Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Forward (+)

33997952 .. 33998714

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCCAAGGTCATCACTAACCTTGTGGTTCACTGTCTCAACCTGCTGGCTGTGTTCGATTTGTCATCTGGAGAGCCGCCTTGGTCTGAGGCTTCTCTTTCTTCCTCTGTCGCTGCTTTGGGTTGTCTACTGGCGTGTCGACTGGAGGATGGTGTTATGGTGGATGGATTGGTCTTCGGACTTTCCGAGGAGCGTCCGCTATGGCTGGGTTCGTCTCTAGGGCGAAACTTAATGGTAGATCCATCGGTGATTGTTGGGGTTTGGCCGGAAGATTTTGTTGGTTTTGGACAGGGGCTGGCCAGGGACGGTGGAGGTTGGGGATTAAGTTCTCTTCGGGTCGCTGAGATGGGTGAGGCTGGTTGTCGAGATCTGATCCGCCTTGCTTCTGATAGCGGGTGGGACGGCGTTGCTTGGGCACATGGCAGTGGAGGATTCTCAGCTGTGGTGCGTGCTCTCGGTGGCGGAGGCTTAGCAGAGGCGGCAAAGGCTCACTGTGCTGGTGGCCGAAAACTGGTTGGAGATGGTGATTTTGGGTTCCAGAGTTGTTGGACTTGGGCTGGACTTGTGCTCATGGTTGGGGTTGTTGGGCCCGTGTTTGGAAGTTGGGTTCCTTGTGGGCTGGATATTGCACTGCAAGGGTCTCTTTTTGGGCTAAGGCAGATTGAAACTTCTCAATTGGCGCAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

23.65

Weight (kDa)

4.67

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AccI	GTMKAC	2 cut(s)	127, 139
AciI	CCGC	6 cut(s)	77, 197, 376, 393, 462, 479
AclWI	GGATC	2 cut(s)	233, 367
AcoI	YGGCCR	4 cut(s)	3, 263, 297, 502
AfiI	CCNNNNNNNGG	2 cut(s)	511, 596
AgsI	TTSAA	1 cut(s)	665
AjnI	CCWGG	1 cut(s)	299
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AloI	GAACNNNNNNTCC	2 cut(s)	591, 623
AluBI	AGCT	2 cut(s)	440, 685
AluI	AGCT	2 cut(s)	440, 685
Alw21I	GWGCWC	2 cut(s)	454, 570
Alw26I	GTCTC	3 cut(s)	41, 219, 645
AlwI	GGATC	2 cut(s)	233, 367
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	5 cut(s)	3, 263, 297, 502, 587
ApaI	GGGCCC	1 cut(s)	591
ApeKI	GCWGC	2 cut(s)	113, 682
AspLEI	GCGC	1 cut(s)	682
AspS9I	GGNCC	2 cut(s)	587, 588
AsuHPI	GGTGA	3 cut(s)	259, 362, 536
BaeGI	GKGCMC	2 cut(s)	418, 591
BalI	TGGCCA	2 cut(s)	5, 299
BanII	GRGCYC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	2 cut(s)	454, 570
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	5 cut(s)	143, 158, 250, 340, 515
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	301
BcoDI	GTCTC	3 cut(s)	41, 219, 645
BfaI	CTAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	51
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	4 cut(s)	77, 114, 480, 683
BlpI	GCTNAGC	1 cut(s)	469
BlsI	GCNGC	4 cut(s)	78, 115, 481, 684
Bme1390I	CCNGG	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	587, 588
BmiI	GGNNCC	3 cut(s)	536, 589, 609
BmrFI	CCNGG	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	166
BpmI	CTGGAG	2 cut(s)	90, 164
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	469
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	4 cut(s)	6, 80, 186, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 596
Bse1I	ACTGG	3 cut(s)	135, 147, 516
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	4 cut(s)	6, 80, 186, 300
BseGI	GGATG	2 cut(s)	154, 169
BseLI	CCNNNNNNNGG	2 cut(s)	511, 596
BseMII	CTCAG	3 cut(s)	78, 333, 450
BseNI	ACTGG	3 cut(s)	135, 147, 516
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	2 cut(s)	418, 591
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	5 cut(s)	5, 265, 299, 504, 589
BsiHKAI	GWGCWC	2 cut(s)	454, 570
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	2 cut(s)	317, 413
BslI	CCNNNNNNNGG	2 cut(s)	511, 596
BsmAI	GTCTC	3 cut(s)	41, 219, 645
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	317, 413
BsnI	GGCC	5 cut(s)	5, 265, 299, 504, 589
Bso31I	GGTCTC	1 cut(s)	645
Bsp120I	GGGCCC	1 cut(s)	587
Bsp1286I	GDGCHC	4 cut(s)	418, 454, 570, 591
Bsp143I	GATC	3 cut(s)	238, 367, 372
Bsp1720I	GCTNAGC	1 cut(s)	469
BspACI	CCGC	6 cut(s)	77, 197, 376, 393, 462, 479
BspANI	GGCC	5 cut(s)	5, 265, 299, 504, 589
BspCNI	CTCAG	3 cut(s)	79, 334, 449
BspLI	GGNNCC	3 cut(s)	536, 589, 609
BspMI	ACCTGC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	233, 367
BspTNI	GGTCTC	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	135, 147, 516
BssECI	CCNNGG	4 cut(s)	6, 80, 186, 300
BssMI	GATC	3 cut(s)	238, 367, 372
BssT1I	CCWWGG	2 cut(s)	6, 80
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	35, 308, 494
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	48, 297, 450
BstDEI	CTNAG	5 cut(s)	87, 342, 436, 469, 653
BstF5I	GGATG	2 cut(s)	154, 169
BstHHI	GCGC	1 cut(s)	682
BstKTI	GATC	3 cut(s)	241, 370, 375
BstMAI	GTCTC	3 cut(s)	41, 219, 645
BstMBI	GATC	3 cut(s)	238, 367, 372
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 485, 494
BstNI	CCWGG	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	299
BstSLI	GKGCMC	2 cut(s)	418, 591
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	2 cut(s)	238, 367
BstYI	RGATCY	2 cut(s)	238, 367
BsuRI	GGCC	5 cut(s)	5, 265, 299, 504, 589
BtsCI	GGATG	2 cut(s)	154, 169
BtsI	GCAGTG	2 cut(s)	430, 629
BtsIMutI	CAGTG	4 cut(s)	31, 430, 490, 629
BveI	ACCTGC	1 cut(s)	51
Cac8I	GCNNGC	3 cut(s)	48, 297, 450
CaiI	CAGNNNCTG	1 cut(s)	295
CfoI	GCGC	1 cut(s)	682
Cfr13I	GGNCC	2 cut(s)	587, 588
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	419, 571
DdeI	CTNAG	5 cut(s)	87, 342, 436, 469, 653
DpnI	GATC	3 cut(s)	240, 369, 374
DpnII	GATC	3 cut(s)	238, 367, 372
EaeI	YGGCCR	4 cut(s)	3, 263, 297, 502
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	2 cut(s)	365, 477
Eco130I	CCWWGG	2 cut(s)	6, 80
Eco24I	GRGCYC	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	299
EcoT14I	CCWWGG	2 cut(s)	6, 80
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	6, 80
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	2 cut(s)	422, 574
FaiI	YATR	4 cut(s)	158, 202, 420, 572
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	2 cut(s)	317, 413
FatI	CATG	2 cut(s)	418, 570
FauI	CCCGC	1 cut(s)	386
FblI	GTMKAC	2 cut(s)	127, 139
Fnu4HI	GCNGC	4 cut(s)	77, 114, 480, 683
FokI	GGATG	2 cut(s)	161, 176
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	4 cut(s)	77, 114, 480, 683
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	4 cut(s)	77, 114, 480, 683
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	2 cut(s)	90, 164
HaeIII	GGCC	5 cut(s)	5, 265, 299, 504, 589
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	682
Hin1II	CATG	2 cut(s)	422, 574
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	3 cut(s)	259, 362, 536
Hpy166II	GTNNAC	3 cut(s)	31, 128, 140
Hpy188I	TCNGA	6 cut(s)	88, 179, 187, 372, 388, 689
Hpy188III	TCNNGA	3 cut(s)	69, 365, 538
Hpy8I	GTNNAC	3 cut(s)	31, 128, 140
HpyCH4III	ACNGT	3 cut(s)	35, 308, 494
HpyCH4V	TGCA	2 cut(s)	629, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 485, 494
HpyF3I	CTNAG	5 cut(s)	87, 342, 436, 469, 653
Hsp92II	CATG	2 cut(s)	422, 574
HspAI	GCGC	1 cut(s)	680
Kzo9I	GATC	3 cut(s)	238, 367, 372
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	218
MalI	GATC	3 cut(s)	240, 369, 374
MboI	GATC	3 cut(s)	238, 367, 372
MboII	GAAGA	4 cut(s)	93, 166, 281, 323
MfeI	CAATTG	1 cut(s)	674
MflI	RGATCY	2 cut(s)	238, 367
MhlI	GDGCHC	4 cut(s)	418, 454, 570, 591
MlsI	TGGCCA	2 cut(s)	5, 299
MluCI	AATT	1 cut(s)	674
MluNI	TGGCCA	2 cut(s)	5, 299
MmeI	TCCRAC	2 cut(s)	496, 527
MnlI	CCTC	9 cut(s)	82, 115, 139, 181, 305, 346, 422, 458, 469
Mox20I	TGGCCA	2 cut(s)	5, 299
MscI	TGGCCA	2 cut(s)	5, 299
MseI	TTAA	2 cut(s)	230, 323
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	2 cut(s)	5, 299
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	674
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	479, 485, 494
NdeII	GATC	3 cut(s)	238, 367, 372
NlaIII	CATG	2 cut(s)	422, 574
NlaIV	GGNNCC	3 cut(s)	536, 589, 609
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	4 cut(s)	78, 115, 481, 684
Psp6I	CCWGG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	536, 589, 609
PspOMI	GGGCCC	1 cut(s)	587
PspPI	GGNCC	2 cut(s)	587, 588
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	238, 367
PvuII	CAGCTG	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	423
SalI	GTCGAC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	230, 323
SatI	GCNGC	4 cut(s)	77, 114, 480, 683
Sau3AI	GATC	3 cut(s)	238, 367, 372
Sau96I	GGNCC	2 cut(s)	587, 588
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	4 cut(s)	418, 454, 570, 591
SetI	ASST	6 cut(s)	12, 24, 45, 316, 442, 687
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	1 cut(s)	674
SsiI	CCGC	6 cut(s)	77, 197, 376, 393, 462, 479
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	6, 80
TaaI	ACNGT	3 cut(s)	35, 308, 494
TaqI	TCGA	3 cut(s)	57, 139, 364
TasI	AATT	1 cut(s)	674
TauI	GCSGC	2 cut(s)	79, 482
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	2 cut(s)	230, 323
Tru9I	TTAA	2 cut(s)	230, 323
TscAI	CASTG	4 cut(s)	38, 430, 497, 636
TseI	GCWGC	2 cut(s)	113, 682
TspRI	CASTG	4 cut(s)	38, 430, 497, 636
XmiI	GTMKAC	2 cut(s)	127, 139
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.