Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Forward (+)

30631887 .. 30634673

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG298200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTAAGTTCGACTTTGGGGCAAAGATTAATGGTAGATCCATCGGTGCTTGTTGGGGTTTGGCCGGAAGATTTCGCTGGTTCTCGATAGGGGCCGACCAGGGACAGCGGAGGTCAGGGGTGAGATATTTTCATATCGTAGACATGGGAGAGACTGATCGTGGAGATCTGATCCGAATAGCTTCTAATAGCGGTTGGGACGTCATCGCTCATGGACACTGTGGTGGAGGCTTCTCGACGGCTCTCGGTGGAGGAAGCCTTGCAGCGGCGGTGAGGGCTCACGGTGCTGGTGGCCGAAAATTGTTTGGAGATGGTGTTGGGGTACCCATAGCAGCTGCTAAGTTTGGTGGGTGTCGTCGGAAGCTTCCACGATCGATGGCGGCGGGGCTTCATCAGGAGCTTTCTGGACATGTGATGGTGGCGTGGCTATTGCGATTTTTTTGGGTGGTTGGGGTGAGGTGCGACTTTGGTGGTCTGGGAGGATCACTAAAGTGGCAGGGCCATGGTGGATCTGGAACGATTGTGGTGGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

18.63

Weight (kDa)

10.63

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
Acc65I	GGTACC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	6 cut(s)	109, 192, 266, 269, 380, 383
AclWI	GGATC	4 cut(s)	33, 166, 490, 517
AcoI	YGGCCR	2 cut(s)	63, 292
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	99
AleI	CACNNNNGTG	2 cut(s)	222, 490
AluBI	AGCT	4 cut(s)	182, 335, 364, 400
AluI	AGCT	4 cut(s)	182, 335, 364, 400
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	4 cut(s)	33, 166, 490, 517
AoxI	GGCC	4 cut(s)	63, 93, 292, 499
ApeKI	GCWGC	3 cut(s)	263, 332, 335
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	181
Asp718I	GGTACC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	93, 499
AsuHPI	GGTGA	3 cut(s)	133, 283, 466
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	280
BbvI	GCAGC	3 cut(s)	275, 322, 344
BccI	CCATC	4 cut(s)	50, 305, 370, 409
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	146
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	5 cut(s)	264, 267, 333, 336, 381
BlsI	GCNGC	5 cut(s)	265, 268, 334, 337, 382
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	93, 499
BmiI	GGNNCC	2 cut(s)	94, 324
BmrFI	CCNGG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	100, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	100, 502
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseXI	GCAGC	3 cut(s)	275, 322, 344
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	65, 95, 294, 501
BshNI	GGYRCC	1 cut(s)	322
BshVI	ATCGAT	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	117, 212
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	117, 212
BsnI	GGCC	4 cut(s)	65, 95, 294, 501
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	7 cut(s)	38, 157, 166, 171, 371, 482, 509
Bsp19I	CCATGG	1 cut(s)	502
BspACI	CCGC	6 cut(s)	109, 192, 266, 269, 380, 383
BspANI	GGCC	4 cut(s)	65, 95, 294, 501
BspDI	ATCGAT	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	94, 324
BspPI	GGATC	4 cut(s)	33, 166, 490, 517
BspT107I	GGYRCC	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	100, 502
BssMI	GATC	7 cut(s)	38, 157, 166, 171, 371, 482, 509
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	221, 284
BstACI	GRCGYC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	6, 339
BstDSI	CCRYGG	1 cut(s)	502
BstKTI	GATC	7 cut(s)	41, 160, 169, 174, 374, 485, 512
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	7 cut(s)	38, 157, 166, 171, 371, 482, 509
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 284
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	275, 322, 344
BstX2I	RGATCY	3 cut(s)	38, 166, 509
BstYI	RGATCY	3 cut(s)	38, 166, 509
Bsu15I	ATCGAT	1 cut(s)	374
BsuRI	GGCC	4 cut(s)	65, 95, 294, 501
BsuTUI	ATCGAT	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	502
BtgZI	GCGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	93, 499
ClaI	ATCGAT	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	145, 212, 410, 503
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	2 cut(s)	6, 339
DpnI	GATC	7 cut(s)	40, 159, 168, 173, 373, 484, 511
DpnII	GATC	7 cut(s)	38, 157, 166, 171, 371, 482, 509
EaeI	YGGCCR	2 cut(s)	63, 292
Eco130I	CCWWGG	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	4 cut(s)	148, 215, 413, 506
FaiI	YATR	6 cut(s)	135, 146, 213, 329, 411, 504
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	117, 212
FatI	CATG	4 cut(s)	144, 211, 409, 502
FauI	CCCGC	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	264, 267, 333, 336, 381
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	5 cut(s)	264, 267, 333, 336, 381
GluI	GCNGC	5 cut(s)	264, 267, 333, 336, 381
HaeIII	GGCC	4 cut(s)	65, 95, 294, 501
HapII	CCGG	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	148, 215, 413, 506
HindIII	AAGCTT	1 cut(s)	362
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	3 cut(s)	133, 283, 466
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	171, 176, 360
Hpy188III	TCNNGA	5 cut(s)	85, 235, 395, 405, 513
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	2 cut(s)	241, 360
HpyCH4III	ACNGT	2 cut(s)	221, 284
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 284
HpyF3I	CTNAG	2 cut(s)	6, 339
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	148, 215, 413, 506
KpnI	GGTACC	1 cut(s)	326
Kzo9I	GATC	7 cut(s)	38, 157, 166, 171, 371, 482, 509
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	3 cut(s)	275, 322, 344
MaeII	ACGT	1 cut(s)	201
MalI	GATC	7 cut(s)	40, 159, 168, 173, 373, 484, 511
MboI	GATC	7 cut(s)	38, 157, 166, 171, 371, 482, 509
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	3 cut(s)	38, 166, 509
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	6 cut(s)	105, 221, 245, 267, 450, 473
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	222, 490
MspA1I	CMGCKG	3 cut(s)	109, 266, 335
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	275, 284
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	7 cut(s)	38, 157, 166, 171, 371, 482, 509
NlaIII	CATG	4 cut(s)	148, 215, 413, 506
NlaIV	GGNNCC	2 cut(s)	94, 324
NspI	RCATGY	1 cut(s)	413
OliI	CACNNNNGTG	2 cut(s)	222, 490
PciI	ACATGT	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	265, 268, 334, 337, 382
Ple19I	CGATCG	1 cut(s)	374
PscI	ACATGT	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	94, 324
PspPI	GGNCC	2 cut(s)	93, 499
PsuI	RGATCY	3 cut(s)	38, 166, 509
PvuI	CGATCG	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	222, 490
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	5 cut(s)	264, 267, 333, 336, 381
Sau3AI	GATC	7 cut(s)	38, 157, 166, 171, 371, 482, 509
Sau96I	GGNCC	2 cut(s)	93, 499
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	7 cut(s)	116, 184, 204, 337, 366, 402, 461
SmiMI	CAYNNNNRTG	2 cut(s)	222, 490
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	6 cut(s)	109, 192, 266, 269, 380, 383
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	221, 284
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	12, 86, 236, 374
TasI	AATT	1 cut(s)	299
TauI	GCSGC	2 cut(s)	269, 383
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	3 cut(s)	263, 332, 335
TspDTI	ATGAA	2 cut(s)	122, 380
TspRI	CASTG	1 cut(s)	224
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	181
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.