RchiOBHm_Chr6g0307831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004258
Physical Location & Seq
Forward (+)
66055137 .. 66056355
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27676

Sequence Viewer

Length: 447 bp
ATGAAGGATCCAACTGGGAATTGGCTAGTTAGGGATTTGCTGGAAGGGTTCGTTGGCTTTCAAAGGGGGTCGATCAAGGACAACGGAGGTCTGGGGTTAACTCTGCTGCGATCTGATTGGGTTGATTATGAGGTTGCGACTTGGTATGGAGATCTGACCCGGTTTGCTTTTGTTGGCGGCTGGGACGGCGTCTCACTGGGACACTGTGGTAGAGGCTTCTCGGCGGCGGTGCGAGCGTTCGGTGGCGGATACTGTGCAGCGACGACGCGGGCTCATGGTTCTGGTGGCCAAAAATTGTTGGGTGGTGGTGTTGGGGTGCCCACAGCGGTCTCCATGCTTTGGATTTTATTCTGGGTTATGGGCTGCTCGACTAGTATTTGGGTTCCAGAGTTGTTGGGCCTGAGATGGGTTCTTTTTCATGGGTGGGGCTGTTGGGCTCGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

15.99

Weight (kDa)

8.45

Isoelectric Point (pI)

19.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AccB7I CCANNNNNTGG 1 cut(s) 339
AccII CGCG 1 cut(s) 268
AciI CCGC 6 cut(s) 177, 224, 227, 246, 268, 326
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 2 cut(s) 339, 406
AgsI TTSAA 1 cut(s) 62
AhlI ACTAGT 1 cut(s) 371
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
Alw26I GTCTC 2 cut(s) 196, 334
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 2 cut(s) 286, 397
ApeKI GCWGC 3 cut(s) 106, 257, 363
AspS9I GGNCC 1 cut(s) 397
AsuC2I CCSGG 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 321
BalI TGGCCA 1 cut(s) 288
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 316
BanII GRGCYC 2 cut(s) 274, 439
BbvI GCAGC 3 cut(s) 93, 269, 350
BccI CCATC 1 cut(s) 399
BceAI ACGGC 1 cut(s) 202
BciVI GTATCC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 196, 334
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 2 cut(s) 26, 372
BfuI GTATCC 1 cut(s) 242
BglII AGATCT 1 cut(s) 151
BisI GCNGC 5 cut(s) 107, 178, 225, 258, 364
BlsI GCNGC 5 cut(s) 108, 179, 226, 259, 365
Bme1390I CCNGG 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 3 cut(s) 9, 318, 384
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 2 cut(s) 24, 206
BmuI ACTGGG 2 cut(s) 24, 206
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 334
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 406
Bse1I ACTGG 2 cut(s) 19, 201
BseLI CCNNNNNNNGG 2 cut(s) 339, 406
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 2 cut(s) 19, 201
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 3 cut(s) 93, 269, 350
BseYI CCCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 288, 399
BshNI GGYRCC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 2 cut(s) 197, 213
BslI CCNNNNNNNGG 2 cut(s) 339, 406
BsmAI GTCTC 2 cut(s) 196, 334
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 197, 213
BsnI GGCC 2 cut(s) 288, 399
Bso31I GGTCTC 1 cut(s) 334
Bsp1286I GDGCHC 3 cut(s) 274, 321, 439
Bsp143I GATC 4 cut(s) 7, 72, 110, 151
BspACI CCGC 6 cut(s) 177, 224, 227, 246, 268, 326
BspANI GGCC 2 cut(s) 288, 399
BspCNI CTCAG 1 cut(s) 393
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 9, 318, 384
BspPI GGATC 2 cut(s) 2, 15
BspT107I GGYRCC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 334
BsrI ACTGG 2 cut(s) 19, 201
BssMI GATC 4 cut(s) 7, 72, 110, 151
BssNI GRCGYC 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 206, 254
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 234, 270
BstDEI CTNAG 2 cut(s) 401, 444
BstFNI CGCG 1 cut(s) 268
BstKTI GATC 4 cut(s) 10, 75, 113, 154
BstMAI GTCTC 2 cut(s) 196, 334
BstMBI GATC 4 cut(s) 7, 72, 110, 151
BstMWI GCNNNNNNNGC 2 cut(s) 186, 233
BstSCI CCNGG 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 321
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 93, 269, 350
BstX2I RGATCY 2 cut(s) 7, 151
BstYI RGATCY 2 cut(s) 7, 151
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 288, 399
BtsIMutI CAGTG 2 cut(s) 194, 202
Cac8I GCNNGC 2 cut(s) 234, 270
Cfr13I GGNCC 1 cut(s) 397
CseI GACGC 2 cut(s) 178, 274
Csp6I GTAC 1 cut(s) 441
CviAII CATG 3 cut(s) 275, 334, 419
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 2 cut(s) 401, 444
DpnI GATC 4 cut(s) 9, 74, 112, 153
DpnII GATC 4 cut(s) 7, 72, 110, 151
EaeI YGGCCR 1 cut(s) 286
EciI GGCGGA 1 cut(s) 261
Eco24I GRGCYC 2 cut(s) 274, 439
Eco31I GGTCTC 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 274, 439
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 3 cut(s) 278, 337, 422
FaiI YATR 6 cut(s) 129, 147, 276, 335, 359, 420
FaqI GGGAC 2 cut(s) 197, 213
FatI CATG 3 cut(s) 274, 333, 418
FauI CCCGC 1 cut(s) 261
Fnu4HI GCNGC 5 cut(s) 107, 178, 225, 258, 364
FriOI GRGCYC 2 cut(s) 274, 439
Fsp4HI GCNGC 5 cut(s) 107, 178, 225, 258, 364
FspBI CTAG 2 cut(s) 26, 372
GluI GCNGC 5 cut(s) 107, 178, 225, 258, 364
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 2 cut(s) 288, 399
HapII CCGG 1 cut(s) 160
HgaI GACGC 2 cut(s) 178, 274
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 278, 337, 422
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HpaI GTTAAC 1 cut(s) 99
HpaII CCGG 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 115, 156
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 2 cut(s) 265, 268
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 206, 254
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 233
HpyF3I CTNAG 2 cut(s) 401, 444
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 278, 337, 422
KspAI GTTAAC 1 cut(s) 99
Kzo9I GATC 4 cut(s) 7, 72, 110, 151
LpnPI CCDG 9 cut(s) 26, 77, 166, 173, 182, 267, 337, 399, 413
Lsp1109I GCAGC 3 cut(s) 93, 269, 350
MaeI CTAG 2 cut(s) 26, 372
MalI GATC 4 cut(s) 9, 74, 112, 153
MboI GATC 4 cut(s) 7, 72, 110, 151
MflI RGATCY 2 cut(s) 7, 151
MhlI GDGCHC 3 cut(s) 274, 321, 439
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 2 cut(s) 19, 293
MluNI TGGCCA 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 3 cut(s) 80, 124, 206
Mox20I TGGCCA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 288
MseI TTAA 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 186, 233
NciI CCSGG 1 cut(s) 160
NdeII GATC 4 cut(s) 7, 72, 110, 151
NlaIII CATG 3 cut(s) 278, 337, 422
NlaIV GGNNCC 3 cut(s) 9, 318, 384
NmeAIII GCCGAG 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 5 cut(s) 108, 179, 226, 259, 365
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 9, 318, 384
PspPI GGNCC 1 cut(s) 397
PsuI RGATCY 2 cut(s) 7, 151
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 5 cut(s) 107, 178, 225, 258, 364
Sau3AI GATC 4 cut(s) 7, 72, 110, 151
Sau96I GGNCC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 3 cut(s) 274, 321, 439
SetI ASST 2 cut(s) 91, 135
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 2 cut(s) 19, 293
SsiI CCGC 6 cut(s) 177, 224, 227, 246, 268, 326
SspMI CTAG 2 cut(s) 26, 372
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 206, 254
TaqI TCGA 2 cut(s) 71, 368
TasI AATT 2 cut(s) 19, 293
TauI GCSGC 2 cut(s) 180, 227
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 2 cut(s) 201, 209
TseI GCWGC 3 cut(s) 106, 257, 363
TspDTI ATGAA 2 cut(s) 17, 407
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 2 cut(s) 201, 209
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XspI CTAG 2 cut(s) 26, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.