Rh5BG175700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004258
Physical Location & Seq
Forward (+)
18731993 .. 18732328
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG175700.1

Sequence Viewer

Length: 255 bp
ATGGAAGATCCATCGGTGCTCGTTCTTGTTTGGCCGGAAGATTTCGCTAGATCTCAATTGGGGCCGATCAAGGACGACGGAGAATGCAGCGGTTGGGACGACGTCGCACGGGGACACGGTAGTGGAGGCTTCTCGGTGGCAGTGCAAGCAATCGGTGGGAGAGGACTTATAGCGGCAACACGGGTTCATGGTGCTGGTGGCCGGAATCTTTTTGGAGGTGGTGTTGGGGTGCCCACAGCAGCTTCCATGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.49

Weight (kDa)

5.37

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 2 cut(s) 90, 173
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 2 cut(s) 32, 199
AcyI GRCGYC 1 cut(s) 102
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 1 cut(s) 2
AoxI GGCC 3 cut(s) 32, 62, 199
ApeKI GCWGC 2 cut(s) 87, 239
AspS9I GGNCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 234
BanI GGYRCC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 99, 251
BccI CCATC 1 cut(s) 19
BfaI CTAG 1 cut(s) 48
BglII AGATCT 1 cut(s) 50
BisI GCNGC 3 cut(s) 88, 174, 240
BlsI GCNGC 3 cut(s) 89, 175, 241
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 2 cut(s) 63, 231
BsaHI GRCGYC 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 2 cut(s) 99, 251
BshFI GGCC 3 cut(s) 34, 64, 201
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 2 cut(s) 35, 202
BslFI GGGAC 2 cut(s) 110, 126
BsmFI GGGAC 2 cut(s) 110, 126
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 3 cut(s) 34, 64, 201
Bsp1286I GDGCHC 2 cut(s) 21, 234
Bsp143I GATC 3 cut(s) 7, 50, 66
BspACI CCGC 2 cut(s) 90, 173
BspANI GGCC 3 cut(s) 34, 64, 201
BspLI GGNNCC 2 cut(s) 63, 231
BspPI GGATC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 229
BssMI GATC 3 cut(s) 7, 50, 66
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 147
BstKTI GATC 3 cut(s) 10, 53, 69
BstMBI GATC 3 cut(s) 7, 50, 66
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 99, 251
BstX2I RGATCY 2 cut(s) 7, 50
BstYI RGATCY 2 cut(s) 7, 50
BsuRI GGCC 3 cut(s) 34, 64, 201
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 2 cut(s) 188, 247
CviJI RGCY 5 cut(s) 34, 64, 129, 201, 242
CviKI_1 RGCY 5 cut(s) 34, 64, 129, 201, 242
DpnI GATC 3 cut(s) 9, 52, 68
DpnII GATC 3 cut(s) 7, 50, 66
EaeI YGGCCR 2 cut(s) 32, 199
EcoT22I ATGCAT 1 cut(s) 252
FaeI CATG 2 cut(s) 191, 250
FaiI YATR 3 cut(s) 170, 189, 248
FaqI GGGAC 2 cut(s) 110, 126
FatI CATG 2 cut(s) 187, 246
Fnu4HI GCNGC 3 cut(s) 88, 174, 240
Fsp4HI GCNGC 3 cut(s) 88, 174, 240
FspBI CTAG 1 cut(s) 48
GluI GCNGC 3 cut(s) 88, 174, 240
HaeIII GGCC 3 cut(s) 34, 64, 201
HapII CCGG 2 cut(s) 35, 202
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 191, 250
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 35, 202
Hpy99I CGWCG 3 cut(s) 80, 104, 107
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 87, 145, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 191, 250
Kzo9I GATC 3 cut(s) 7, 50, 66
LpnPI CCDG 3 cut(s) 48, 180, 215
Lsp1109I GCAGC 2 cut(s) 99, 251
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 102
MalI GATC 3 cut(s) 9, 52, 68
MboI GATC 3 cut(s) 7, 50, 66
MboII GAAGA 2 cut(s) 17, 50
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 2 cut(s) 7, 50
MhlI GDGCHC 2 cut(s) 21, 234
MluCI AATT 1 cut(s) 56
MnlI CCTC 3 cut(s) 119, 155, 209
Mph1103I ATGCAT 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 2 cut(s) 35, 202
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 3 cut(s) 7, 50, 66
NlaIII CATG 2 cut(s) 191, 250
NlaIV GGNNCC 2 cut(s) 63, 231
NsiI ATGCAT 1 cut(s) 252
OliI CACNNNNGTG 1 cut(s) 120
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 3 cut(s) 89, 175, 241
PspN4I GGNNCC 2 cut(s) 63, 231
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 2 cut(s) 7, 50
PsyI GACNNNGTC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 120
SatI GCNGC 3 cut(s) 88, 174, 240
Sau3AI GATC 3 cut(s) 7, 50, 66
Sau96I GGNCC 1 cut(s) 62
SduI GDGCHC 2 cut(s) 21, 234
SetI ASST 3 cut(s) 105, 220, 244
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 1 cut(s) 56
SsiI CCGC 2 cut(s) 90, 173
SspMI CTAG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 105
TasI AATT 1 cut(s) 56
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 205
TscAI CASTG 1 cut(s) 147
TseI GCWGC 2 cut(s) 87, 239
TspDTI ATGAA 1 cut(s) 176
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 101
XspI CTAG 1 cut(s) 48
ZraI GACGTC 1 cut(s) 103
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.