Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Reverse (-)

63028110 .. 63028625

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG376900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCATCGTCATCACTAGTCCTGTGGCTAATTGTGTCGTCTTGCTTGCTGTGTTTGGTTGGGGTTATGGAGAGCCGCCTTGGTCTGGGGCTTTTCTTTACTCCTCTGTCGTCGATTTAGTCTCGGCGTTTCGACTGGGGGAGAGTGATATGGTGGACGGCTTGTTTCTCGGACTCTCCGAAGAGCGTCCGCTATGGCTGGATTTGACCTTGGGGCGTAGCTCAATGGAGGATCCAACTGGGAATTGGCTAGTTGGGGATTTGCTGGGAGAGTTTGTTGGCTTTCAAAGGGGGTCGATCAAGGTCAGCGGAGGACTGGGGTTAACTCTGCTGCGATCTGATTGGGTTGATTATGGGGTGGCGACTGGGTATGGAGATCTGACCCGGTTTGCTTCTGTTGGCGGCTGGGACGGCGTCTCACTGGGACATGGTGGTAGAGGCTTCTCGGCGGCGGTGCGAGTGTTCGGTGGCGGAGACCGTGCAGCGACGGCGCCGGCTCATGGTTCTGGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

17.75

Weight (kDa)

4.59

Isoelectric Point (pI)

25.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	490
AciI	CCGC	7 cut(s)	77, 191, 309, 402, 449, 452, 471
AclWI	GGATC	2 cut(s)	227, 240
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	414, 491
AfiI	CCNNNNNNNGG	2 cut(s)	86, 500
AgsI	TTSAA	1 cut(s)	287
AhlI	ACTAGT	1 cut(s)	17
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	127, 421, 468
AlwI	GGATC	2 cut(s)	227, 240
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	331, 482
AspLEI	GCGC	1 cut(s)	493
AsuC2I	CCSGG	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	490
BbvI	GCAGC	2 cut(s)	318, 494
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	3 cut(s)	175, 427, 504
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	3 cut(s)	127, 421, 468
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	2 cut(s)	18, 251
BfoI	RGCGCY	1 cut(s)	494
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	5 cut(s)	77, 332, 403, 450, 483
BlsI	GCNGC	5 cut(s)	78, 333, 404, 451, 484
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	234, 492
BmrFI	CCNGG	1 cut(s)	385
BmrI	ACTGGG	5 cut(s)	146, 249, 326, 375, 431
BmuI	ACTGGG	5 cut(s)	146, 249, 326, 375, 431
BpuMI	CCSGG	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	414, 491
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	80, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 500
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	5 cut(s)	141, 244, 321, 370, 426
BseDI	CCNNGG	2 cut(s)	80, 210
BseLI	CCNNNNNNNGG	2 cut(s)	86, 500
BseNI	ACTGG	5 cut(s)	141, 244, 321, 370, 426
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	318, 494
BseYI	CCCAGC	2 cut(s)	265, 405
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	385, 494
BslFI	GGGAC	2 cut(s)	422, 438
BslI	CCNNNNNNNGG	2 cut(s)	86, 500
BsmAI	GTCTC	3 cut(s)	127, 421, 468
BsmBI	CGTCTC	1 cut(s)	421
BsmFI	GGGAC	2 cut(s)	422, 438
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	232, 297, 335, 376
BspACI	CCGC	7 cut(s)	77, 191, 309, 402, 449, 452, 471
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	234, 492
BspPI	GGATC	2 cut(s)	227, 240
BspQI	GCTCTTC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	5 cut(s)	141, 244, 321, 370, 426
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	80, 210
BssMI	GATC	4 cut(s)	232, 297, 335, 376
BssNI	GRCGYC	2 cut(s)	414, 491
BssT1I	CCWWGG	2 cut(s)	80, 210
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	2 cut(s)	414, 491
BstC8I	GCNNGC	2 cut(s)	48, 495
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	4 cut(s)	235, 300, 338, 379
BstMAI	GTCTC	3 cut(s)	127, 421, 468
BstMBI	GATC	4 cut(s)	232, 297, 335, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	411, 488
BstSCI	CCNGG	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	318, 494
BstX2I	RGATCY	2 cut(s)	232, 376
BstYI	RGATCY	2 cut(s)	232, 376
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	48, 495
CfoI	GCGC	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	493
CseI	GACGC	2 cut(s)	176, 403
CviAII	CATG	2 cut(s)	428, 500
DinI	GGCGCC	1 cut(s)	492
DpnI	GATC	4 cut(s)	234, 299, 337, 378
DpnII	GATC	4 cut(s)	232, 297, 335, 376
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	80, 210
Eco31I	GGTCTC	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	80, 210
EgeI	GGCGCC	1 cut(s)	492
EheI	GGCGCC	1 cut(s)	492
ErhI	CCWWGG	2 cut(s)	80, 210
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	2 cut(s)	431, 503
FaiI	YATR	7 cut(s)	69, 152, 196, 354, 372, 429, 501
FaqI	GGGAC	2 cut(s)	422, 438
FatI	CATG	2 cut(s)	427, 499
Fnu4HI	GCNGC	5 cut(s)	77, 332, 403, 450, 483
Fsp4HI	GCNGC	5 cut(s)	77, 332, 403, 450, 483
FspBI	CTAG	2 cut(s)	18, 251
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	5 cut(s)	77, 332, 403, 450, 483
GsaI	CCCAGC	2 cut(s)	269, 409
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	385, 494
HgaI	GACGC	2 cut(s)	176, 403
HhaI	GCGC	1 cut(s)	493
Hin1I	GRCGYC	2 cut(s)	414, 491
Hin1II	CATG	2 cut(s)	431, 503
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	1 cut(s)	174
HpaI	GTTAAC	1 cut(s)	324
HpaII	CCGG	2 cut(s)	385, 494
Hpy166II	GTNNAC	2 cut(s)	157, 324
Hpy188I	TCNGA	4 cut(s)	173, 181, 340, 381
Hpy8I	GTNNAC	2 cut(s)	157, 324
Hpy99I	CGWCG	2 cut(s)	116, 490
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	411, 488
Hsp92I	GRCGYC	2 cut(s)	414, 491
Hsp92II	CATG	2 cut(s)	431, 503
HspAI	GCGC	1 cut(s)	491
KasI	GGCGCC	1 cut(s)	490
KroI	GCCGGC	1 cut(s)	493
KroNI	GCCGGC	1 cut(s)	495
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	232, 297, 335, 376
LguI	GCTCTTC	1 cut(s)	177
Lsp1109I	GCAGC	2 cut(s)	318, 494
MaeI	CTAG	2 cut(s)	18, 251
MalI	GATC	4 cut(s)	234, 299, 337, 378
MboI	GATC	4 cut(s)	232, 297, 335, 376
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	2 cut(s)	232, 376
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	31, 244
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	115, 223, 305, 431
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	323
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	2 cut(s)	385, 494
MspR9I	CCNGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	2 cut(s)	411, 488
NaeI	GCCGGC	1 cut(s)	495
NarI	GGCGCC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	4 cut(s)	232, 297, 335, 376
NgoMIV	GCCGGC	1 cut(s)	493
NlaIII	CATG	2 cut(s)	431, 503
NlaIV	GGNNCC	2 cut(s)	234, 492
NmeAIII	GCCGAG	2 cut(s)	104, 425
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	495
PflFI	GACNNNGTC	1 cut(s)	413
PkrI	GCNGC	5 cut(s)	78, 333, 404, 451, 484
PleI	GAGTC	1 cut(s)	168
PluTI	GGCGCC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	168
PspFI	CCCAGC	2 cut(s)	265, 405
PspN4I	GGNNCC	2 cut(s)	234, 492
PsuI	RGATCY	2 cut(s)	232, 376
PsyI	GACNNNGTC	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	5 cut(s)	77, 332, 403, 450, 483
Sau3AI	GATC	4 cut(s)	232, 297, 335, 376
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	385
SetI	ASST	3 cut(s)	212, 224, 306
SfoI	GGCGCC	1 cut(s)	492
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	2 cut(s)	31, 244
SsiI	CCGC	7 cut(s)	77, 191, 309, 402, 449, 452, 471
SspDI	GGCGCC	1 cut(s)	490
SspMI	CTAG	2 cut(s)	18, 251
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	2 cut(s)	80, 210
TaaI	ACNGT	1 cut(s)	479
TaqI	TCGA	3 cut(s)	114, 133, 296
TasI	AATT	2 cut(s)	31, 244
TauI	GCSGC	3 cut(s)	79, 405, 452
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	2 cut(s)	331, 482
TspRI	CASTG	1 cut(s)	426
Tth111I	GACNNNGTC	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
XspI	CTAG	2 cut(s)	18, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.