RLG00000009057

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004258
Physical Location & Seq
Reverse (-)
45763111 .. 45763872
762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009057

Sequence Viewer

Length: 690 bp
ATGGCCAAGGTCATCACTAACCTTGTGGTTCACTGTCTCAGCCTGCTGGCTGTGTTCGATTTGTCATCTGGAGAGCCGCCTTGGTCTGAGGCTTCTCTTTCTTCCTCTGTCGCTGCTTTGGGTTGTCTACTGGCGCGTCGACTGGAGGATGGTGTTATGGTGGAAGGATTGGTCTTCGGACTTTCCGAGGAGCGTCCGCTATGGCTGGGTTCGTCTCTAGGGCGAAACTTAATGGTAGATCGATCGGTGATTGTTGGGGTTTGGCTGGAAGATTTTGTTGGTTTTGGACAGGGGCTGGCCAGGGACGGTGGAGGTCGGAGATTAAGTTCTCTTCGGGTCGCTGAGATGGGTGAGGCTGGTTGTCGAGATCTGATCCGCTTTGCTTCTGATAGTGGGTGGAACGGCGTTGCTTGGGCACATGGCAGTGCAGGATTCTCAGCTGTGGTGCGTGCTCTCGGTGGCGGAGGCTTGGCAGCGGCTGCAAAGGATCACTGTGCTGGTGGCCGAAAACTGATTGGAGATGGTGATTTTGGGTTCCAGAGTTGTTGGACTTGGGCTGGACTTGTGCTCATGGTTGGGGTTGTTGGGCCCGTGTTTGGAAGTTGGGTTCCTTGTGGGCTGGATATTGGACTGCAAGGGTCTCTTATTGGGCTAAGGCAGATTGGAACTTCTCAATTGGCGCAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

23.76

Weight (kDa)

5.59

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 127, 139
AccII CGCG 1 cut(s) 136
AciI CCGC 5 cut(s) 77, 197, 376, 462, 476
AclWI GGATC 2 cut(s) 367, 495
AcoI YGGCCR 3 cut(s) 3, 297, 502
AfiI CCNNNNNNNGG 1 cut(s) 596
AjnI CCWGG 1 cut(s) 299
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AloI GAACNNNNNNTCC 4 cut(s) 310, 342, 591, 623
AluBI AGCT 2 cut(s) 440, 685
AluI AGCT 2 cut(s) 440, 685
Alw21I GWGCWC 2 cut(s) 454, 570
Alw26I GTCTC 3 cut(s) 41, 219, 645
AlwI GGATC 2 cut(s) 367, 495
AlwNI CAGNNNCTG 2 cut(s) 295, 479
AoxI GGCC 4 cut(s) 3, 297, 502, 587
ApaI GGGCCC 1 cut(s) 591
ApeKI GCWGC 4 cut(s) 113, 473, 479, 682
AspLEI GCGC 2 cut(s) 136, 682
AspS9I GGNCC 2 cut(s) 587, 588
AsuHPI GGTGA 3 cut(s) 259, 362, 536
BaeGI GKGCMC 2 cut(s) 418, 591
BalI TGGCCA 2 cut(s) 5, 299
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 2 cut(s) 454, 570
BbvI GCAGC 3 cut(s) 100, 466, 485
BccI CCATC 3 cut(s) 143, 340, 515
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 41, 219, 645
BfaI CTAG 1 cut(s) 218
BglII AGATCT 1 cut(s) 367
BisI GCNGC 6 cut(s) 77, 114, 474, 477, 480, 683
BlsI GCNGC 6 cut(s) 78, 115, 475, 478, 481, 684
Bme1390I CCNGG 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 587, 588
BmiI GGNNCC 3 cut(s) 536, 589, 609
BmrFI CCNGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 166
BpmI CTGGAG 2 cut(s) 90, 164
Bpu10I CCTNAGC 1 cut(s) 653
Bsa29I ATCGAT 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 645
BsaJI CCNNGG 4 cut(s) 6, 80, 186, 300
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse1I ACTGG 2 cut(s) 135, 147
BseBI CCWGG 1 cut(s) 301
BseCI ATCGAT 1 cut(s) 241
BseDI CCNNGG 4 cut(s) 6, 80, 186, 300
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMII CTCAG 4 cut(s) 52, 78, 333, 450
BseNI ACTGG 2 cut(s) 135, 147
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 2 cut(s) 418, 591
BseXI GCAGC 3 cut(s) 100, 466, 485
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 136
Bsh1285I CGRYCG 1 cut(s) 245
BshFI GGCC 4 cut(s) 5, 299, 504, 589
BshVI ATCGAT 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 245
BsiHKAI GWGCWC 2 cut(s) 454, 570
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 3 cut(s) 41, 219, 645
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 4 cut(s) 5, 299, 504, 589
Bso31I GGTCTC 1 cut(s) 645
Bsp120I GGGCCC 1 cut(s) 587
Bsp1286I GDGCHC 4 cut(s) 418, 454, 570, 591
Bsp143I GATC 5 cut(s) 238, 242, 367, 372, 487
BspACI CCGC 5 cut(s) 77, 197, 376, 462, 476
BspANI GGCC 4 cut(s) 5, 299, 504, 589
BspCNI CTCAG 4 cut(s) 51, 79, 334, 449
BspDI ATCGAT 1 cut(s) 241
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 3 cut(s) 536, 589, 609
BspPI GGATC 2 cut(s) 367, 495
BspTNI GGTCTC 1 cut(s) 645
BsrI ACTGG 2 cut(s) 135, 147
BssECI CCNNGG 4 cut(s) 6, 80, 186, 300
BssMI GATC 5 cut(s) 238, 242, 367, 372, 487
BssT1I CCWWGG 2 cut(s) 6, 80
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 3 cut(s) 35, 308, 494
Bst6I CTCTTC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 4 cut(s) 44, 48, 297, 450
BstDEI CTNAG 5 cut(s) 38, 87, 342, 436, 653
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 136
BstHHI GCGC 2 cut(s) 136, 682
BstKTI GATC 5 cut(s) 241, 245, 370, 375, 490
BstMAI GTCTC 3 cut(s) 41, 219, 645
BstMBI GATC 5 cut(s) 238, 242, 367, 372, 487
BstMCI CGRYCG 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstSLI GKGCMC 2 cut(s) 418, 591
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 3 cut(s) 100, 466, 485
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
Bsu15I ATCGAT 1 cut(s) 241
BsuRI GGCC 4 cut(s) 5, 299, 504, 589
BsuTUI ATCGAT 1 cut(s) 241
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 3 cut(s) 31, 430, 490
Cac8I GCNNGC 4 cut(s) 44, 48, 297, 450
CaiI CAGNNNCTG 2 cut(s) 295, 479
CfoI GCGC 2 cut(s) 136, 682
Cfr13I GGNCC 2 cut(s) 587, 588
ClaI ATCGAT 1 cut(s) 241
CseI GACGC 2 cut(s) 125, 182
CviAII CATG 2 cut(s) 419, 571
DdeI CTNAG 5 cut(s) 38, 87, 342, 436, 653
DpnI GATC 5 cut(s) 240, 244, 369, 374, 489
DpnII GATC 5 cut(s) 238, 242, 367, 372, 487
EaeI YGGCCR 3 cut(s) 3, 297, 502
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
EciI GGCGGA 1 cut(s) 477
Eco130I CCWWGG 2 cut(s) 6, 80
Eco24I GRGCYC 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 2 cut(s) 6, 80
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 2 cut(s) 6, 80
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 2 cut(s) 422, 574
FaiI YATR 4 cut(s) 158, 202, 420, 572
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 418, 570
FblI GTMKAC 2 cut(s) 127, 139
Fnu4HI GCNGC 6 cut(s) 77, 114, 474, 477, 480, 683
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 6 cut(s) 77, 114, 474, 477, 480, 683
FspBI CTAG 1 cut(s) 218
GlaI GCGC 2 cut(s) 135, 681
GluI GCNGC 6 cut(s) 77, 114, 474, 477, 480, 683
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 2 cut(s) 90, 164
HaeIII GGCC 4 cut(s) 5, 299, 504, 589
HgaI GACGC 2 cut(s) 125, 182
HhaI GCGC 2 cut(s) 136, 682
Hin1II CATG 2 cut(s) 422, 574
Hin6I GCGC 2 cut(s) 134, 680
HinP1I GCGC 2 cut(s) 134, 680
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 1 cut(s) 432
HphI GGTGA 3 cut(s) 259, 362, 536
Hpy166II GTNNAC 3 cut(s) 31, 128, 140
Hpy188I TCNGA 7 cut(s) 88, 179, 187, 318, 372, 388, 689
Hpy188III TCNNGA 3 cut(s) 69, 365, 538
Hpy8I GTNNAC 3 cut(s) 31, 128, 140
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 35, 308, 494
HpyCH4V TGCA 3 cut(s) 428, 482, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 5 cut(s) 38, 87, 342, 436, 653
Hsp92II CATG 2 cut(s) 422, 574
HspAI GCGC 2 cut(s) 134, 680
Kzo9I GATC 5 cut(s) 238, 242, 367, 372, 487
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 3 cut(s) 100, 466, 485
MaeI CTAG 1 cut(s) 218
MalI GATC 5 cut(s) 240, 244, 369, 374, 489
MboI GATC 5 cut(s) 238, 242, 367, 372, 487
MboII GAAGA 4 cut(s) 93, 166, 281, 323
MfeI CAATTG 1 cut(s) 674
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 4 cut(s) 418, 454, 570, 591
MlsI TGGCCA 2 cut(s) 5, 299
MluCI AATT 1 cut(s) 674
MluNI TGGCCA 2 cut(s) 5, 299
MmeI TCCRAC 2 cut(s) 296, 527
MnlI CCTC 7 cut(s) 82, 115, 139, 181, 305, 346, 458
Mox20I TGGCCA 2 cut(s) 5, 299
MscI TGGCCA 2 cut(s) 5, 299
MseI TTAA 2 cut(s) 230, 323
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 2 cut(s) 5, 299
MspA1I CMGCKG 2 cut(s) 440, 476
MspR9I CCNGG 1 cut(s) 301
MunI CAATTG 1 cut(s) 674
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 479
NdeII GATC 5 cut(s) 238, 242, 367, 372, 487
NlaIII CATG 2 cut(s) 422, 574
NlaIV GGNNCC 3 cut(s) 536, 589, 609
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 1 cut(s) 432
PkrI GCNGC 6 cut(s) 78, 115, 475, 478, 481, 684
Ple19I CGATCG 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 536, 589, 609
PspOMI GGGCCC 1 cut(s) 587
PspPI GGNCC 2 cut(s) 587, 588
PstNI CAGNNNCTG 2 cut(s) 295, 479
PsuI RGATCY 1 cut(s) 367
PvuI CGATCG 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 440
RseI CAYNNNNRTG 1 cut(s) 423
SalI GTCGAC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 230, 323
SatI GCNGC 6 cut(s) 77, 114, 474, 477, 480, 683
Sau3AI GATC 5 cut(s) 238, 242, 367, 372, 487
Sau96I GGNCC 2 cut(s) 587, 588
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 4 cut(s) 418, 454, 570, 591
SetI ASST 5 cut(s) 12, 24, 316, 442, 687
SmiMI CAYNNNNRTG 1 cut(s) 423
Sse9I AATT 1 cut(s) 674
SsiI CCGC 5 cut(s) 77, 197, 376, 462, 476
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 2 cut(s) 6, 80
TaaI ACNGT 3 cut(s) 35, 308, 494
TaqI TCGA 4 cut(s) 57, 139, 241, 364
TasI AATT 1 cut(s) 674
TauI GCSGC 2 cut(s) 79, 479
TfiI GAWTC 1 cut(s) 432
Tru1I TTAA 2 cut(s) 230, 323
Tru9I TTAA 2 cut(s) 230, 323
TscAI CASTG 3 cut(s) 38, 430, 497
TseI GCWGC 4 cut(s) 113, 473, 479, 682
TspRI CASTG 3 cut(s) 38, 430, 497
XmiI GTMKAC 2 cut(s) 127, 139
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.