RLG00000004051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004258
Physical Location & Seq
Reverse (-)
55670271 .. 55670748
478 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004051

Sequence Viewer

Length: 387 bp
ATGGTGGGCGGCTTGTTTTTTGGACTCTCTGAAGAGCATTTGCTATGGCTAGATTTGACCTTGGGACGTAGCTCAATGGAGGATCCAACTGAGAATTGGCTAGTTGGGGATTTGCTGCAAGAGTTCGTTGGCTTTCGAAAGGGGTCGATCAAGGACGGAGGAGCTGGGAGGACGCCTCATGTGGACACGGTGGTGGAGGCTTCTCAGCAGCGGTGCGAGCGTTCGATGGCAGAGACCTCGCAGCAACGGCTCGCGCTCATGGTTTTGGTGGCCGGAAACTGTTGGGTGGTGGTGTTGGGGTGCCCACAGCAGTCTCCATGCTTTGGGCCTTATTCGGGGTTATGGGCTGCTAGACTGGTATTTGGGTTCCAGAGTTGTTGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.07

Weight (kDa)

5.02

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 300
AccB7I CCANNNNNTGG 1 cut(s) 323
AccII CGCG 1 cut(s) 254
AciI CCGC 2 cut(s) 9, 211
AclWI GGATC 2 cut(s) 77, 90
AcoI YGGCCR 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 323, 335
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 2 cut(s) 72, 164
AluI AGCT 2 cut(s) 72, 164
Alw26I GTCTC 2 cut(s) 227, 318
AlwI GGATC 2 cut(s) 77, 90
AoxI GGCC 3 cut(s) 270, 326, 381
ApeKI GCWGC 4 cut(s) 115, 208, 241, 347
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 326, 381
AsuII TTCGAA 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 305
BamHI GGATCC 1 cut(s) 82
BanI GGYRCC 1 cut(s) 300
BbvI GCAGC 4 cut(s) 102, 220, 253, 334
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 263
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BcoDI GTCTC 2 cut(s) 227, 318
BfaI CTAG 3 cut(s) 50, 101, 351
BisI GCNGC 5 cut(s) 10, 116, 209, 242, 348
BlsI GCNGC 5 cut(s) 11, 117, 210, 243, 349
BmgT120I GGNCC 2 cut(s) 326, 381
BmiI GGNNCC 3 cut(s) 84, 302, 368
BplI GAGNNNNNCTC 2 cut(s) 160, 192
Bpu14I TTCGAA 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 335
Bse1I ACTGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 323, 335
BseMII CTCAG 2 cut(s) 81, 218
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 4 cut(s) 102, 220, 253, 334
BseYI CCCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 3 cut(s) 272, 328, 383
BshNI GGYRCC 1 cut(s) 300
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 323, 335
BsmAI GTCTC 2 cut(s) 227, 318
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 3 cut(s) 272, 328, 383
Bso31I GGTCTC 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 82, 147
BspACI CCGC 2 cut(s) 9, 211
BspANI GGCC 3 cut(s) 272, 328, 383
BspCNI CTCAG 2 cut(s) 82, 217
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 3 cut(s) 84, 302, 368
BspPI GGATC 2 cut(s) 77, 90
BspQI GCTCTTC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 300
BspTNI GGTCTC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 82, 147
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 190, 281
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 218, 252
BstDEI CTNAG 2 cut(s) 90, 204
BstFNI CGCG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 2 cut(s) 85, 150
BstMAI GTCTC 2 cut(s) 227, 318
BstMBI GATC 2 cut(s) 82, 147
BstMWI GCNNNNNNNGC 2 cut(s) 217, 247
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 102, 220, 253, 334
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 3 cut(s) 272, 328, 383
Cac8I GCNNGC 2 cut(s) 218, 252
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 326, 381
CseI GACGC 1 cut(s) 181
CviAII CATG 3 cut(s) 179, 259, 318
DdeI CTNAG 2 cut(s) 90, 204
DpnI GATC 2 cut(s) 84, 149
DpnII GATC 2 cut(s) 82, 147
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 3 cut(s) 182, 262, 321
FaiI YATR 5 cut(s) 46, 180, 260, 319, 343
FaqI GGGAC 1 cut(s) 78
FatI CATG 3 cut(s) 178, 258, 317
Fnu4HI GCNGC 5 cut(s) 10, 116, 209, 242, 348
Fsp4HI GCNGC 5 cut(s) 10, 116, 209, 242, 348
FspBI CTAG 3 cut(s) 50, 101, 351
GlaI GCGC 1 cut(s) 255
GluI GCNGC 5 cut(s) 10, 116, 209, 242, 348
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 3 cut(s) 272, 328, 383
HapII CCGG 1 cut(s) 273
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 3 cut(s) 182, 262, 321
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 1 cut(s) 24
HpaII CCGG 1 cut(s) 273
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 190, 281
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 247
HpyF3I CTNAG 2 cut(s) 90, 204
HpySE526I ACGT 1 cut(s) 67
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 3 cut(s) 182, 262, 321
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 2 cut(s) 82, 147
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 4 cut(s) 150, 286, 341, 383
Lsp1109I GCAGC 4 cut(s) 102, 220, 253, 334
MaeI CTAG 3 cut(s) 50, 101, 351
MaeII ACGT 1 cut(s) 67
MalI GATC 2 cut(s) 84, 149
MboI GATC 2 cut(s) 82, 147
MboII GAAGA 1 cut(s) 44
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 6 cut(s) 73, 152, 162, 186, 190, 247
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 217, 247
NdeII GATC 2 cut(s) 82, 147
NlaIII CATG 3 cut(s) 182, 262, 321
NlaIV GGNNCC 3 cut(s) 84, 302, 368
NspV TTCGAA 1 cut(s) 136
OliI CACNNNNGTG 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 5 cut(s) 11, 117, 210, 243, 349
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 164
PspN4I GGNNCC 3 cut(s) 84, 302, 368
PspPI GGNCC 2 cut(s) 326, 381
PsuI RGATCY 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 27
SatI GCNGC 5 cut(s) 10, 116, 209, 242, 348
Sau3AI GATC 2 cut(s) 82, 147
Sau96I GGNCC 2 cut(s) 326, 381
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 1 cut(s) 305
SetI ASST 5 cut(s) 62, 70, 74, 166, 239
SfuI TTCGAA 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 1 cut(s) 94
SsiI CCGC 2 cut(s) 9, 211
SspMI CTAG 3 cut(s) 50, 101, 351
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 190, 281
TaiI ACGT 1 cut(s) 70
TaqI TCGA 3 cut(s) 136, 146, 224
TasI AATT 1 cut(s) 94
TauI GCSGC 1 cut(s) 12
TseI GCWGC 4 cut(s) 115, 208, 241, 347
TspGWI ACGGA 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XspI CTAG 3 cut(s) 50, 101, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.