Rh6DG076700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004258
Physical Location & Seq
Reverse (-)
8720281 .. 8720700
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG076700.1

Sequence Viewer

Length: 420 bp
ATGGTGGAGGATTTGGTTTTCGGACTCTCTGATGAGCGTCCATTATGGCTGGGCTCGACTTCAGGGCGTAGATTGATGGAAGATCCATCAGTGTGTCAGCTAGTAAAGGCTTCGCCGGAAGTTTTCGCTAGCTCTCGATGGAGGCTAATCAAGTATCGCGGAGGTCGAGGGTTGCCTCTGCTGGAATATTTTCTGGCCGCTGCCATCGGTGAGACTGATCGGGGAGATCTGATCCGATTTGCTTCTGATGGTGACTGGGACGGCATCCCACGGGGACACCGTGGAGGCTTCTCAGCGGCTGTACAGGTTCTTAATGGCGGAGGCACTGCAGTAGCGATGCAGGCTAACAATGCTGATGGCCGAAAATTATTTGGAGGTGGTGTAAGGGTGCCTATAGCAGTTTCCTTGCATCAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.88

Weight (kDa)

7.95

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccII CGCG 1 cut(s) 159
AciI CCGC 4 cut(s) 159, 198, 296, 318
AclWI GGATC 2 cut(s) 77, 226
AcoI YGGCCR 2 cut(s) 195, 358
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 303
AluBI AGCT 2 cut(s) 100, 132
AluI AGCT 2 cut(s) 100, 132
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 77, 226
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 2 cut(s) 195, 358
ApeKI GCWGC 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 221, 263
AsuNHI GCTAGC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 187
BccI CCATC 6 cut(s) 70, 94, 132, 212, 242, 350
BceAI ACGGC 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 2 cut(s) 101, 129
BfmI CTRYAG 2 cut(s) 327, 393
BglII AGATCT 1 cut(s) 226
BisI GCNGC 3 cut(s) 198, 201, 297
BlsI GCNGC 3 cut(s) 199, 202, 298
BmiI GGNNCC 1 cut(s) 390
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 2 cut(s) 273, 327
BmtI GCTAGC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 269, 280
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bse1I ACTGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 269, 280
BseGI GGATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 197, 360
BshNI GGYRCC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 2 cut(s) 272, 288
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 272, 288
BsnI GGCC 2 cut(s) 197, 360
Bsp1286I GDGCHC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 4 cut(s) 82, 217, 226, 231
BspACI CCGC 4 cut(s) 159, 198, 296, 318
BspANI GGCC 2 cut(s) 197, 360
BspCNI CTCAG 1 cut(s) 305
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 331
BspOI GCTAGC 1 cut(s) 132
BspPI GGATC 2 cut(s) 77, 226
BspT107I GGYRCC 1 cut(s) 388
BsrGI TGTACA 1 cut(s) 301
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 269, 280
BssMI GATC 4 cut(s) 82, 217, 226, 231
Bst4CI ACNGT 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 130, 342
BstDEI CTNAG 2 cut(s) 292, 417
BstDSI CCRYGG 2 cut(s) 269, 280
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 4 cut(s) 85, 220, 229, 234
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 4 cut(s) 82, 217, 226, 231
BstMWI GCNNNNNNNGC 2 cut(s) 341, 350
BstSFI CTRYAG 2 cut(s) 327, 393
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 82, 226
BstYI RGATCY 2 cut(s) 82, 226
BsuRI GGCC 2 cut(s) 197, 360
BtgI CCRYGG 2 cut(s) 269, 280
BtgZI GCGATG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 96, 324
Cac8I GCNNGC 2 cut(s) 130, 342
CaiI CAGNNNCTG 1 cut(s) 299
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 302
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 2 cut(s) 292, 417
DpnI GATC 4 cut(s) 84, 219, 228, 233
DpnII GATC 4 cut(s) 82, 217, 226, 231
EaeI YGGCCR 2 cut(s) 195, 358
EciI GGCGGA 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 56
FaiI YATR 2 cut(s) 46, 395
FaqI GGGAC 2 cut(s) 272, 288
Fnu4HI GCNGC 3 cut(s) 198, 201, 297
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 3 cut(s) 198, 201, 297
FspBI CTAG 2 cut(s) 101, 129
GluI GCNGC 3 cut(s) 198, 201, 297
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 197, 360
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 24
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 221, 263
Hpy188I TCNGA 5 cut(s) 23, 31, 231, 236, 247
Hpy188III TCNNGA 1 cut(s) 135
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 329, 340, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 350
HpyF3I CTNAG 2 cut(s) 292, 417
Kzo9I GATC 4 cut(s) 82, 217, 226, 231
LpnPI CCDG 9 cut(s) 35, 48, 129, 167, 179, 241, 290, 326, 398
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 2 cut(s) 273, 327
MaeI CTAG 2 cut(s) 101, 129
MaeIII GTNAC 1 cut(s) 251
MalI GATC 4 cut(s) 84, 219, 228, 233
MboI GATC 4 cut(s) 82, 217, 226, 231
MboII GAAGA 1 cut(s) 92
MflI RGATCY 2 cut(s) 82, 226
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 365
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 7 cut(s) 135, 155, 161, 186, 278, 314, 368
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 91
MspA1I CMGCKG 2 cut(s) 200, 296
MspI CCGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 341, 350
NdeII GATC 4 cut(s) 82, 217, 226, 231
NheI GCTAGC 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 163, 277
PdmI GAANNNNTTC 1 cut(s) 189
PkrI GCNGC 3 cut(s) 199, 202, 298
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 390
PstI CTGCAG 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 2 cut(s) 82, 226
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 3 cut(s) 198, 201, 297
Sau3AI GATC 4 cut(s) 82, 217, 226, 231
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 1 cut(s) 56
SetI ASST 5 cut(s) 102, 134, 166, 309, 379
SfaNI GCATC 2 cut(s) 273, 327
SfcI CTRYAG 2 cut(s) 327, 393
SmiMI CAYNNNNRTG 1 cut(s) 91
Sse9I AATT 1 cut(s) 365
SsiI CCGC 4 cut(s) 159, 198, 296, 318
SspI AATATT 1 cut(s) 188
SspMI CTAG 2 cut(s) 101, 129
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 3 cut(s) 56, 136, 166
TasI AATT 1 cut(s) 365
TatI WGTACW 1 cut(s) 301
TauI GCSGC 2 cut(s) 200, 299
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 96, 331
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 251
TspRI CASTG 2 cut(s) 96, 331
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 101, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.