AT2G40740
WRKY Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010870
Physical Location & Seq
Forward (+)
16997078 .. 16999499
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40740.3

Sequence Viewer

Length: 879 bp
ATGTACTCGTACAAAAAAATAAGTTACCAGATGGAAGAGGTAATGTCAATGATCTTCCACGGAATGAAACTAGTTAAATCGCTCGAGTCCAGCTTACCGGAAAAGCCACCGGAATCTCTATTGACATCTCTTGACGAGATCGTAAAGACATTCAGTGATGCAAACGAGCGGCTGAAGATGTTACTAGAGATTAAGAACTCCGAGACTGCGTTAAACAAAACCAAACCGGTGATTGTGTCCGTTGCAAACCAGATGTTGATGCAGATGGAACCGGGTCTGATGCAAGAGTATTGGTTAAGGTATGGCGGGTCCACGTCGTCTCAAGGAACGGAGGCCATGTTCCAGACGCAGCTCATGGCCGTTGATGGTGGTGGAGAAAGGAATTTGACGGCTGCAGTAGAAAGATCCGGCGCTAGCGGTTCCTCCACGCCAAGGCAGCGGAGAAGGAAGGACGAAGGAGAAGAACAAACGGTGTTGGTGGCGGCGCTAAGGACGGGGAACACAGATCTGCCACCCGACGATAACCATACTTGGCGTAAATACGGTCAAAAAGAAATTCTTGGCTCTAGGTTTCCTAGGGCGTACTATAGGTGCACCCACCAAAAGCTATACAATTGCCCGGCCAAGAAACAAGTCCAACGCCTTAACGACGATCCCTTCACCTTCCGGGTCACATACCGTGGCTCACACACTTGCTACAACTCAACCGCTCCAACCGCATCCTCTGCCACTCCAAGTACCATTCCAATCTCATCCGTCACCACTGGTCATTCTGTTGACTACGGTCTTGCTGTCGTTGACATGGCTGATGTTATGTTTGGTAGCGGCGGGGTCGGAACCAACATGGATTTCATATTTCCTAAAAACGATCCATCTTAA

Protein Analysis

292

Amino Acids

32.49

Weight (kDa)

7.69

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 182 - 241 1.5e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40740 AT2G40740 AT2G40740 AT3G56390
fragaria_vesca FvH4_7g26020
malus_domestica MD01G1168500.v1.1 MD07G1234600.v1.1
prunus_persica Prupe.2G264900_v2.0.a1
pyrus_communis pycom01g18150 pycom07g21220
rosa_chinensis RchiOBHm_Chr1g0372431
rosa_laevigata RLG00000026899
rosa_multiflora Rmu_sc0001755.1_g000002
rosa_roxburghii Rroxscaffold_4G00284930
rosa_rugosa Rorug01G0371800
rosa_samantha Rh1AG380300 Rh1BG343900 Rh1CG357300 Rh1DG375100
rosa_wichuraiana Rw1G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 169, 710
AciI CCGC 9 cut(s) 169, 306, 417, 439, 482, 708, 717, 825, 828
AclWI GGATC 3 cut(s) 399, 647, 863
AcoI YGGCCR 2 cut(s) 357, 621
AcsI RAATTY 2 cut(s) 382, 555
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 4 cut(s) 5, 11, 584, 739
AfiI CCNNNNNNNGG 1 cut(s) 432
AgeI ACCGGT 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 70
AjiI CACGTC 1 cut(s) 315
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
AluBI AGCT 3 cut(s) 93, 352, 607
AluI AGCT 3 cut(s) 93, 352, 607
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 2 cut(s) 197, 324
Alw44I GTGCAC 1 cut(s) 592
AlwI GGATC 3 cut(s) 399, 647, 863
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 3 cut(s) 333, 357, 621
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 349, 392, 436
ApoI RAATTY 2 cut(s) 382, 555
AsiGI ACCGGT 1 cut(s) 226
AspA2I CCTAGG 1 cut(s) 575
AspLEI GCGC 2 cut(s) 413, 487
AspS9I GGNCC 1 cut(s) 309
AsuC2I CCSGG 3 cut(s) 273, 620, 668
AsuHPI GGTGA 3 cut(s) 241, 652, 751
AsuNHI GCTAGC 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 309
AvrII CCTAGG 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 596
Bbv12I GWGCWC 1 cut(s) 596
BbvI GCAGC 3 cut(s) 361, 379, 448
BccI CCATC 3 cut(s) 25, 259, 359
BceAI ACGGC 2 cut(s) 344, 405
BcnI CCSGG 3 cut(s) 273, 620, 668
BcoDI GTCTC 2 cut(s) 197, 324
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 5 cut(s) 71, 185, 414, 567, 576
BfmI CTRYAG 2 cut(s) 393, 586
BfoI RGCGCY 2 cut(s) 414, 488
BglII AGATCT 1 cut(s) 505
BisI GCNGC 6 cut(s) 170, 350, 393, 437, 483, 826
BlnI CCTAGG 1 cut(s) 575
BlsI GCNGC 6 cut(s) 171, 351, 394, 438, 484, 827
Bme1390I CCNGG 3 cut(s) 273, 620, 668
Bme18I GGWCC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 4 cut(s) 270, 310, 421, 838
BmrFI CCNGG 3 cut(s) 273, 620, 668
BmsI GCATC 4 cut(s) 148, 249, 270, 728
BmtI GCTAGC 1 cut(s) 417
BoxI GACNNNNGTC 1 cut(s) 783
Bpu10I CCTNAGC 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 306
BpuMI CCSGG 3 cut(s) 273, 620, 668
BsaJI CCNNGG 4 cut(s) 58, 431, 575, 679
BsaWI WCCGGW 3 cut(s) 97, 109, 226
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 432
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 769
BseDI CCNNGG 4 cut(s) 58, 431, 575, 679
BseGI GGATG 2 cut(s) 719, 752
BseLI CCNNNNNNNGG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 769
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 3 cut(s) 361, 379, 448
BshFI GGCC 3 cut(s) 335, 359, 623
BshTI ACCGGT 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 596
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 7 cut(s) 98, 110, 227, 272, 408, 620, 667
BslI CCNNNNNNNGG 1 cut(s) 432
BsmAI GTCTC 2 cut(s) 197, 324
BsmBI CGTCTC 1 cut(s) 324
BsnI GGCC 3 cut(s) 335, 359, 623
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 596
Bsp143I GATC 6 cut(s) 51, 138, 404, 505, 652, 868
BspACI CCGC 9 cut(s) 169, 306, 417, 439, 482, 708, 717, 825, 828
BspANI GGCC 3 cut(s) 335, 359, 623
BspLI GGNNCC 4 cut(s) 270, 310, 421, 838
BspMAI CTGCAG 1 cut(s) 397
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 3 cut(s) 399, 647, 863
BsrBI CCGCTC 2 cut(s) 169, 710
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 769
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 4 cut(s) 58, 431, 575, 679
BssMI GATC 6 cut(s) 51, 138, 404, 505, 652, 868
BssT1I CCWWGG 2 cut(s) 431, 575
Bst4CI ACNGT 4 cut(s) 472, 545, 680, 785
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 725
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 1 cut(s) 488
BstDSI CCRYGG 2 cut(s) 58, 679
BstF5I GGATG 2 cut(s) 719, 752
BstH2I RGCGCY 2 cut(s) 414, 488
BstHHI GCGC 2 cut(s) 413, 487
BstKTI GATC 6 cut(s) 54, 141, 407, 508, 655, 871
BstMAI GTCTC 2 cut(s) 197, 324
BstMBI GATC 6 cut(s) 51, 138, 404, 505, 652, 868
BstMWI GCNNNNNNNGC 3 cut(s) 436, 716, 725
BstPAI GACNNNNGTC 1 cut(s) 783
BstSCI CCNGG 3 cut(s) 271, 618, 666
BstSFI CTRYAG 2 cut(s) 393, 586
BstSLI GKGCMC 1 cut(s) 596
BstV1I GCAGC 3 cut(s) 361, 379, 448
BstX2I RGATCY 2 cut(s) 404, 505
BstYI RGATCY 2 cut(s) 404, 505
BsuRI GGCC 3 cut(s) 335, 359, 623
BtgI CCRYGG 2 cut(s) 58, 679
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 2 cut(s) 719, 752
BtsIMutI CAGTG 2 cut(s) 160, 762
Cac8I GCNNGC 1 cut(s) 415
CfoI GCGC 2 cut(s) 413, 487
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 309
CseI GACGC 1 cut(s) 355
Csp6I GTAC 4 cut(s) 4, 10, 583, 738
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 4 cut(s) 337, 355, 802, 844
CviQI GTAC 4 cut(s) 4, 10, 583, 738
DdeI CTNAG 1 cut(s) 488
DpnI GATC 6 cut(s) 53, 140, 406, 507, 654, 870
DpnII GATC 6 cut(s) 51, 138, 404, 505, 652, 868
EaeI YGGCCR 2 cut(s) 357, 621
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 431, 575
Eco47I GGWCC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 431, 575
ErhI CCWWGG 2 cut(s) 431, 575
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 4 cut(s) 340, 358, 805, 847
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FatI CATG 4 cut(s) 336, 354, 801, 843
FauI CCCGC 2 cut(s) 299, 821
Fnu4HI GCNGC 6 cut(s) 170, 350, 393, 437, 483, 826
FokI GGATG 2 cut(s) 706, 739
Fsp4HI GCNGC 6 cut(s) 170, 350, 393, 437, 483, 826
FspBI CTAG 5 cut(s) 71, 185, 414, 567, 576
GlaI GCGC 2 cut(s) 412, 486
GluI GCNGC 6 cut(s) 170, 350, 393, 437, 483, 826
HaeII RGCGCY 2 cut(s) 414, 488
HaeIII GGCC 3 cut(s) 335, 359, 623
HapII CCGG 7 cut(s) 98, 110, 227, 272, 408, 620, 667
HgaI GACGC 1 cut(s) 355
HhaI GCGC 2 cut(s) 413, 487
Hin1II CATG 4 cut(s) 340, 358, 805, 847
Hin6I GCGC 2 cut(s) 411, 485
HinP1I GCGC 2 cut(s) 411, 485
HincII GTYRAC 2 cut(s) 778, 799
HindII GTYRAC 2 cut(s) 778, 799
HinfI GANTC 2 cut(s) 86, 113
HpaII CCGG 7 cut(s) 98, 110, 227, 272, 408, 620, 667
HphI GGTGA 3 cut(s) 241, 652, 751
Hpy166II GTNNAC 4 cut(s) 312, 594, 778, 799
Hpy188I TCNGA 3 cut(s) 202, 279, 836
Hpy188III TCNNGA 2 cut(s) 131, 343
Hpy8I GTNNAC 4 cut(s) 312, 594, 778, 799
Hpy99I CGWCG 3 cut(s) 319, 521, 653
HpyAV CCTTC 5 cut(s) 438, 442, 449, 667, 673
HpyCH4III ACNGT 4 cut(s) 472, 545, 680, 785
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 6 cut(s) 161, 245, 262, 283, 395, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 716, 725
HpyF3I CTNAG 1 cut(s) 488
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 4 cut(s) 340, 358, 805, 847
HspAI GCGC 2 cut(s) 411, 485
Kzo9I GATC 6 cut(s) 51, 138, 404, 505, 652, 868
LmnI GCTCC 1 cut(s) 715
Lsp1109I GCAGC 3 cut(s) 361, 379, 448
LweI GCATC 4 cut(s) 148, 249, 270, 728
MaeI CTAG 5 cut(s) 71, 185, 414, 567, 576
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 4 cut(s) 23, 180, 670, 757
MalI GATC 6 cut(s) 53, 140, 406, 507, 654, 870
MbiI CCGCTC 2 cut(s) 169, 710
MboI GATC 6 cut(s) 51, 138, 404, 505, 652, 868
MboII GAAGA 4 cut(s) 46, 47, 187, 473
MfeI CAATTG 1 cut(s) 613
MflI RGATCY 2 cut(s) 404, 505
MhlI GDGCHC 1 cut(s) 596
MluCI AATT 3 cut(s) 382, 555, 613
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 3 cut(s) 661, 737, 814
MnlI CCTC 4 cut(s) 31, 325, 433, 733
MseI TTAA 6 cut(s) 75, 192, 212, 296, 645, 877
MspA1I CMGCKG 1 cut(s) 439
MspI CCGG 7 cut(s) 98, 110, 227, 272, 408, 620, 667
MspR9I CCNGG 3 cut(s) 273, 620, 668
MunI CAATTG 1 cut(s) 613
MwoI GCNNNNNNNGC 3 cut(s) 436, 716, 725
NciI CCSGG 3 cut(s) 273, 620, 668
NdeII GATC 6 cut(s) 51, 138, 404, 505, 652, 868
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 4 cut(s) 340, 358, 805, 847
NlaIV GGNNCC 4 cut(s) 270, 310, 421, 838
NmuCI GTSAC 2 cut(s) 670, 757
PaeR7I CTCGAG 1 cut(s) 83
PfeI GAWTC 1 cut(s) 113
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 6 cut(s) 171, 351, 394, 438, 484, 827
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 783
PspN4I GGNNCC 4 cut(s) 270, 310, 421, 838
PspPI GGNCC 1 cut(s) 309
PspXI VCTCGAGB 1 cut(s) 83
PstI CTGCAG 1 cut(s) 397
PsuI RGATCY 2 cut(s) 404, 505
RsaI GTAC 4 cut(s) 5, 11, 584, 739
RsaNI GTAC 4 cut(s) 4, 10, 583, 738
SaqAI TTAA 6 cut(s) 75, 192, 212, 296, 645, 877
SatI GCNGC 6 cut(s) 170, 350, 393, 437, 483, 826
Sau3AI GATC 6 cut(s) 51, 138, 404, 505, 652, 868
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 273, 620, 668
SduI GDGCHC 1 cut(s) 596
SetI ASST 9 cut(s) 42, 95, 302, 317, 354, 572, 593, 609, 665
SfaNI GCATC 4 cut(s) 148, 249, 270, 728
SfcI CTRYAG 2 cut(s) 393, 586
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 309
SlaI CTCGAG 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 83, 321
SmoI CTYRAG 2 cut(s) 83, 321
SpeI ACTAGT 1 cut(s) 70
Sse9I AATT 3 cut(s) 382, 555, 613
SsiI CCGC 9 cut(s) 169, 306, 417, 439, 482, 708, 717, 825, 828
SspMI CTAG 5 cut(s) 71, 185, 414, 567, 576
StyD4I CCNGG 3 cut(s) 271, 618, 666
StyI CCWWGG 2 cut(s) 431, 575
TaaI ACNGT 4 cut(s) 472, 545, 680, 785
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 84
TasI AATT 3 cut(s) 382, 555, 613
TatI WGTACW 1 cut(s) 3
TauI GCSGC 3 cut(s) 172, 485, 828
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 6 cut(s) 75, 192, 212, 296, 645, 877
Tru9I TTAA 6 cut(s) 75, 192, 212, 296, 645, 877
TscAI CASTG 2 cut(s) 160, 769
TseFI GTSAC 2 cut(s) 670, 757
TseI GCWGC 3 cut(s) 349, 392, 436
Tsp45I GTSAC 2 cut(s) 670, 757
TspDTI ATGAA 2 cut(s) 80, 841
TspGWI ACGGA 4 cut(s) 75, 229, 344, 745
TspRI CASTG 2 cut(s) 160, 769
VneI GTGCAC 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 2 cut(s) 382, 555
XhoI CTCGAG 1 cut(s) 83
XmaJI CCTAGG 1 cut(s) 575
XspI CTAG 5 cut(s) 71, 185, 414, 567, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.