut(s) 218, 316, 644, 783
BssECI CCNNGG 1 cut(s) 783
BssMI GATC 2 cut(s) 346, 663
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 3 cut(s) 169, 410, 546
Bst6I CTCTTC 2 cut(s) 611, 660
BstC8I GCNNGC 4 cut(s) 19, 393, 568, 697
BstDEI CTNAG 3 cut(s) 46, 290, 716
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 2 cut(s) 349, 666
BstMBI GATC 2 cut(s) 346, 663
BstMWI GCNNNNNNNGC 3 cut(s) 23, 104, 441
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 557
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 5 cut(s) 382, 497, 621, 632, 748
BstXI CCANNNNNNTGG 1 cut(s) 379
BsuI GTATCC 2 cut(s) 256, 590
BsuRI GGCC 2 cut(s) 21, 782
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 4 cut(s) 19, 393, 568, 697
CaiI CAGNNNCTG 2 cut(s) 53, 550
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 720, 781
Csp6I GTAC 2 cut(s) 177, 447
CviAII CATG 2 cut(s) 424, 816
CviJI RGCY 9 cut(s) 21, 33, 45, 358, 488, 570, 623, 653, 782
CviKI_1 RGCY 9 cut(s) 21, 33, 45, 358, 488, 570, 623, 653, 782
CviQI GTAC 2 cut(s) 177, 447
DdeI CTNAG 3 cut(s) 46, 290, 716
DpnI GATC 2 cut(s) 348, 665
DpnII GATC 2 cut(s) 346, 663
Eam1104I CTCTTC 2 cut(s) 611, 660
EarI CTCTTC 2 cut(s) 611, 660
EciI GGCGGA 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 783
FaeI CATG 2 cut(s) 427, 819
FalI AAGNNNNNCTT 1 cut(s) 791
FaqI GGGAC 1 cut(s) 35
FatI CATG 2 cut(s) 423, 815
FblI GTMKAC 1 cut(s) 804
Fnu4HI GCNGC 5 cut(s) 396, 486, 621, 635, 762
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 5 cut(s) 396, 486, 621, 635, 762
FspBI CTAG 1 cut(s) 572
GlaI GCGC 1 cut(s) 434
GluI GCNGC 5 cut(s) 396, 486, 621, 635, 762
GsuI CTGGAG 2 cut(s) 235, 333
HaeIII GGCC 2 cut(s) 21, 782
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 427, 819
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 805
Hpy188III TCNNGA 2 cut(s) 364, 538
Hpy8I GTNNAC 1 cut(s) 805
HpyAV CCTTC 1 cut(s) 718
HpyCH4III ACNGT 3 cut(s) 169, 410, 546
HpyCH4IV ACGT 2 cut(s) 270, 377
HpyCH4V TGCA 6 cut(s) 115, 398, 509, 620, 764, 775
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 104, 441
HpyF3I CTNAG 3 cut(s) 46, 290, 716
HpySE526I ACGT 2 cut(s) 270, 377
Hsp92II CATG 2 cut(s) 427, 819
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 2 cut(s) 346, 663
LguI GCTCTTC 1 cut(s) 660
Lsp1109I GCAGC 5 cut(s) 382, 497, 621, 632, 748
LweI GCATC 2 cut(s) 245, 325
MaeI CTAG 1 cut(s) 572
MaeII ACGT 2 cut(s) 270, 377
MaeIII GTNAC 2 cut(s) 58, 404
MalI GATC 2 cut(s) 348, 665
MboI GATC 2 cut(s) 346, 663
MboII GAAGA 3 cut(s) 598, 647, 784
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 3 cut(s) 109, 330, 510
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 8 cut(s) 32, 134, 210, 431, 460, 634, 643, 724
MseI TTAA 3 cut(s) 228, 278, 798
MspR9I CCNGG 1 cut(s) 785
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 23, 104, 441
NdeII GATC 2 cut(s) 346, 663
NlaIII CATG 2 cut(s) 427, 819
NlaIV GGNNCC 2 cut(s) 519, 556
NmeAIII GCCGAG 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 660
PctI GAATGC 1 cut(s) 527
PkrI GCNGC 5 cut(s) 397, 487, 622, 636, 763
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 783
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 2 cut(s) 519, 556
PspPI GGNCC 2 cut(s) 720, 781
PstNI CAGNNNCTG 2 cut(s) 53, 550
RsaI GTAC 2 cut(s) 178, 448
RsaNI GTAC 2 cut(s) 177, 447
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 3 cut(s) 228, 278, 798
SatI GCNGC 5 cut(s) 396, 486, 621, 635, 762
Sau3AI GATC 2 cut(s) 346, 663
Sau96I GGNCC 2 cut(s) 720, 781
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 1 cut(s) 557
SetI ASST 8 cut(s) 103, 273, 380, 419, 423, 452, 722, 804
SfaNI GCATC 2 cut(s) 245, 325
SinI GGWCC 1 cut(s) 720
Sse9I AATT 3 cut(s) 109, 330, 510
SsiI CCGC 3 cut(s) 125, 156, 558
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 783
TaaI ACNGT 3 cut(s) 169, 410, 546
TaiI ACGT 2 cut(s) 273, 380
TasI AATT 3 cut(s) 109, 330, 510
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 3 cut(s) 228, 278, 798
Tru9I TTAA 3 cut(s) 228, 278, 798
TseI GCWGC 5 cut(s) 395, 485, 620, 634, 761
TspDTI ATGAA 2 cut(s) 108, 598
VpaK11BI GGWCC 1 cut(s) 720
XapI RAATTY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 2 cut(s) 210, 421
XmiI GTMKAC 1 cut(s) 804
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.