Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Reverse (-)

8800632 .. 8801207

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG081300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCCACGGTCATCACCAACCTTGTGGCTAACTATCTCTTCCTGATTGCTATGTTTGATTTATCATATGGAGAGCCGCCTTGGCTTGGGGCTTTTCCTACTTCCTCTGTCGATGATTTGGATTGTTCCCCGGTGCTTCAACTGGAAGCTGGTGTTATGGTGGAGGATTTGGTTTTCGGACTCTCTGATGAGCGTCCATTATGGCTGGGCTCGACTTCAGGGCGTAGATTGATGGAAGATCCATCAGTGTGTCAGCTAGTAAAGGCTTCGCCGGAAGTTTTCGCTAGCTCTCGATGGAGGCTAATCAAGTATCGCGGAGGTCGAGGGTTGCCTCTGCTGGAATATTTTCTGGCCGCTGCCATCGGTGAGACTGATCGGGGAGATCTGATCCGATTTGCTTCTGATGGTGACTGGGACGGCATCCCACGGGGACACCGTGGAGGCTTCTCAGCGGCTGTACAGGTTCTTAATGGCGGAGGCACTGCAGTAGCGATGCAGGCTAACAATGCTGATGGCCGAAAATTATTTGGAGGTGGTGTAAGGGTGCCTATAGCAGTTTCCTTGCATCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.47

Weight (kDa)

4.99

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	544
AccII	CGCG	1 cut(s)	315
AciI	CCGC	5 cut(s)	77, 315, 354, 452, 474
AclWI	GGATC	2 cut(s)	233, 382
AcoI	YGGCCR	3 cut(s)	3, 351, 514
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	3 cut(s)	149, 256, 288
AluI	AGCT	3 cut(s)	149, 256, 288
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	233, 382
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	3, 351, 514
ApeKI	GCWGC	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	7, 377, 419
AsuNHI	GCTAGC	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	6 cut(s)	226, 250, 288, 368, 398, 506
BceAI	ACGGC	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	257, 285
BfmI	CTRYAG	2 cut(s)	483, 549
BglI	GCCNNNNNGGC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	4 cut(s)	77, 354, 357, 453
BlsI	GCNGC	4 cut(s)	78, 355, 358, 454
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	2 cut(s)	429, 483
BmtI	GCTAGC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	5 cut(s)	6, 80, 129, 425, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	147, 416
BseDI	CCNNGG	5 cut(s)	6, 80, 129, 425, 436
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	147, 416
BseXI	GCAGC	1 cut(s)	343
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	5, 353, 516
BshNI	GGYRCC	1 cut(s)	544
BsiSI	CCGG	2 cut(s)	131, 272
BslFI	GGGAC	2 cut(s)	428, 444
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	428, 444
BsnI	GGCC	3 cut(s)	5, 353, 516
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	4 cut(s)	238, 373, 382, 387
BspACI	CCGC	5 cut(s)	77, 315, 354, 452, 474
BspANI	GGCC	3 cut(s)	5, 353, 516
BspCNI	CTCAG	1 cut(s)	461
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	487
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	233, 382
BspT107I	GGYRCC	1 cut(s)	544
BsrGI	TGTACA	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	147, 416
BssECI	CCNNGG	5 cut(s)	6, 80, 129, 425, 436
BssMI	GATC	4 cut(s)	238, 373, 382, 387
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	10, 437
Bst6I	CTCTTC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	286, 498
BstDEI	CTNAG	2 cut(s)	448, 573
BstDSI	CCRYGG	3 cut(s)	6, 425, 436
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	4 cut(s)	241, 376, 385, 390
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	4 cut(s)	238, 373, 382, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 497, 506
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	2 cut(s)	483, 549
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	2 cut(s)	238, 382
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	2 cut(s)	238, 382
BsuRI	GGCC	3 cut(s)	5, 353, 516
BtgI	CCRYGG	3 cut(s)	6, 425, 436
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	2 cut(s)	252, 480
Cac8I	GCNNGC	2 cut(s)	286, 498
CaiI	CAGNNNCTG	1 cut(s)	455
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	458
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	2 cut(s)	448, 573
DpnI	GATC	4 cut(s)	240, 375, 384, 389
DpnII	GATC	4 cut(s)	238, 373, 382, 387
EaeI	YGGCCR	3 cut(s)	3, 351, 514
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	80
FaiI	YATR	6 cut(s)	53, 67, 69, 158, 202, 551
FaqI	GGGAC	2 cut(s)	428, 444
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	77, 354, 357, 453
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	77, 354, 357, 453
FspBI	CTAG	2 cut(s)	257, 285
GluI	GCNGC	4 cut(s)	77, 354, 357, 453
GsaI	CCCAGC	1 cut(s)	209
HaeIII	GGCC	3 cut(s)	5, 353, 516
HapII	CCGG	2 cut(s)	131, 272
HgaI	GACGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	2 cut(s)	131, 272
HphI	GGTGA	3 cut(s)	7, 377, 419
Hpy188I	TCNGA	5 cut(s)	179, 187, 387, 392, 403
Hpy188III	TCNNGA	2 cut(s)	43, 291
HpyCH4III	ACNGT	2 cut(s)	10, 437
HpyCH4V	TGCA	3 cut(s)	485, 496, 565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 497, 506
HpyF3I	CTNAG	2 cut(s)	448, 573
Kzo9I	GATC	4 cut(s)	238, 373, 382, 387
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	429, 483
MaeI	CTAG	2 cut(s)	257, 285
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	4 cut(s)	240, 375, 384, 389
MboI	GATC	4 cut(s)	238, 373, 382, 387
MboII	GAAGA	2 cut(s)	31, 248
MflI	RGATCY	2 cut(s)	238, 382
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	521
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	9 cut(s)	115, 157, 291, 311, 317, 342, 434, 470, 524
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	247
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	356, 452
MspI	CCGG	2 cut(s)	131, 272
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	82, 497, 506
NciI	CCSGG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	4 cut(s)	238, 373, 382, 387
NheI	GCTAGC	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	2 cut(s)	319, 433
PdmI	GAANNNNTTC	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	78, 355, 358, 454
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	546
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	2 cut(s)	238, 382
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	77, 354, 357, 453
Sau3AI	GATC	4 cut(s)	238, 373, 382, 387
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	7 cut(s)	24, 151, 258, 290, 322, 465, 535
SfaNI	GCATC	2 cut(s)	429, 483
SfcI	CTRYAG	2 cut(s)	483, 549
SmiMI	CAYNNNNRTG	1 cut(s)	247
Sse9I	AATT	1 cut(s)	521
SsiI	CCGC	5 cut(s)	77, 315, 354, 452, 474
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	2 cut(s)	257, 285
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	10, 437
TaqI	TCGA	4 cut(s)	111, 212, 292, 322
TasI	AATT	1 cut(s)	521
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	3 cut(s)	79, 356, 455
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	2 cut(s)	252, 487
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	407
TspRI	CASTG	2 cut(s)	252, 487
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	257, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.