Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Forward (+)

64955758 .. 64956447

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG429500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCCATGGTCATCATCAGCCTTGCAGCTCTCTATTTCTTGCTGCTTGCTGTGTTTGATTGTTCATATGGGAAGCCGCCTTGGCCTGAGGCTTCTCTTTCTCCTTTTGTCGTCAACCAAGTGTTCCGGTTGGAGGATGCAGTGGTGGACGTCTTGGTGGCTGGATTATCCGGTGACCGTCCGCTCTGGTTGGGAGCTAGGGCCCGAAAACTGGATCTGAGTTCGGGTCGAAGCTTCAAGGGGGATCCGATGGTAGATTGTTCTGTTGGGTTTCGAAGGGAGTCGATCAAAGACGGCGGAGGTCTGGGGTTGATTCTACTGCGATCTGGTTGGGCCGATAACGGGGGCGCGACTAGTTGGGGAAATCTGACCCAATTTGCTTCTGCTGGTGGTTGGGACGGAGTCTCACGGGGACAGGATGGTGGCGGCTTCTCGGCGGGGGTGCGAGAGTTTGGTGGCGACGGCCTTGCAGCGACGGAGCTGGCTCATGGTTTCGGTGGCCGGAATCTGTTGGGTGGAGGTGTTGGGGTGCCCATCGTAGTCTCCATGCTTTGGGCCTCCTTCTGGGTAATGGGCAGTTGGGCAGTTATTTGGATTCCAAAGATGTTGGACCTGAGGTGGAAGTTTGTTCATGGGTGGGGCTGTTTGTTGGGCTCCCTGTGGATCGGATACTGGGCTGAGGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.41

Weight (kDa)

5.68

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccBSI	CCGCTC	1 cut(s)	184
AccII	CGCG	1 cut(s)	350
AciI	CCGC	5 cut(s)	77, 182, 297, 426, 437
AclWI	GGATC	4 cut(s)	222, 239, 252, 671
AcoI	YGGCCR	2 cut(s)	3, 499
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	5 cut(s)	133, 211, 342, 552, 564
AgsI	TTSAA	1 cut(s)	238
AhlI	ACTAGT	1 cut(s)	353
AluBI	AGCT	4 cut(s)	29, 197, 234, 481
AluI	AGCT	4 cut(s)	29, 197, 234, 481
Alw26I	GTCTC	2 cut(s)	409, 547
AlwI	GGATC	4 cut(s)	222, 239, 252, 671
AoxI	GGCC	7 cut(s)	3, 83, 201, 333, 463, 499, 555
ApaI	GGGCCC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	26, 43, 470
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	5 cut(s)	201, 202, 333, 555, 610
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	610
AxyI	CCTNAGG	2 cut(s)	87, 614
BaeGI	GKGCMC	2 cut(s)	205, 534
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	2 cut(s)	205, 656
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	30, 38, 482
BccI	CCATC	3 cut(s)	244, 413, 542
BceAI	ACGGC	2 cut(s)	310, 478
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciVI	GTATCC	1 cut(s)	662
BcoDI	GTCTC	2 cut(s)	409, 547
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	2 cut(s)	198, 354
BfuI	GTATCC	1 cut(s)	662
BglI	GCCNNNNNGGC	1 cut(s)	82
BisI	GCNGC	5 cut(s)	27, 44, 77, 427, 471
BlsI	GCNGC	5 cut(s)	28, 45, 78, 428, 472
Bme18I	GGWCC	1 cut(s)	610
BmgT120I	GGNCC	5 cut(s)	201, 202, 333, 555, 610
BmiI	GGNNCC	4 cut(s)	203, 246, 531, 655
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	682
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	6, 80
BsaWI	WCCGGW	2 cut(s)	126, 170
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 211, 342, 552, 564
Bse1I	ACTGG	2 cut(s)	216, 677
Bse21I	CCTNAGG	2 cut(s)	87, 614
BseDI	CCNNGG	2 cut(s)	6, 80
BseGI	GGATG	2 cut(s)	142, 424
BseLI	CCNNNNNNNGG	5 cut(s)	133, 211, 342, 552, 564
BseMII	CTCAG	4 cut(s)	78, 209, 605, 669
BseNI	ACTGG	2 cut(s)	216, 677
BseSI	GKGCMC	2 cut(s)	205, 534
BseXI	GCAGC	3 cut(s)	30, 38, 482
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	7 cut(s)	5, 85, 203, 335, 465, 501, 557
BshNI	GGYRCC	1 cut(s)	529
BsiSI	CCGG	3 cut(s)	127, 171, 502
BslFI	GGGAC	2 cut(s)	410, 426
BslI	CCNNNNNNNGG	5 cut(s)	133, 211, 342, 552, 564
BsmAI	GTCTC	2 cut(s)	409, 547
BsmFI	GGGAC	2 cut(s)	410, 426
BsnI	GGCC	7 cut(s)	5, 85, 203, 335, 465, 501, 557
Bsp119I	TTCGAA	1 cut(s)	274
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	205, 534, 656
Bsp143I	GATC	5 cut(s)	214, 244, 285, 323, 663
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	5 cut(s)	77, 182, 297, 426, 437
BspANI	GGCC	7 cut(s)	5, 85, 203, 335, 465, 501, 557
BspCNI	CTCAG	4 cut(s)	79, 210, 606, 670
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	4 cut(s)	203, 246, 531, 655
BspPI	GGATC	4 cut(s)	222, 239, 252, 671
BspT104I	TTCGAA	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	529
BsrBI	CCGCTC	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	216, 677
BssECI	CCNNGG	2 cut(s)	6, 80
BssMI	GATC	5 cut(s)	214, 244, 285, 323, 663
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	2 cut(s)	6, 80
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	48, 483
BstDEI	CTNAG	4 cut(s)	87, 218, 614, 678
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	142, 424
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	5 cut(s)	217, 247, 288, 326, 666
BstMAI	GTCTC	2 cut(s)	409, 547
BstMBI	GATC	5 cut(s)	214, 244, 285, 323, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstPI	GGTNACC	1 cut(s)	173
BstSLI	GKGCMC	2 cut(s)	205, 534
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	30, 38, 482
BstX2I	RGATCY	2 cut(s)	214, 244
BstYI	RGATCY	2 cut(s)	214, 244
Bsu36I	CCTNAGG	2 cut(s)	87, 614
BsuI	GTATCC	1 cut(s)	662
BsuRI	GGCC	7 cut(s)	5, 85, 203, 335, 465, 501, 557
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	142, 424
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	48, 483
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	5 cut(s)	201, 202, 333, 555, 610
CviAII	CATG	4 cut(s)	7, 488, 547, 632
DdeI	CTNAG	4 cut(s)	87, 218, 614, 678
DpnI	GATC	5 cut(s)	216, 246, 287, 325, 665
DpnII	GATC	5 cut(s)	214, 244, 285, 323, 663
EaeI	YGGCCR	2 cut(s)	3, 499
EciI	GGCGGA	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	6, 80
Eco24I	GRGCYC	2 cut(s)	205, 656
Eco47I	GGWCC	1 cut(s)	610
Eco81I	CCTNAGG	2 cut(s)	87, 614
Eco91I	GGTNACC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	201
EcoO65I	GGTNACC	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	6, 80
EcoT38I	GRGCYC	2 cut(s)	205, 656
ErhI	CCWWGG	2 cut(s)	6, 80
FaeI	CATG	4 cut(s)	10, 491, 550, 635
FaiI	YATR	6 cut(s)	8, 67, 69, 489, 548, 633
FaqI	GGGAC	2 cut(s)	410, 426
FatI	CATG	4 cut(s)	6, 487, 546, 631
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	5 cut(s)	27, 44, 77, 427, 471
FokI	GGATG	2 cut(s)	149, 431
FriOI	GRGCYC	2 cut(s)	205, 656
Fsp4HI	GCNGC	5 cut(s)	27, 44, 77, 427, 471
FspBI	CTAG	2 cut(s)	198, 354
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	5 cut(s)	27, 44, 77, 427, 471
HaeIII	GGCC	7 cut(s)	5, 85, 203, 335, 465, 501, 557
HapII	CCGG	3 cut(s)	127, 171, 502
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	10, 491, 550, 635
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	5 cut(s)	281, 313, 402, 505, 595
HpaII	CCGG	3 cut(s)	127, 171, 502
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	115, 148
Hpy188I	TCNGA	4 cut(s)	219, 249, 369, 668
Hpy8I	GTNNAC	2 cut(s)	115, 148
Hpy99I	CGWCG	2 cut(s)	464, 478
HpyAV	CCTTC	2 cut(s)	270, 571
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	26, 140, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	4 cut(s)	87, 218, 614, 678
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	10, 491, 550, 635
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	5 cut(s)	214, 244, 285, 323, 663
LmnI	GCTCC	3 cut(s)	194, 478, 659
Lsp1109I	GCAGC	3 cut(s)	30, 38, 482
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	198, 354
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	5 cut(s)	216, 246, 287, 325, 665
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	5 cut(s)	214, 244, 285, 323, 663
MflI	RGATCY	2 cut(s)	214, 244
MhlI	GDGCHC	3 cut(s)	205, 534, 656
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	374
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	290, 411
MmeI	TCCRAC	2 cut(s)	111, 588
MnlI	CCTC	7 cut(s)	82, 127, 293, 512, 568, 609, 673
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	127, 171, 502
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	5 cut(s)	214, 244, 285, 323, 663
NlaIII	CATG	4 cut(s)	10, 491, 550, 635
NlaIV	GGNNCC	4 cut(s)	203, 246, 531, 655
NmeAIII	GCCGAG	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	313, 505, 595
PflFI	GACNNNGTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	552
PkrI	GCNGC	5 cut(s)	28, 45, 78, 428, 472
PleI	GAGTC	2 cut(s)	289, 410
PpsI	GAGTC	2 cut(s)	289, 410
PspEI	GGTNACC	1 cut(s)	173
PspN4I	GGNNCC	4 cut(s)	203, 246, 531, 655
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	5 cut(s)	201, 202, 333, 555, 610
PsuI	RGATCY	2 cut(s)	214, 244
PsyI	GACNNNGTC	1 cut(s)	401
SatI	GCNGC	5 cut(s)	27, 44, 77, 427, 471
Sau3AI	GATC	5 cut(s)	214, 244, 285, 323, 663
Sau96I	GGNCC	5 cut(s)	201, 202, 333, 555, 610
SchI	GAGTC	2 cut(s)	290, 411
SduI	GDGCHC	3 cut(s)	205, 534, 656
SfaNI	GCATC	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	274
SinI	GGWCC	1 cut(s)	610
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	1 cut(s)	374
SsiI	CCGC	5 cut(s)	77, 182, 297, 426, 437
SspMI	CTAG	2 cut(s)	198, 354
StyI	CCWWGG	2 cut(s)	6, 80
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	229, 274, 284
TasI	AATT	1 cut(s)	374
TauI	GCSGC	2 cut(s)	79, 429
TfiI	GAWTC	3 cut(s)	313, 505, 595
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	26, 43, 470
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	54, 620
TspGWI	ACGGA	2 cut(s)	414, 491
TspRI	CASTG	1 cut(s)	147
Tth111I	GACNNNGTC	1 cut(s)	401
Van91I	CCANNNNNTGG	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	610
XspI	CTAG	2 cut(s)	198, 354
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.