RLG00000005920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004258
Physical Location & Seq
Reverse (-)
2812733 .. 2813161
429 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005920

Sequence Viewer

Length: 348 bp
ATGGATGATCCATCGGTGCTCGTTATTGGTTGGCCGGAAGATTTCGCTGGATCTCCACAGGGGTCGACCAAGGACGGCGGAGATTGGGGCGGTTGGGACAGCGACGCATGGGGACACGGTAGTGGCAGCTTCTCAGCGGCGGTGCATGGTGGAGGTCTTGTAGCGGCGGCGCGGGTTCACGGTGCTGGTGGTCGGAATCTGTTTGGAGGTGGGGGTTGGGGTGCCCATAGCAGTTTTAATGCATTGGGCTCCTTGGGCCTTACTCTGGGTTATGAGTTGTTGGACTGGAATTTGGGTTCCAGAGTTGTGGGCCCTGAGATGAATTTTTGCTCATGGTTGGGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

11.67

Weight (kDa)

4.59

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 65
AccII CGCG 1 cut(s) 172
AciI CCGC 7 cut(s) 78, 90, 137, 140, 164, 167, 172
AclWI GGATC 2 cut(s) 2, 58
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 2 cut(s) 289, 322
AfiI CCNNNNNNNGG 1 cut(s) 265
AleI CACNNNNGTG 1 cut(s) 120
AloI GAACNNNNNNTCC 2 cut(s) 280, 312
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 2 cut(s) 2, 58
AoxI GGCC 3 cut(s) 32, 256, 310
ApaI GGGCCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 2 cut(s) 289, 322
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 256, 310, 311
BaeGI GKGCMC 2 cut(s) 226, 314
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 251, 314
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 138
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 91
BisI GCNGC 4 cut(s) 127, 138, 165, 168
BlsI GCNGC 4 cut(s) 128, 139, 166, 169
BmgT120I GGNCC 3 cut(s) 256, 310, 311
BmiI GGNNCC 4 cut(s) 223, 250, 298, 312
BsaJI CCNNGG 2 cut(s) 69, 252
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 69, 252
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 147, 306
BseNI ACTGG 1 cut(s) 290
BseSI GKGCMC 2 cut(s) 226, 314
BseXI GCAGC 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 3 cut(s) 34, 258, 312
BshNI GGYRCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 2 cut(s) 110, 126
BslI CCNNNNNNNGG 1 cut(s) 265
BsmFI GGGAC 2 cut(s) 110, 126
BsnI GGCC 3 cut(s) 34, 258, 312
Bsp120I GGGCCC 1 cut(s) 310
Bsp1286I GDGCHC 4 cut(s) 21, 226, 251, 314
Bsp143I GATC 2 cut(s) 7, 50
BspACI CCGC 7 cut(s) 78, 90, 137, 140, 164, 167, 172
BspANI GGCC 3 cut(s) 34, 258, 312
BspCNI CTCAG 2 cut(s) 146, 307
BspFNI CGCG 1 cut(s) 172
BspLI GGNNCC 4 cut(s) 223, 250, 298, 312
BspPI GGATC 2 cut(s) 2, 58
BspT107I GGYRCC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 69, 252
BssMI GATC 2 cut(s) 7, 50
BssT1I CCWWGG 2 cut(s) 69, 252
Bst4CI ACNGT 2 cut(s) 119, 182
BstDEI CTNAG 2 cut(s) 133, 315
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 10, 53
BstMBI GATC 2 cut(s) 7, 50
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstSLI GKGCMC 2 cut(s) 226, 314
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 3 cut(s) 34, 258, 312
BtsCI GGATG 1 cut(s) 10
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 256, 310, 311
CseI GACGC 1 cut(s) 113
CviAII CATG 3 cut(s) 108, 146, 333
CviJI RGCY 6 cut(s) 34, 129, 249, 258, 312, 342
CviKI_1 RGCY 6 cut(s) 34, 129, 249, 258, 312, 342
DdeI CTNAG 2 cut(s) 133, 315
DpnI GATC 2 cut(s) 9, 52
DpnII GATC 2 cut(s) 7, 50
EaeI YGGCCR 1 cut(s) 32
EciI GGCGGA 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 69, 252
Eco24I GRGCYC 2 cut(s) 251, 314
EcoO109I RGGNCCY 1 cut(s) 311
EcoT14I CCWWGG 2 cut(s) 69, 252
EcoT22I ATGCAT 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 251, 314
ErhI CCWWGG 2 cut(s) 69, 252
FaeI CATG 3 cut(s) 111, 149, 336
FaiI YATR 5 cut(s) 109, 147, 228, 273, 334
FaqI GGGAC 2 cut(s) 110, 126
FatI CATG 3 cut(s) 107, 145, 332
FauI CCCGC 1 cut(s) 165
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 4 cut(s) 127, 138, 165, 168
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 251, 314
Fsp4HI GCNGC 4 cut(s) 127, 138, 165, 168
GlaI GCGC 1 cut(s) 171
GluI GCNGC 4 cut(s) 127, 138, 165, 168
HaeIII GGCC 3 cut(s) 34, 258, 312
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 172
Hin1II CATG 3 cut(s) 111, 149, 336
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 66, 178
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 300
Hpy8I GTNNAC 2 cut(s) 66, 178
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 2 cut(s) 119, 182
HpyCH4V TGCA 2 cut(s) 145, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 133, 315
Hsp92II CATG 3 cut(s) 111, 149, 336
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 2 cut(s) 7, 50
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 8 cut(s) 33, 44, 48, 171, 251, 271, 313, 327
Lsp1109I GCAGC 1 cut(s) 138
MalI GATC 2 cut(s) 9, 52
MboI GATC 2 cut(s) 7, 50
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 4 cut(s) 21, 226, 251, 314
MluCI AATT 2 cut(s) 289, 322
MmeI TCCRAC 2 cut(s) 173, 261
MnlI CCTC 2 cut(s) 146, 200
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 255
NdeII GATC 2 cut(s) 7, 50
NlaIII CATG 3 cut(s) 111, 149, 336
NlaIV GGNNCC 4 cut(s) 223, 250, 298, 312
NsiI ATGCAT 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 120
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 4 cut(s) 128, 139, 166, 169
PspN4I GGNNCC 4 cut(s) 223, 250, 298, 312
PspOMI GGGCCC 1 cut(s) 310
PspPI GGNCC 3 cut(s) 256, 310, 311
PsuI RGATCY 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 120
SalI GTCGAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 4 cut(s) 127, 138, 165, 168
Sau3AI GATC 2 cut(s) 7, 50
Sau96I GGNCC 3 cut(s) 256, 310, 311
SduI GDGCHC 4 cut(s) 21, 226, 251, 314
SetI ASST 3 cut(s) 131, 157, 211
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 2 cut(s) 289, 322
SsiI CCGC 7 cut(s) 78, 90, 137, 140, 164, 167, 172
StyI CCWWGG 2 cut(s) 69, 252
TaaI ACNGT 2 cut(s) 119, 182
TaqI TCGA 1 cut(s) 65
TasI AATT 2 cut(s) 289, 322
TauI GCSGC 3 cut(s) 140, 167, 170
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 335
XapI RAATTY 2 cut(s) 289, 322
XmiI GTMKAC 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.