Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Reverse (-)

60995918 .. 60996667

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035107

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCCATGGTCATAACCAGCCTTGTGGCTAACTATCTCTTCCTGCTTGCTGTGTTCGATTTATCATATGGAGAGCCGCCTTGGCCTGGGGCTTTTCCTTCTTCCTCTATCGATGAGTTGGATTGCTTCCCAGTGCTTCAACTGGAAGATGGTGCTATGGTGGATGATTTGGTTTTCGGACTCTCTGATGAGCGTCCGCTATGGCTGGTTTCGACTTCAAGGCGTAGATTGATGGAAGATCCATCGGTGAGTCAGCTAGTAAGGGTTTTGCCGGAAGTTTTTGCTAGCTCTCGATGGAGGCCAATCAAGGATCGTGAAGGTCGAGGGTTGCCTCGGCTGGAATATTTTCAGGCCGCTGACGTGGGTGAGACTGGTCAGGGAGATCTGATCCGTTTTGCTTCTTATGGCGGCTTGGACGACATCCCACGGGGATACAGTGATGGAGGCTTCTCAGAGGCTGTACGAGCTCTCGATGGAGGAGGCACTGCAGTAGCTGCGCAAGCTCACAGTGCTGATGGCCAAAAATTATTTGGAGAGTTGTTGGACTTGAGATGGACTTTTGTGTCTAAGGATGCTGAGATTGCCGAGGTTAAGGAACTGGAGAAGGAAGCAGGAGTGGAAGGGGAGTCTACTGCTCCTCTTTTGAAAAGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.78

Weight (kDa)

4.41

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	562
Acc16I	TGCGCA	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	629
AciI	CCGC	4 cut(s)	77, 197, 354, 408
AclWI	GGATC	3 cut(s)	233, 318, 382
AcoI	YGGCCR	2 cut(s)	3, 517
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	140, 219, 646
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	5 cut(s)	256, 288, 467, 494, 503
AluI	AGCT	5 cut(s)	256, 288, 467, 494, 503
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	3 cut(s)	233, 318, 382
AlwNI	CAGNNNCTG	2 cut(s)	458, 494
AoxI	GGCC	5 cut(s)	3, 83, 299, 351, 517
ApeKI	GCWGC	1 cut(s)	494
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	259, 377
AsuNHI	GCTAGC	1 cut(s)	284
BalI	TGGCCA	2 cut(s)	5, 519
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	8 cut(s)	143, 226, 250, 288, 434, 467, 509, 546
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	257, 285
BfmI	CTRYAG	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	425
BglI	GCCNNNNNGGC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	4 cut(s)	77, 354, 409, 495
BlsI	GCNGC	4 cut(s)	78, 355, 410, 496
Bme1390I	CCNGG	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	562
BmtI	GCTAGC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	620
BpuEI	CTTGAG	1 cut(s)	568
Bsa29I	ATCGAT	1 cut(s)	111
BsaJI	CCNNGG	6 cut(s)	6, 80, 86, 332, 425, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	4 cut(s)	131, 147, 376, 603
BseBI	CCWGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	6 cut(s)	6, 80, 86, 332, 425, 585
BseGI	GGATG	3 cut(s)	169, 420, 577
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	465, 567
BseNI	ACTGG	4 cut(s)	131, 147, 376, 603
BseRI	GAGGAG	2 cut(s)	492, 627
BseXI	GCAGC	1 cut(s)	481
BshFI	GGCC	5 cut(s)	5, 85, 301, 353, 519
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	5 cut(s)	5, 85, 301, 353, 519
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	238, 310, 382, 387
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	4 cut(s)	77, 197, 354, 408
BspANI	GGCC	5 cut(s)	5, 85, 301, 353, 519
BspCNI	CTCAG	2 cut(s)	464, 568
BspDI	ATCGAT	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	3 cut(s)	233, 318, 382
BsrI	ACTGG	4 cut(s)	131, 147, 376, 603
BssECI	CCNNGG	6 cut(s)	6, 80, 86, 332, 425, 585
BssMI	GATC	4 cut(s)	238, 310, 382, 387
BssT1I	CCWWGG	2 cut(s)	6, 80
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	437, 509
Bst6I	CTCTTC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstC8I	GCNNGC	3 cut(s)	48, 286, 501
BstDEI	CTNAG	3 cut(s)	451, 567, 576
BstDSI	CCRYGG	2 cut(s)	6, 425
BstF5I	GGATG	3 cut(s)	169, 420, 577
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	4 cut(s)	241, 313, 385, 390
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	4 cut(s)	238, 310, 382, 387
BstMWI	GCNNNNNNNGC	6 cut(s)	82, 464, 494, 500, 509, 581
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	2 cut(s)	238, 382
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	2 cut(s)	238, 382
Bsu15I	ATCGAT	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	5 cut(s)	5, 85, 301, 353, 519
BsuTUI	ATCGAT	1 cut(s)	111
BtgI	CCRYGG	2 cut(s)	6, 425
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	169, 420, 577
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	4 cut(s)	138, 442, 483, 514
Cac8I	GCNNGC	3 cut(s)	48, 286, 501
CaiI	CAGNNNCTG	2 cut(s)	458, 494
CfoI	GCGC	1 cut(s)	499
ClaI	ATCGAT	1 cut(s)	111
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	3 cut(s)	451, 567, 576
DpnI	GATC	4 cut(s)	240, 312, 384, 389
DpnII	GATC	4 cut(s)	238, 310, 382, 387
DrdI	GACNNNNNNGTC	1 cut(s)	562
DseDI	GACNNNNNNGTC	1 cut(s)	562
EaeI	YGGCCR	2 cut(s)	3, 517
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	467
Eco130I	CCWWGG	2 cut(s)	6, 80
Eco24I	GRGCYC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	6, 80
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	2 cut(s)	6, 80
FaeI	CATG	1 cut(s)	10
FaiI	YATR	7 cut(s)	8, 14, 67, 69, 158, 202, 405
FatI	CATG	1 cut(s)	6
FauNDI	CATATG	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	629
Fnu4HI	GCNGC	4 cut(s)	77, 354, 409, 495
FokI	GGATG	3 cut(s)	176, 407, 584
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	4 cut(s)	77, 354, 409, 495
FspBI	CTAG	2 cut(s)	257, 285
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	4 cut(s)	77, 354, 409, 495
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	5 cut(s)	5, 85, 301, 353, 519
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	3 cut(s)	180, 250, 626
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	259, 377
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	4 cut(s)	179, 187, 387, 454
Hpy188III	TCNNGA	3 cut(s)	291, 314, 470
Hpy8I	GTNNAC	1 cut(s)	630
HpyAV	CCTTC	4 cut(s)	108, 311, 598, 614
HpyCH4III	ACNGT	2 cut(s)	437, 509
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	6 cut(s)	82, 464, 494, 500, 509, 581
HpyF3I	CTNAG	3 cut(s)	451, 567, 576
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	497
Kzo9I	GATC	4 cut(s)	238, 310, 382, 387
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	2 cut(s)	257, 285
MaeII	ACGT	1 cut(s)	360
MalI	GATC	4 cut(s)	240, 312, 384, 389
MboI	GATC	4 cut(s)	238, 310, 382, 387
MboII	GAAGA	4 cut(s)	31, 93, 158, 248
MflI	RGATCY	2 cut(s)	238, 382
MhlI	GDGCHC	1 cut(s)	469
MlsI	TGGCCA	2 cut(s)	5, 519
MluCI	AATT	1 cut(s)	524
MluNI	TGGCCA	2 cut(s)	5, 519
MlyI	GAGTC	3 cut(s)	174, 259, 635
MmeI	TCCRAC	2 cut(s)	99, 522
Mox20I	TGGCCA	2 cut(s)	5, 519
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	2 cut(s)	5, 519
MseI	TTAA	2 cut(s)	591, 655
Msp20I	TGGCCA	2 cut(s)	5, 519
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	6 cut(s)	82, 464, 494, 500, 509, 581
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	4 cut(s)	238, 310, 382, 387
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	10
NmeAIII	GCCGAG	2 cut(s)	313, 610
NsbI	TGCGCA	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	78, 355, 410, 496
PleI	GAGTC	3 cut(s)	174, 258, 634
PpsI	GAGTC	3 cut(s)	174, 258, 634
Psp124BI	GAGCTC	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	2 cut(s)	458, 494
PsuI	RGATCY	2 cut(s)	238, 382
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	591, 655
SatI	GCNGC	4 cut(s)	77, 354, 409, 495
Sau3AI	GATC	4 cut(s)	238, 310, 382, 387
SchI	GAGTC	3 cut(s)	174, 259, 635
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	469
SetI	ASST	8 cut(s)	258, 290, 322, 363, 469, 496, 505, 591
SfaNI	GCATC	1 cut(s)	562
SfcI	CTRYAG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	4 cut(s)	77, 197, 354, 408
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	2 cut(s)	257, 285
SstI	GAGCTC	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	6, 80
TaaI	ACNGT	2 cut(s)	437, 509
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	6 cut(s)	57, 111, 212, 292, 322, 471
TasI	AATT	1 cut(s)	524
TauI	GCSGC	3 cut(s)	79, 356, 411
Tru1I	TTAA	2 cut(s)	591, 655
Tru9I	TTAA	2 cut(s)	591, 655
TscAI	CASTG	4 cut(s)	138, 442, 490, 514
TseI	GCWGC	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	4 cut(s)	138, 442, 490, 514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XmiI	GTMKAC	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	257, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.