Rroxscaffold_3G00259640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004258
Physical Location & Seq
Reverse (-)
54054676 .. 54059172
4497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259640.1

Sequence Viewer

Length: 372 bp
ATGATCCAAGACCGGGGGACTTCAATTTCGAACTTGGGCAGAGTCCCGGCTTTTCAACTTGGGGAGGGTGATATGGTGGGCGGCTTGTTTTTCGTACTCTCCGAAGAGCGTCCGCTTTGGCTGGATTTGACCTTGGGACATAGCTCAATGGAGGATCCAACCGGGGAATTGACTAGTTGGGGATTTGCTGAAAGAGTTCGTTGGCTTTCGAACGGGGTTGATCAAGGACGAAGGAGGTATAGGGTTAACTCTGCCGCGATCGATTGGGTCGATTATAGGATTGTGACCGGGTGTGGAGATCCGACTCGTTCGCTTTTATTGGAGGTCGGGACGACGCCTCAAGGGGGCACGGTGGTGGAGGCTTCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.54

Weight (kDa)

4.91

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AciI CCGC 3 cut(s) 81, 113, 255
AclWI GGATC 3 cut(s) 149, 162, 293
AcyI GRCGYC 1 cut(s) 335
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 13, 344
AgsI TTSAA 2 cut(s) 24, 56
AhlI ACTAGT 1 cut(s) 173
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
AlwI GGATC 3 cut(s) 149, 162, 293
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
Asp700I GAANNNNTTC 1 cut(s) 195
AsuC2I CCSGG 4 cut(s) 14, 47, 163, 289
AsuHPI GGTGA 1 cut(s) 80
AsuII TTCGAA 2 cut(s) 29, 209
BaeGI GKGCMC 1 cut(s) 350
BamHI GGATCC 1 cut(s) 154
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 4 cut(s) 14, 47, 163, 289
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 1 cut(s) 174
BisI GCNGC 2 cut(s) 82, 255
BlsI GCNGC 2 cut(s) 83, 256
Bme1390I CCNGG 4 cut(s) 14, 47, 163, 289
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 4 cut(s) 14, 47, 163, 289
Bpu14I TTCGAA 2 cut(s) 29, 209
BpuEI CTTGAG 1 cut(s) 324
BpuMI CCSGG 4 cut(s) 14, 47, 163, 289
Bsa29I ATCGAT 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 335
BsaJI CCNNGG 3 cut(s) 13, 132, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 344
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 13, 132, 162
BseLI CCNNNNNNNGG 2 cut(s) 13, 344
BseSI GKGCMC 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 261
BshVI ATCGAT 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 261
BsiSI CCGG 4 cut(s) 13, 47, 162, 288
BslFI GGGAC 4 cut(s) 29, 31, 150, 343
BslI CCNNNNNNNGG 2 cut(s) 13, 344
BsmFI GGGAC 4 cut(s) 29, 31, 150, 343
Bsp119I TTCGAA 2 cut(s) 29, 209
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 5 cut(s) 3, 154, 220, 258, 298
BspACI CCGC 3 cut(s) 81, 113, 255
BspDI ATCGAT 1 cut(s) 261
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 3 cut(s) 149, 162, 293
BspQI GCTCTTC 1 cut(s) 99
BspT104I TTCGAA 2 cut(s) 29, 209
BssECI CCNNGG 3 cut(s) 13, 132, 162
BssMI GATC 5 cut(s) 3, 154, 220, 258, 298
BssNI GRCGYC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 335
BstBI TTCGAA 2 cut(s) 29, 209
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 5 cut(s) 6, 157, 223, 261, 301
BstMBI GATC 5 cut(s) 3, 154, 220, 258, 298
BstMCI CGRYCG 1 cut(s) 261
BstSCI CCNGG 4 cut(s) 12, 45, 161, 287
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 154, 298
BstYI RGATCY 2 cut(s) 154, 298
Bsu15I ATCGAT 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 261
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 2 cut(s) 98, 343
Csp6I GTAC 1 cut(s) 95
CviJI RGCY 6 cut(s) 50, 84, 121, 144, 205, 362
CviKI_1 RGCY 6 cut(s) 50, 84, 121, 144, 205, 362
CviQI GTAC 1 cut(s) 95
DpnI GATC 5 cut(s) 5, 156, 222, 260, 300
DpnII GATC 5 cut(s) 3, 154, 220, 258, 298
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaiI YATR 4 cut(s) 74, 141, 240, 276
FaqI GGGAC 4 cut(s) 29, 31, 150, 343
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 82, 255
Fsp4HI GCNGC 2 cut(s) 82, 255
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 82, 255
HapII CCGG 4 cut(s) 13, 47, 162, 288
HgaI GACGC 2 cut(s) 98, 343
Hin1I GRCGYC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 42, 304
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 4 cut(s) 13, 47, 162, 288
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 103, 303
Hpy188III TCNNGA 1 cut(s) 328
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 352
Hsp92I GRCGYC 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 5 cut(s) 3, 154, 220, 258, 298
LguI GCTCTTC 1 cut(s) 99
LpnPI CCDG 5 cut(s) 26, 60, 107, 175, 301
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 283
MalI GATC 5 cut(s) 5, 156, 222, 260, 300
MboI GATC 5 cut(s) 3, 154, 220, 258, 298
MboII GAAGA 1 cut(s) 116
MflI RGATCY 2 cut(s) 154, 298
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 2 cut(s) 24, 167
MlyI GAGTC 2 cut(s) 51, 298
MmeI TCCRAC 2 cut(s) 182, 326
MnlI CCTC 6 cut(s) 58, 145, 228, 316, 348, 352
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 4 cut(s) 13, 47, 162, 288
MspR9I CCNGG 4 cut(s) 14, 47, 163, 289
MvnI CGCG 1 cut(s) 257
NciI CCSGG 4 cut(s) 14, 47, 163, 289
NdeII GATC 5 cut(s) 3, 154, 220, 258, 298
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 283
NspV TTCGAA 2 cut(s) 29, 209
OliI CACNNNNGTG 1 cut(s) 353
PciSI GCTCTTC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 267
PdmI GAANNNNTTC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 83, 256
Ple19I CGATCG 1 cut(s) 261
PleI GAGTC 2 cut(s) 50, 298
PpsI GAGTC 2 cut(s) 50, 298
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 2 cut(s) 154, 298
PvuI CGATCG 1 cut(s) 261
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 82, 255
Sau3AI GATC 5 cut(s) 3, 154, 220, 258, 298
SchI GAGTC 2 cut(s) 51, 298
ScrFI CCNGG 4 cut(s) 14, 47, 163, 289
SduI GDGCHC 1 cut(s) 350
SetI ASST 4 cut(s) 134, 146, 239, 327
SfuI TTCGAA 2 cut(s) 29, 209
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 2 cut(s) 24, 167
SsiI CCGC 3 cut(s) 81, 113, 255
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 4 cut(s) 12, 45, 161, 287
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 352
TaqI TCGA 4 cut(s) 29, 209, 261, 270
TasI AATT 2 cut(s) 24, 167
TauI GCSGC 2 cut(s) 84, 257
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.