RLG00000019983

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004258
Physical Location & Seq
Reverse (-)
59628853 .. 59629312
460 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019983

Sequence Viewer

Length: 348 bp
ATGGCTGGGTTCGACTTTGGGGCGAAACTTAATGGTAGATCCATTGGTGCTTGTTGGGGTTTGGCTGGAAGATTTTGTTGCGGGTGGGACGGCGTCGCTCGGGAACAGGGCAGTGGAGGATTCTCGGCTCTGGTGCGTGCTCTAAGTGGCAGAGGCTTGGCAGCGGCGGCGAGGGTTCGCTGTGCTGGTGGCTGGAAACTGTTTGGAAATGGTGTTGGGGTGCCCATAGCAACTTCCATGCATTGGGCTCTTTGGGTCTTAATTTGGTTAAGAGTTGTTGGACCAGATTTTGAGAGTTGTTGGACTTGGGATGGACTTTTGCTCCTTGTTGGGGTTGTTGGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.05

Weight (kDa)

9.1

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 3 cut(s) 81, 164, 167
AclWI GGATC 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 243, 331
Alw21I GWGCWC 1 cut(s) 142
AlwI GGATC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 281, 341
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 106
BisI GCNGC 3 cut(s) 162, 165, 168
BlsI GCNGC 3 cut(s) 163, 166, 169
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 281, 341
BmiI GGNNCC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 331
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 243, 331
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 173
BseYI CCCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 343
BshNI GGYRCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 243, 331
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 343
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 3 cut(s) 142, 225, 250
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 3 cut(s) 81, 164, 167
BspANI GGCC 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 220
BssMI GATC 1 cut(s) 38
BssNI GRCGYC 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 281, 341
CseI GACGC 1 cut(s) 82
CviAII CATG 1 cut(s) 238
CviJI RGCY 7 cut(s) 5, 65, 128, 156, 192, 248, 343
CviKI_1 RGCY 7 cut(s) 5, 65, 128, 156, 192, 248, 343
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 227, 239, 346
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 237
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 3 cut(s) 162, 165, 168
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 3 cut(s) 162, 165, 168
GluI GCNGC 3 cut(s) 162, 165, 168
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 343
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 241
HinfI GANTC 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 6 cut(s) 51, 92, 116, 171, 178, 297
Lsp1109I GCAGC 1 cut(s) 173
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 81
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 3 cut(s) 142, 225, 250
MluCI AATT 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 259, 281
MnlI CCTC 3 cut(s) 110, 146, 165
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 3 cut(s) 30, 260, 269
MspA1I CMGCKG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 1 cut(s) 38
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 222
NmeAIII GCCGAG 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 243
PfeI GAWTC 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 3 cut(s) 163, 166, 169
PspFI CCCAGC 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 2 cut(s) 281, 341
PsuI RGATCY 1 cut(s) 38
PsyI GACNNNGTC 1 cut(s) 92
SaqAI TTAA 3 cut(s) 30, 260, 269
SatI GCNGC 3 cut(s) 162, 165, 168
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 2 cut(s) 281, 341
SduI GDGCHC 3 cut(s) 142, 225, 250
SinI GGWCC 1 cut(s) 281
Sse9I AATT 1 cut(s) 261
SsiI CCGC 3 cut(s) 81, 164, 167
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 261
TauI GCSGC 2 cut(s) 167, 170
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 3 cut(s) 30, 260, 269
Tru9I TTAA 3 cut(s) 30, 260, 269
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 161
TspRI CASTG 1 cut(s) 118
Tth111I GACNNNGTC 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.