Rorug01G0371800
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
48558286 .. 48561622
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0371800.1

Sequence Viewer

Length: 1113 bp
ATGAGCATAGACAGTTCTATGCCTGTAATGGCGTCCACAAACGAAAAAGAAGAAAACTTCTGCTATGCGATGCAGCTGGTGACTTCTACTGTGCTGCCCATGTCCATGAAATTAGCAGTTGAGCTTGCAGTTTTCGACATCATAGCCAAAGCTGGTGGGGGTGCTGGTCTCTCCTCATCCCAGATTGCAGCTCAGATAGGCACCGAGAACCCCGAGGCGCCCATGATGTTGGATCGGATCCTCAGGCTACTGGCAAGCCACTCTGTGCTCAAGTGTACTGTAGTTAATGCTAATGATGATGATCATGGTGATAGAACTAATTTTCAGAGGGTTTATAGTCTTGCTCCTGTGTCCAAGTACTTTGTGAAGAGTGATGAAGATGGTGTTTCTCTAGGCGCTCTGATGGCTTTGAATCAAGACAAGGTCCTCTTGGACAGCTGGTTCCAGTTGAAAGGTGCTGTTGTTGAAGGAGGAATCCCATTTAACAGGGCCAATGGCACACATGCCTTTGAGTATCCAGGTTTGGACGCCAGGTATAACCAATTGTTCAACACAGCAATGTTCGACCACACCACTATTGTTACCAAGAAAATTCTTGATATCTACAAGGGTTTTGAGCACCTTAAGCAACTTGTTGATGTTGGGGGTGGCCTTGGAGTGACTCTTAGCCTAATCACTTCTAGATATCCTGATATTAAGGGCATCAACTTTGACTTGCCTCATGTCATCAAAGATGCCCCTTCTTACACCGGAGTGGACCATGTTGGAGGAGACATGTTCGCAAGTGTTCCAAGTGGGGATGCCATTTTTATTAAGTGGATACTTCATAACTGGAGTGATGAGCGCTGCTTGAAGCTCCTGAAAAATTGTTACAGTGCTATACCAGACAATGGAAAAGTAATTGTTGTGGAAGAACTTCTTCCAGTTGTGCCAGAGACCAGCACTGCTGTGAAGAGCACCTCGCAAATGGATGTGCTTATGATGACACATTGCCCGAGAGGGAAAGAGCGAAGTGAACAAGAATTCCTAGCCTTGGCAATTGCTGCTGGGTTTCGCGGCATCAGATATGAATGTTTTGTCTGTAATTTTTGGGTTATGGAGTTCTTTAAGTAG

Protein Analysis

370

Amino Acids

40.74

Weight (kDa)

5.41

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 24 - 124 4.9e-19 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 147 - 352 8.1e-63 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 200, 217
AccB7I CCANNNNNTGG 1 cut(s) 890
AccII CGCG 1 cut(s) 1056
AciI CCGC 1 cut(s) 1056
AclWI GGATC 3 cut(s) 232, 240, 245
AcsI RAATTY 2 cut(s) 591, 1022
AcyI GRCGYC 3 cut(s) 32, 218, 528
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 2 cut(s) 277, 359
AfeI AGCGCT 1 cut(s) 845
AfiI CCNNNNNNNGG 2 cut(s) 890, 1033
AflII CTTAAG 1 cut(s) 623
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 5 cut(s) 412, 451, 467, 550, 853
AjnI CCWGG 2 cut(s) 517, 530
AleI CACNNNNGTG 2 cut(s) 752, 947
AloI GAACNNNNNNTCC 4 cut(s) 425, 457, 1008, 1040
AluBI AGCT 6 cut(s) 76, 124, 152, 191, 438, 856
AluI AGCT 6 cut(s) 76, 124, 152, 191, 438, 856
Alw21I GWGCWC 3 cut(s) 270, 621, 959
Alw26I GTCTC 3 cut(s) 173, 765, 929
AlwI GGATC 3 cut(s) 232, 240, 245
Ama87I CYCGRG 2 cut(s) 212, 994
Aor51HI AGCGCT 1 cut(s) 845
AoxI GGCC 2 cut(s) 489, 649
ApeKI GCWGC 5 cut(s) 73, 94, 188, 846, 1043
ApoI RAATTY 2 cut(s) 591, 1022
Asp700I GAANNNNTTC 2 cut(s) 915, 918
AspLEI GCGC 3 cut(s) 220, 398, 846
AspS9I GGNCC 3 cut(s) 424, 489, 757
AsuHPI GGTGA 2 cut(s) 91, 320
AvaI CYCGRG 2 cut(s) 212, 994
AvaII GGWCC 2 cut(s) 424, 757
AxyI CCTNAGG 1 cut(s) 242
BamHI GGATCC 1 cut(s) 237
BanI GGYRCC 2 cut(s) 200, 217
Bbv12I GWGCWC 3 cut(s) 270, 621, 959
BbvI GCAGC 5 cut(s) 81, 85, 200, 833, 1030
BccI CCATC 2 cut(s) 374, 397
BciT130I CCWGG 2 cut(s) 519, 532
BciVI GTATCC 2 cut(s) 525, 813
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 173, 765, 929
BfaI CTAG 3 cut(s) 392, 681, 1028
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 3 cut(s) 221, 399, 847
BfrI CTTAAG 1 cut(s) 623
BfuI GTATCC 2 cut(s) 525, 813
BisI GCNGC 6 cut(s) 74, 95, 189, 847, 1044, 1057
BlsI GCNGC 6 cut(s) 75, 96, 190, 848, 1045, 1058
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 519, 532
Bme18I GGWCC 2 cut(s) 424, 757
BmeT110I CYCGRG 2 cut(s) 212, 994
BmgT120I GGNCC 3 cut(s) 424, 489, 757
BmiI GGNNCC 4 cut(s) 202, 219, 239, 443
BmrFI CCNGG 2 cut(s) 519, 532
BmsI GCATC 5 cut(s) 60, 711, 724, 790, 1068
BpmI CTGGAG 1 cut(s) 853
BpuEI CTTGAG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 300
BsaHI GRCGYC 3 cut(s) 32, 218, 528
BsaI GGTCTC 2 cut(s) 173, 929
BsaJI CCNNGG 3 cut(s) 213, 652, 1032
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 2 cut(s) 890, 1033
Bse1I ACTGG 4 cut(s) 255, 445, 836, 923
Bse21I CCTNAGG 1 cut(s) 242
Bse3DI GCAATG 2 cut(s) 564, 988
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 2 cut(s) 519, 532
BseDI CCNNGG 3 cut(s) 213, 652, 1032
BseGI GGATG 3 cut(s) 176, 805, 976
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 890, 1033
BseMI GCAATG 2 cut(s) 564, 988
BseMII CTCAG 2 cut(s) 206, 256
BseNI ACTGG 4 cut(s) 255, 445, 836, 923
BseRI GAGGAG 2 cut(s) 163, 783
BseXI GCAGC 5 cut(s) 81, 85, 200, 833, 1030
BseYI CCCAGC 1 cut(s) 1046
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 2 cut(s) 491, 651
BshNI GGYRCC 2 cut(s) 200, 217
BsiHKAI GWGCWC 3 cut(s) 270, 621, 959
BsiHKCI CYCGRG 2 cut(s) 212, 994
BsiSI CCGG 1 cut(s) 750
BslI CCNNNNNNNGG 2 cut(s) 890, 1033
BsmAI GTCTC 3 cut(s) 173, 765, 929
BsnI GGCC 2 cut(s) 491, 651
Bso31I GGTCTC 2 cut(s) 173, 929
BsoBI CYCGRG 2 cut(s) 212, 994
Bsp1286I GDGCHC 3 cut(s) 270, 621, 959
Bsp143I GATC 3 cut(s) 232, 237, 301
BspACI CCGC 1 cut(s) 1056
BspANI GGCC 2 cut(s) 491, 651
BspCNI CTCAG 2 cut(s) 205, 255
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 4 cut(s) 202, 219, 239, 443
BspPI GGATC 3 cut(s) 232, 240, 245
BspQI GCTCTTC 1 cut(s) 947
BspT107I GGYRCC 2 cut(s) 200, 217
BspTI CTTAAG 1 cut(s) 623
BspTNI GGTCTC 2 cut(s) 173, 929
BsrDI GCAATG 2 cut(s) 564, 988
BsrI ACTGG 4 cut(s) 255, 445, 836, 923
BssECI CCNNGG 3 cut(s) 213, 652, 1032
BssMI GATC 3 cut(s) 232, 237, 301
BssNI GRCGYC 3 cut(s) 32, 218, 528
BssT1I CCWWGG 2 cut(s) 652, 1032
Bst2UI CCWGG 2 cut(s) 519, 532
Bst4CI ACNGT 4 cut(s) 14, 91, 280, 875
Bst6I CTCTTC 2 cut(s) 362, 947
BstACI GRCGYC 3 cut(s) 32, 218, 528
BstAFI CTTAAG 1 cut(s) 623
BstAPI GCANNNNNTGC 1 cut(s) 1043
BstC8I GCNNGC 2 cut(s) 126, 256
BstDEI CTNAG 3 cut(s) 192, 242, 665
BstF5I GGATG 3 cut(s) 176, 805, 976
BstFNI CGCG 1 cut(s) 1056
BstH2I RGCGCY 3 cut(s) 221, 399, 847
BstHHI GCGC 3 cut(s) 220, 398, 846
BstKTI GATC 3 cut(s) 235, 240, 304
BstMAI GTCTC 3 cut(s) 173, 765, 929
BstMBI GATC 3 cut(s) 232, 237, 301
BstMWI GCNNNNNNNGC 3 cut(s) 404, 625, 1043
BstNI CCWGG 2 cut(s) 519, 532
BstNSI RCATGY 2 cut(s) 506, 778
BstSCI CCNGG 2 cut(s) 517, 530
BstSFI CTRYAG 1 cut(s) 279
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 5 cut(s) 81, 85, 200, 833, 1030
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 242
BsuI GTATCC 2 cut(s) 525, 813
BsuRI GGCC 2 cut(s) 491, 651
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 3 cut(s) 176, 805, 976
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 2 cut(s) 880, 942
Cac8I GCNNGC 2 cut(s) 126, 256
CfoI GCGC 3 cut(s) 220, 398, 846
Cfr13I GGNCC 3 cut(s) 424, 489, 757
CseI GACGC 2 cut(s) 21, 536
Csp6I GTAC 2 cut(s) 276, 358
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 8 cut(s) 100, 106, 223, 305, 503, 722, 761, 775
CviQI GTAC 2 cut(s) 276, 358
DdeI CTNAG 3 cut(s) 192, 242, 665
DinI GGCGCC 1 cut(s) 219
DpnI GATC 3 cut(s) 234, 239, 303
DpnII GATC 3 cut(s) 232, 237, 301
DraIII CACNNNGTG 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 362, 947
EarI CTCTTC 2 cut(s) 362, 947
Eco130I CCWWGG 2 cut(s) 652, 1032
Eco31I GGTCTC 2 cut(s) 173, 929
Eco32I GATATC 2 cut(s) 601, 686
Eco47I GGWCC 2 cut(s) 424, 757
Eco47III AGCGCT 1 cut(s) 845
Eco81I CCTNAGG 1 cut(s) 242
Eco88I CYCGRG 2 cut(s) 212, 994
EcoO109I RGGNCCY 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 1022
EcoRII CCWGG 2 cut(s) 517, 530
EcoRV GATATC 2 cut(s) 601, 686
EcoT14I CCWWGG 2 cut(s) 652, 1032
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
ErhI CCWWGG 2 cut(s) 652, 1032
FaeI CATG 8 cut(s) 103, 109, 226, 308, 506, 725, 764, 778
FalI AAGNNNNNCTT 4 cut(s) 413, 445, 903, 935
FatI CATG 8 cut(s) 99, 105, 222, 304, 502, 721, 760, 774
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 6 cut(s) 74, 95, 189, 847, 1044, 1057
FokI GGATG 3 cut(s) 163, 812, 983
Fsp4HI GCNGC 6 cut(s) 74, 95, 189, 847, 1044, 1057
FspBI CTAG 3 cut(s) 392, 681, 1028
GlaI GCGC 3 cut(s) 219, 397, 845
GluI GCNGC 6 cut(s) 74, 95, 189, 847, 1044, 1057
GsaI CCCAGC 1 cut(s) 1050
GsuI CTGGAG 1 cut(s) 853
HaeII RGCGCY 3 cut(s) 221, 399, 847
HaeIII GGCC 2 cut(s) 491, 651
HapII CCGG 1 cut(s) 750
HgaI GACGC 2 cut(s) 21, 536
HhaI GCGC 3 cut(s) 220, 398, 846
Hin1I GRCGYC 3 cut(s) 32, 218, 528
Hin1II CATG 8 cut(s) 103, 109, 226, 308, 506, 725, 764, 778
Hin6I GCGC 3 cut(s) 218, 396, 844
HinP1I GCGC 3 cut(s) 218, 396, 844
HinfI GANTC 3 cut(s) 412, 474, 661
HpaII CCGG 1 cut(s) 750
HphI GGTGA 2 cut(s) 91, 320
Hpy166II GTNNAC 4 cut(s) 36, 276, 757, 1016
Hpy188I TCNGA 5 cut(s) 195, 237, 327, 402, 1064
Hpy188III TCNNGA 5 cut(s) 416, 596, 681, 689, 859
Hpy8I GTNNAC 4 cut(s) 36, 276, 757, 1016
HpyAV CCTTC 2 cut(s) 461, 750
HpyCH4III ACNGT 4 cut(s) 14, 91, 280, 875
HpyCH4V TGCA 3 cut(s) 73, 128, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 625, 1043
HpyF3I CTNAG 3 cut(s) 192, 242, 665
Hsp92I GRCGYC 3 cut(s) 32, 218, 528
Hsp92II CATG 8 cut(s) 103, 109, 226, 308, 506, 725, 764, 778
HspAI GCGC 3 cut(s) 218, 396, 844
KasI GGCGCC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 232, 237, 301
LguI GCTCTTC 1 cut(s) 947
LmnI GCTCC 2 cut(s) 349, 861
Lsp1109I GCAGC 5 cut(s) 81, 85, 200, 833, 1030
LweI GCATC 5 cut(s) 60, 711, 724, 790, 1068
MaeI CTAG 3 cut(s) 392, 681, 1028
MaeIII GTNAC 4 cut(s) 79, 580, 658, 869
MalI GATC 3 cut(s) 234, 239, 303
MboI GATC 3 cut(s) 232, 237, 301
MboII GAAGA 6 cut(s) 62, 379, 389, 911, 923, 964
MfeI CAATTG 2 cut(s) 542, 1038
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 3 cut(s) 270, 621, 959
MluCI AATT 9 cut(s) 110, 319, 542, 591, 865, 900, 1022, 1038, 1084
Mly113I GGCGCC 1 cut(s) 218
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 2 cut(s) 210, 745
MroXI GAANNNNTTC 2 cut(s) 915, 918
MseI TTAA 6 cut(s) 285, 483, 624, 696, 813, 1107
MslI CAYNNNNRTG 4 cut(s) 104, 557, 752, 947
MspA1I CMGCKG 2 cut(s) 76, 438
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 1 cut(s) 750
MspR9I CCNGG 2 cut(s) 519, 532
MunI CAATTG 2 cut(s) 542, 1038
MvaI CCWGG 2 cut(s) 519, 532
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 3 cut(s) 404, 625, 1043
NarI GGCGCC 1 cut(s) 218
NdeII GATC 3 cut(s) 232, 237, 301
NlaIII CATG 8 cut(s) 103, 109, 226, 308, 506, 725, 764, 778
NlaIV GGNNCC 4 cut(s) 202, 219, 239, 443
NmuCI GTSAC 2 cut(s) 79, 658
NspI RCATGY 2 cut(s) 506, 778
OliI CACNNNNGTG 2 cut(s) 752, 947
PciI ACATGT 1 cut(s) 774
PciSI GCTCTTC 1 cut(s) 947
PdmI GAANNNNTTC 2 cut(s) 915, 918
PfeI GAWTC 2 cut(s) 412, 474
PflFI GACNNNGTC 1 cut(s) 422
PflMI CCANNNNNTGG 1 cut(s) 890
PkrI GCNGC 6 cut(s) 75, 96, 190, 848, 1045, 1058
PleI GAGTC 1 cut(s) 655
PluTI GGCGCC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 655
PpuMI RGGWCCY 1 cut(s) 424
PscI ACATGT 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 517, 530
PspFI CCCAGC 1 cut(s) 1046
PspGI CCWGG 2 cut(s) 517, 530
PspN4I GGNNCC 4 cut(s) 202, 219, 239, 443
PspPI GGNCC 3 cut(s) 424, 489, 757
PspPPI RGGWCCY 1 cut(s) 424
PsuI RGATCY 1 cut(s) 237
PsyI GACNNNGTC 1 cut(s) 422
PvuII CAGCTG 2 cut(s) 76, 438
RsaI GTAC 2 cut(s) 277, 359
RsaNI GTAC 2 cut(s) 276, 358
RseI CAYNNNNRTG 4 cut(s) 104, 557, 752, 947
SapI GCTCTTC 1 cut(s) 947
SaqAI TTAA 6 cut(s) 285, 483, 624, 696, 813, 1107
SatI GCNGC 6 cut(s) 74, 95, 189, 847, 1044, 1057
Sau3AI GATC 3 cut(s) 232, 237, 301
Sau96I GGNCC 3 cut(s) 424, 489, 757
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 2 cut(s) 519, 532
SduI GDGCHC 3 cut(s) 270, 621, 959
SfaNI GCATC 5 cut(s) 60, 711, 724, 790, 1068
SfcI CTRYAG 1 cut(s) 279
SfoI GGCGCC 1 cut(s) 219
SinI GGWCC 2 cut(s) 424, 757
SmiMI CAYNNNNRTG 4 cut(s) 104, 557, 752, 947
SmlI CTYRAG 2 cut(s) 269, 623
SmoI CTYRAG 2 cut(s) 269, 623
Sse9I AATT 9 cut(s) 110, 319, 542, 591, 865, 900, 1022, 1038, 1084
SsiI CCGC 1 cut(s) 1056
SspDI GGCGCC 1 cut(s) 217
SspMI CTAG 3 cut(s) 392, 681, 1028
StyD4I CCNGG 2 cut(s) 517, 530
StyI CCWWGG 2 cut(s) 652, 1032
TaaI ACNGT 4 cut(s) 14, 91, 280, 875
TaqI TCGA 2 cut(s) 135, 564
TasI AATT 9 cut(s) 110, 319, 542, 591, 865, 900, 1022, 1038, 1084
TatI WGTACW 2 cut(s) 275, 357
TauI GCSGC 1 cut(s) 1059
TfiI GAWTC 2 cut(s) 412, 474
Tru1I TTAA 6 cut(s) 285, 483, 624, 696, 813, 1107
Tru9I TTAA 6 cut(s) 285, 483, 624, 696, 813, 1107
TscAI CASTG 2 cut(s) 880, 949
TseFI GTSAC 2 cut(s) 79, 658
TseI GCWGC 5 cut(s) 73, 94, 188, 846, 1043
Tsp45I GTSAC 2 cut(s) 79, 658
TspDTI ATGAA 4 cut(s) 122, 390, 815, 1083
TspRI CASTG 2 cut(s) 880, 949
Tth111I GACNNNGTC 1 cut(s) 422
Van91I CCANNNNNTGG 1 cut(s) 890
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 2 cut(s) 424, 757
XapI RAATTY 2 cut(s) 591, 1022
XbaI TCTAGA 1 cut(s) 680
XceI RCATGY 2 cut(s) 506, 778
XmnI GAANNNNTTC 2 cut(s) 915, 918
XspI CTAG 3 cut(s) 392, 681, 1028
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.