Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Reverse (-)

14051570 .. 14052153

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTAGGGTCATCATTAGCCTTGTGGCTACCTGTCTTGTTCTACTTGCTGTGTTCGATTTATCATATGGAGAGCCGCCTTGGGCTGGGGCTTGTCTTTCTTCCTCTGACGGCGCTGATTTGTCTAGCTTCCCGGAGTTTCGATGGGAGGATGGTGTTATGGTGGATGGGTGGGTCTTCGAACTCCCCAACGAGCGTCCGTTTTGGCTGGGTTCGATTTTGGGGCGAAGCTTAATGGACGATCCATCAGTGCTCGTTGTTGGTAGGCCGGGAGATTTCGCTGGACCTCCACAGGGGCCGACCAAGGACGGCGGAGATTGGGGGTTGATTTCGATCTTCTTGGCAGCGGTGCAAGCACTCGTTGGTGGAGGTCTTGTAGCGGCGGCGAGGGTTCACGGTGTTGGTAGCCGGAATTTGTTTGGAGGTGGGATTGGGGTGCCCATAGCAGTTTCAATGCATTGGGCTCCTTGGCCTTACTCTGGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

16.97

Weight (kDa)

4.5

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AciI	CCGC	5 cut(s)	77, 312, 347, 380, 383
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	86, 293, 479
AgsI	TTSAA	1 cut(s)	453
AluBI	AGCT	2 cut(s)	129, 231
AluI	AGCT	2 cut(s)	129, 231
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	3 cut(s)	266, 296, 470
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	284, 296
AsuC2I	CCSGG	2 cut(s)	134, 270
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	4 cut(s)	138, 146, 161, 253
BceAI	ACGGC	2 cut(s)	127, 325
BcnI	CCSGG	2 cut(s)	134, 270
BfaI	CTAG	2 cut(s)	6, 126
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	4 cut(s)	77, 345, 381, 384
BlsI	GCNGC	4 cut(s)	78, 346, 382, 385
Bme1390I	CCNGG	2 cut(s)	134, 270
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	284, 296
BmiI	GGNNCC	3 cut(s)	297, 438, 465
BmrFI	CCNGG	2 cut(s)	134, 270
BpiI	GAAGAC	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	180
BpuMI	CCSGG	2 cut(s)	134, 270
BsaBI	GATNNNNATC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	80, 303, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 293, 479
Bse8I	GATNNNNATC	1 cut(s)	332
BseDI	CCNNGG	3 cut(s)	80, 303, 467
BseGI	GGATG	2 cut(s)	157, 172
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	3 cut(s)	86, 293, 479
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	356
BseYI	CCCAGC	2 cut(s)	86, 208
BshFI	GGCC	3 cut(s)	268, 298, 472
BshNI	GGYRCC	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	134, 269, 409
BslI	CCNNNNNNNGG	3 cut(s)	86, 293, 479
BsnI	GGCC	3 cut(s)	268, 298, 472
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	255, 441, 466
Bsp143I	GATC	2 cut(s)	241, 333
BspACI	CCGC	5 cut(s)	77, 312, 347, 380, 383
BspANI	GGCC	3 cut(s)	268, 298, 472
BspLI	GGNNCC	3 cut(s)	297, 438, 465
BspPI	GGATC	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	436
BssECI	CCNNGG	3 cut(s)	80, 303, 467
BssMI	GATC	2 cut(s)	241, 333
BssT1I	CCWWGG	3 cut(s)	80, 303, 467
Bst4CI	ACNGT	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	157, 172
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	244, 336
BstMBI	GATC	2 cut(s)	241, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	132, 268
BstSLI	GKGCMC	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	356
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	268, 298, 472
BtsCI	GGATG	2 cut(s)	157, 172
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	284, 296
CseI	GACGC	1 cut(s)	185
DpnI	GATC	2 cut(s)	243, 335
DpnII	GATC	2 cut(s)	241, 333
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	3 cut(s)	80, 303, 467
Eco24I	GRGCYC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	284
EcoT14I	CCWWGG	3 cut(s)	80, 303, 467
EcoT22I	ATGCAT	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	3 cut(s)	80, 303, 467
FaiI	YATR	5 cut(s)	67, 69, 161, 443, 487
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	77, 345, 381, 384
FokI	GGATG	2 cut(s)	164, 179
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	4 cut(s)	77, 345, 381, 384
FspBI	CTAG	2 cut(s)	6, 126
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	4 cut(s)	77, 345, 381, 384
GsaI	CCCAGC	2 cut(s)	90, 212
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	268, 298, 472
HapII	CCGG	3 cut(s)	134, 269, 409
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	229
HpaII	CCGG	3 cut(s)	134, 269, 409
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	394
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	2 cut(s)	352, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	241, 333
LmnI	GCTCC	1 cut(s)	469
LpnPI	CCDG	9 cut(s)	46, 72, 147, 194, 267, 278, 282, 422, 465
Lsp1109I	GCAGC	1 cut(s)	356
MaeI	CTAG	2 cut(s)	6, 126
MalI	GATC	2 cut(s)	243, 335
MboI	GATC	2 cut(s)	241, 333
MboII	GAAGA	3 cut(s)	93, 169, 328
MhlI	GDGCHC	3 cut(s)	255, 441, 466
MluCI	AATT	1 cut(s)	412
MnlI	CCTC	6 cut(s)	115, 142, 297, 362, 381, 416
Mph1103I	ATGCAT	1 cut(s)	459
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	3 cut(s)	134, 269, 409
MspR9I	CCNGG	2 cut(s)	134, 270
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	2 cut(s)	134, 270
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	2 cut(s)	241, 333
NlaIV	GGNNCC	3 cut(s)	297, 438, 465
NsiI	ATGCAT	1 cut(s)	459
NspV	TTCGAA	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	78, 346, 382, 385
PspFI	CCCAGC	2 cut(s)	86, 208
PspN4I	GGNNCC	3 cut(s)	297, 438, 465
PspPI	GGNCC	2 cut(s)	284, 296
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	4 cut(s)	77, 345, 381, 384
Sau3AI	GATC	2 cut(s)	241, 333
Sau96I	GGNCC	2 cut(s)	284, 296
ScrFI	CCNGG	2 cut(s)	134, 270
SduI	GDGCHC	3 cut(s)	255, 441, 466
SetI	ASST	6 cut(s)	35, 131, 233, 289, 373, 427
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	5 cut(s)	77, 312, 347, 380, 383
SspMI	CTAG	2 cut(s)	6, 126
StyD4I	CCNGG	2 cut(s)	132, 268
StyI	CCWWGG	3 cut(s)	80, 303, 467
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	5 cut(s)	57, 142, 180, 215, 332
TasI	AATT	1 cut(s)	412
TauI	GCSGC	3 cut(s)	79, 383, 386
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	412
XspI	CTAG	2 cut(s)	6, 126
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.