RchiOBHm_Chr1g0372431
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010870
Physical Location & Seq
Forward (+)
61121206 .. 61123612
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59641

Sequence Viewer

Length: 1047 bp
ATGGATAACATTAGTGAAACCGTTTCTTTAATTCACCGTGGTTGCAACTTGGCTAGAGACCTGGAATCAAACCTTCCCAACTTGCCAAGCCGACCCGAAACCGTTTCGAAATCCTTGGACGAGATAATCAGGGTTTTCGGTGCAGCAAGGGAGAGGCTGCAGAGTAGTAGTGCTGCACAACATGATCCAATGAGTTCATACGTTCATGTAGCGCAGCAGCAGCAGCAGATCGATGCGAGCTTGCACGAATGGCTGAGGTGTAATTACACACAGGCAATGGAGGATCTTCACATCCAAACGCAGCGTTTTGCATCCGAAAAGAGTATTGCTGCTACTCAAACCGATATGAGGGATTCAGGAGCTGACGTACTTCACGGCCAAATCCATCAGGCAATCGTTTCTCATGAACTGAATGCTGCTTCGTCCTCACAAAGCAGACCACGAAGAAGGAGGGACGATGGGGAAATTCGTAAATTGACCGTGCCGGCACCTCGGATCGGGAATACTGAAATCCCACCGGAGGATGGCTTCACGTGGCGAAAATACGGCCAGAAGGAGATCATGGGCTGCAGGTTCCCAAGGGGCTACTATAGGTGTACCCACCAAAAGTTATACAATTGCCCAGCCAAGAAGCAAGTTCAGAGGCTTGACAATGATCCCTTAACATTTGAAGTAATGTACAGAGGTGACCATACATGTCATATGTCGTCCACTGCACCCTCAAGTCTACCACCATCTGATCAAATTAAGCAAGAGACTATGACCCAAACTCATGCGGTAACCACTCAACCCTTAGGAACATGGCTCTCCATGGACTTCAACGCGAGAGGTGGAGGAAGCAGCAGTGGTGGCCGCGGTGATGGTGACGGTGACGGTGTAGGTACATCAATCACGACGACCACTCGTTACGGTAAAGACGTTGAGTTTCCGGTGGTGGATTTGGCTGATGCAATGTTTAATTCAGGGAGCAGCAGCAGTAATAGTATGGATTTTATGTTCACTTCATCTATGGACAGTAAATGGGAGTCCGGGGACAAGAAAAATTGA

Protein Analysis

348

Amino Acids

38.67

Weight (kDa)

6.18

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 174 - 234 2.9e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40740 AT2G40740 AT2G40740 AT3G56390
fragaria_vesca FvH4_7g26020
malus_domestica MD01G1168500.v1.1 MD07G1234600.v1.1
prunus_persica Prupe.2G264900_v2.0.a1
pyrus_communis pycom01g18150 pycom07g21220
rosa_chinensis RchiOBHm_Chr1g0372431
rosa_laevigata RLG00000026899
rosa_multiflora Rmu_sc0001755.1_g000002
rosa_roxburghii Rroxscaffold_4G00284930
rosa_rugosa Rorug01G0371800
rosa_samantha Rh1AG380300 Rh1BG343900 Rh1CG357300 Rh1DG375100
rosa_wichuraiana Rw1G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 561
AccB1I GGYRCC 1 cut(s) 487
AccI GTMKAC 1 cut(s) 727
AccII CGCG 2 cut(s) 824, 855
AciI CCGC 3 cut(s) 776, 853, 855
AclWI GGATC 4 cut(s) 179, 291, 503, 650
AcoI YGGCCR 3 cut(s) 376, 547, 850
AcsI RAATTY 1 cut(s) 465
AcvI CACGTG 1 cut(s) 534
AfaI GTAC 4 cut(s) 369, 598, 680, 883
AfiI CCNNNNNNNGG 4 cut(s) 348, 497, 520, 524
AflIII ACRYGT 1 cut(s) 695
AgsI TTSAA 2 cut(s) 671, 820
AjnI CCWGG 1 cut(s) 60
AloI GAACNNNNNNTCC 2 cut(s) 980, 1012
AluBI AGCT 2 cut(s) 240, 362
AluI AGCT 2 cut(s) 240, 362
Alw26I GTCTC 2 cut(s) 51, 749
AlwI GGATC 4 cut(s) 179, 291, 503, 650
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 3 cut(s) 376, 547, 850
ApoI RAATTY 1 cut(s) 465
AspLEI GCGC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 1030
AsuHPI GGTGA 5 cut(s) 26, 698, 869, 875, 881
AsuII TTCGAA 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 793
BanI GGYRCC 1 cut(s) 487
BbrPI CACGTG 1 cut(s) 534
BbvCI CCTCAGC 1 cut(s) 254
BccI CCATC 5 cut(s) 393, 452, 518, 742, 854
BceAI ACGGC 2 cut(s) 391, 562
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 1 cut(s) 1030
BcoDI GTCTC 2 cut(s) 51, 749
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 3 cut(s) 158, 568, 589
BfuAI ACCTGC 1 cut(s) 561
Bme1390I CCNGG 2 cut(s) 62, 1030
BmiI GGNNCC 2 cut(s) 489, 575
BmrFI CCNGG 2 cut(s) 62, 1030
BmsI GCATC 3 cut(s) 223, 320, 937
Bpu10I CCTNAGC 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 706
BpuMI CCSGG 1 cut(s) 1030
Bsa29I ATCGAT 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 534
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 7 cut(s) 37, 114, 491, 578, 810, 853, 1029
BsaWI WCCGGW 2 cut(s) 517, 928
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 497, 520, 524
Bse118I RCCGGY 1 cut(s) 484
Bse21I CCTNAGG 1 cut(s) 793
Bse3DI GCAATG 2 cut(s) 282, 957
BseBI CCWGG 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 7 cut(s) 37, 114, 491, 578, 810, 853, 1029
BseGI GGATG 3 cut(s) 291, 311, 529
BseLI CCNNNNNNNGG 4 cut(s) 348, 497, 520, 524
BseMI GCAATG 2 cut(s) 282, 957
BseMII CTCAG 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 622
BsgI GTGCAG 3 cut(s) 159, 162, 699
Bsh1236I CGCG 2 cut(s) 824, 855
BshFI GGCC 3 cut(s) 378, 549, 852
BshNI GGYRCC 1 cut(s) 487
BshVI ATCGAT 1 cut(s) 231
BsiSI CCGG 4 cut(s) 485, 518, 929, 1029
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 4 cut(s) 348, 497, 520, 524
BsmAI GTCTC 2 cut(s) 51, 749
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 3 cut(s) 378, 549, 852
Bso31I GGTCTC 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 7 cut(s) 184, 228, 283, 495, 558, 655, 739
Bsp19I CCATGG 1 cut(s) 810
BspACI CCGC 3 cut(s) 776, 853, 855
BspANI GGCC 3 cut(s) 378, 549, 852
BspCNI CTCAG 1 cut(s) 246
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 2 cut(s) 824, 855
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 489, 575
BspMAI CTGCAG 2 cut(s) 162, 572
BspMI ACCTGC 1 cut(s) 561
BspPI GGATC 4 cut(s) 179, 291, 503, 650
BspT104I TTCGAA 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 2 cut(s) 282, 957
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 678
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 7 cut(s) 37, 114, 491, 578, 810, 853, 1029
BssMI GATC 7 cut(s) 184, 228, 283, 495, 558, 655, 739
BssT1I CCWWGG 3 cut(s) 114, 578, 810
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 8 cut(s) 22, 38, 103, 481, 869, 875, 911, 1016
BstAUI TGTACA 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 534
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 238, 242, 486
BstDEI CTNAG 2 cut(s) 254, 793
BstDSI CCRYGG 3 cut(s) 37, 810, 853
BstEII GGTNACC 2 cut(s) 686, 778
BstF5I GGATG 3 cut(s) 291, 311, 529
BstFNI CGCG 2 cut(s) 824, 855
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 7 cut(s) 187, 231, 286, 498, 561, 658, 742
BstMAI GTCTC 2 cut(s) 51, 749
BstMBI GATC 7 cut(s) 184, 228, 283, 495, 558, 655, 739
BstMWI GCNNNNNNNGC 4 cut(s) 220, 223, 250, 849
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 699
BstPI GGTNACC 2 cut(s) 686, 778
BstSCI CCNGG 2 cut(s) 60, 1028
BstSFI CTRYAG 3 cut(s) 158, 568, 589
BstUI CGCG 2 cut(s) 824, 855
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
Bsu15I ATCGAT 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 793
BsuRI GGCC 3 cut(s) 378, 549, 852
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 3 cut(s) 37, 810, 853
BtsCI GGATG 3 cut(s) 291, 311, 529
BtsI GCAGTG 2 cut(s) 711, 850
BtsIMutI CAGTG 2 cut(s) 711, 850
BveI ACCTGC 1 cut(s) 561
Cac8I GCNNGC 3 cut(s) 238, 242, 486
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 1 cut(s) 403
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 484
Cfr42I CCGCGG 1 cut(s) 856
ClaI ATCGAT 1 cut(s) 231
Csp6I GTAC 4 cut(s) 368, 597, 679, 882
CviAII CATG 8 cut(s) 182, 206, 404, 562, 696, 773, 801, 811
CviQI GTAC 4 cut(s) 368, 597, 679, 882
DdeI CTNAG 2 cut(s) 254, 793
DpnI GATC 7 cut(s) 186, 230, 285, 497, 560, 657, 741
DpnII GATC 7 cut(s) 184, 228, 283, 495, 558, 655, 739
EaeI YGGCCR 3 cut(s) 376, 547, 850
Eco130I CCWWGG 3 cut(s) 114, 578, 810
Eco31I GGTCTC 1 cut(s) 51
Eco72I CACGTG 1 cut(s) 534
Eco81I CCTNAGG 1 cut(s) 793
Eco91I GGTNACC 2 cut(s) 686, 778
EcoO65I GGTNACC 2 cut(s) 686, 778
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 3 cut(s) 114, 578, 810
ErhI CCWWGG 3 cut(s) 114, 578, 810
FaeI CATG 8 cut(s) 185, 209, 407, 565, 699, 776, 804, 814
FaqI GGGAC 1 cut(s) 467
FatI CATG 8 cut(s) 181, 205, 403, 561, 695, 772, 800, 810
FauNDI CATATG 1 cut(s) 702
FbaI TGATCA 1 cut(s) 739
FblI GTMKAC 1 cut(s) 727
FokI GGATG 3 cut(s) 278, 298, 536
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 626
HaeIII GGCC 3 cut(s) 378, 549, 852
HapII CCGG 4 cut(s) 485, 518, 929, 1029
HhaI GCGC 1 cut(s) 214
Hin1II CATG 8 cut(s) 185, 209, 407, 565, 699, 776, 804, 814
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 3 cut(s) 65, 353, 1025
HpaII CCGG 4 cut(s) 485, 518, 929, 1029
HphI GGTGA 5 cut(s) 26, 698, 869, 875, 881
Hpy166II GTNNAC 4 cut(s) 597, 711, 728, 999
Hpy188I TCNGA 4 cut(s) 316, 495, 642, 739
Hpy188III TCNNGA 4 cut(s) 357, 404, 499, 892
Hpy8I GTNNAC 4 cut(s) 597, 711, 728, 999
Hpy99I CGWCG 1 cut(s) 898
HpyAV CCTTC 3 cut(s) 83, 441, 547
HpyCH4III ACNGT 8 cut(s) 22, 38, 103, 481, 869, 875, 911, 1016
HpyCH4IV ACGT 4 cut(s) 201, 366, 533, 918
HpyCH4V TGCA 9 cut(s) 45, 143, 160, 176, 244, 311, 570, 716, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 223, 250, 849
HpyF3I CTNAG 2 cut(s) 254, 793
HpySE526I ACGT 4 cut(s) 201, 366, 533, 918
Hsp92II CATG 8 cut(s) 185, 209, 407, 565, 699, 776, 804, 814
HspAI GCGC 1 cut(s) 212
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
Ksp22I TGATCA 1 cut(s) 739
KspI CCGCGG 1 cut(s) 856
Kzo9I GATC 7 cut(s) 184, 228, 283, 495, 558, 655, 739
LmnI GCTCC 2 cut(s) 359, 966
LweI GCATC 3 cut(s) 223, 320, 937
MaeI CTAG 1 cut(s) 54
MaeII ACGT 4 cut(s) 201, 366, 533, 918
MaeIII GTNAC 5 cut(s) 686, 778, 863, 869, 905
MalI GATC 7 cut(s) 186, 230, 285, 497, 560, 657, 741
MboI GATC 7 cut(s) 184, 228, 283, 495, 558, 655, 739
MboII GAAGA 2 cut(s) 278, 456
MfeI CAATTG 1 cut(s) 616
MflI RGATCY 1 cut(s) 283
MluCI AATT 8 cut(s) 30, 262, 465, 473, 616, 744, 958, 1042
MlyI GAGTC 1 cut(s) 1034
MroNI GCCGGC 1 cut(s) 484
MseI TTAA 4 cut(s) 29, 662, 747, 957
MspA1I CMGCKG 1 cut(s) 855
MspI CCGG 4 cut(s) 485, 518, 929, 1029
MspR9I CCNGG 2 cut(s) 62, 1030
MunI CAATTG 1 cut(s) 616
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 2 cut(s) 824, 855
MwoI GCNNNNNNNGC 4 cut(s) 220, 223, 250, 849
NaeI GCCGGC 1 cut(s) 486
NciI CCSGG 1 cut(s) 1030
NcoI CCATGG 1 cut(s) 810
NdeI CATATG 1 cut(s) 702
NdeII GATC 7 cut(s) 184, 228, 283, 495, 558, 655, 739
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 8 cut(s) 185, 209, 407, 565, 699, 776, 804, 814
NlaIV GGNNCC 2 cut(s) 489, 575
NmuCI GTSAC 3 cut(s) 686, 863, 869
NspI RCATGY 1 cut(s) 699
NspV TTCGAA 1 cut(s) 107
PagI TCATGA 1 cut(s) 403
PciI ACATGT 1 cut(s) 695
PcsI WCGNNNNNNNCGW 1 cut(s) 915
PctI GAATGC 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 65, 353
PleI GAGTC 1 cut(s) 1033
PmaCI CACGTG 1 cut(s) 534
PmlI CACGTG 1 cut(s) 534
PpsI GAGTC 1 cut(s) 1033
Ppu21I YACGTR 1 cut(s) 534
PscI ACATGT 1 cut(s) 695
Psp6I CCWGG 1 cut(s) 60
PspCI CACGTG 1 cut(s) 534
PspEI GGTNACC 2 cut(s) 686, 778
PspFI CCCAGC 1 cut(s) 622
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 489, 575
PstI CTGCAG 2 cut(s) 162, 572
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 4 cut(s) 369, 598, 680, 883
RsaNI GTAC 4 cut(s) 368, 597, 679, 882
SacII CCGCGG 1 cut(s) 856
SaqAI TTAA 4 cut(s) 29, 662, 747, 957
Sau3AI GATC 7 cut(s) 184, 228, 283, 495, 558, 655, 739
SchI GAGTC 1 cut(s) 1034
ScrFI CCNGG 2 cut(s) 62, 1030
SfaNI GCATC 3 cut(s) 223, 320, 937
SfcI CTRYAG 3 cut(s) 158, 568, 589
Sfr303I CCGCGG 1 cut(s) 856
SfuI TTCGAA 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 856
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
Sse9I AATT 8 cut(s) 30, 262, 465, 473, 616, 744, 958, 1042
SsiI CCGC 3 cut(s) 776, 853, 855
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 60, 1028
StyI CCWWGG 3 cut(s) 114, 578, 810
TaaI ACNGT 8 cut(s) 22, 38, 103, 481, 869, 875, 911, 1016
TaiI ACGT 4 cut(s) 204, 369, 536, 921
TaqI TCGA 2 cut(s) 107, 231
TasI AATT 8 cut(s) 30, 262, 465, 473, 616, 744, 958, 1042
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 855
TfiI GAWTC 2 cut(s) 65, 353
Tru1I TTAA 4 cut(s) 29, 662, 747, 957
Tru9I TTAA 4 cut(s) 29, 662, 747, 957
TscAI CASTG 2 cut(s) 718, 850
TseFI GTSAC 3 cut(s) 686, 863, 869
Tsp45I GTSAC 3 cut(s) 686, 863, 869
TspDTI ATGAA 4 cut(s) 186, 194, 420, 993
TspRI CASTG 2 cut(s) 718, 850
XapI RAATTY 1 cut(s) 465
XceI RCATGY 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 727
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.