Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Forward (+)

37063531 .. 37064027

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034124

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCGATCTTTTAGGGCCGCTGACATGGGTGTGGCTACTCGTGCAGATTTGATCCAATGTGTTTCTGATAGCGGCTGGGACGGCGTCGCATGGGGACACCGTTGTGGCAGCTTCTCAGCGATGGTGCAAGCACTCGATGGTGGTGGTCTTACAGTGGCGGTGCGGGGTCACGGTGTGGTGGCCGGAATCTGTTTGGAGGGCTGTTGGGCTCGAGTTTGGATGGTGGGTTCCTTACAGGCTGGATTTTGGGCTGCAAGGATCTCTTCCTGGGCTGAGATTGATTGGAACTTCTCAATTGGGGCAGCTCTGATGAATGAAGACGGAGTGGATGGTGATTCTTCATCCTTTACTCCAAATGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

12.73

Weight (kDa)

4.64

Isoelectric Point (pI)

22.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	18, 72, 158, 163
AclWI	GGATC	2 cut(s)	46, 266
AcoI	YGGCCR	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	84
AdeI	CACNNNGTG	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	266
AleI	CACNNNNGTG	1 cut(s)	102
AloI	GAACNNNNNNTCC	2 cut(s)	211, 243
AluBI	AGCT	2 cut(s)	111, 305
AluI	AGCT	2 cut(s)	111, 305
AlwI	GGATC	2 cut(s)	46, 266
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	2 cut(s)	15, 180
ApeKI	GCWGC	3 cut(s)	108, 251, 302
AspS9I	GGNCC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	120, 238, 314
BccI	CCATC	4 cut(s)	115, 131, 214, 323
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	268
BisI	GCNGC	5 cut(s)	18, 73, 109, 252, 303
BlsI	GCNGC	5 cut(s)	19, 74, 110, 253, 304
Bme1390I	CCNGG	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	3 cut(s)	225, 334, 341
BseMII	CTCAG	2 cut(s)	129, 264
BseXI	GCAGC	3 cut(s)	120, 238, 314
BseYI	CCCAGC	1 cut(s)	75
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	17, 182
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	92, 108
BsmFI	GGGAC	2 cut(s)	92, 108
BsnI	GGCC	2 cut(s)	17, 182
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	5, 51, 258
BspACI	CCGC	4 cut(s)	18, 72, 158, 163
BspANI	GGCC	2 cut(s)	17, 182
BspCNI	CTCAG	2 cut(s)	128, 265
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	2 cut(s)	46, 266
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	3 cut(s)	5, 51, 258
BssNI	GRCGYC	1 cut(s)	84
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	101, 154, 173
Bst6I	CTCTTC	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	115, 273
BstF5I	GGATG	3 cut(s)	225, 334, 341
BstKTI	GATC	3 cut(s)	8, 54, 261
BstMBI	GATC	3 cut(s)	5, 51, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 81
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	120, 238, 314
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	17, 182
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	225, 334, 341
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	15
CseI	GACGC	1 cut(s)	73
CviAII	CATG	2 cut(s)	25, 90
DdeI	CTNAG	2 cut(s)	115, 273
DpnI	GATC	3 cut(s)	7, 53, 260
DpnII	GATC	3 cut(s)	5, 51, 258
DraIII	CACNNNGTG	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	2 cut(s)	28, 93
FaiI	YATR	2 cut(s)	26, 91
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FaqI	GGGAC	2 cut(s)	92, 108
FatI	CATG	2 cut(s)	24, 89
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	18, 73, 109, 252, 303
FokI	GGATG	3 cut(s)	232, 328, 341
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	5 cut(s)	18, 73, 109, 252, 303
GluI	GCNGC	5 cut(s)	18, 73, 109, 252, 303
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	17, 182
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	28, 93
HinfI	GANTC	2 cut(s)	186, 335
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	2 cut(s)	67, 309
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4III	ACNGT	3 cut(s)	101, 154, 173
HpyCH4V	TGCA	3 cut(s)	44, 127, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 81
HpyF3I	CTNAG	2 cut(s)	115, 273
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	28, 93
Kzo9I	GATC	3 cut(s)	5, 51, 258
LpnPI	CCDG	6 cut(s)	61, 196, 221, 225, 253, 280
Lsp1109I	GCAGC	3 cut(s)	120, 238, 314
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	7, 53, 260
MboI	GATC	3 cut(s)	5, 51, 258
MboII	GAAGA	3 cut(s)	255, 329, 330
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	294
MnlI	CCTC	1 cut(s)	190
MseI	TTAA	1 cut(s)	364
MslI	CAYNNNNRTG	2 cut(s)	29, 102
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	41, 81
NdeII	GATC	3 cut(s)	5, 51, 258
NlaIII	CATG	2 cut(s)	28, 93
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	186, 335
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	5 cut(s)	19, 74, 110, 253, 304
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	15
PspXI	VCTCGAGB	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	258
PsyI	GACNNNGTC	1 cut(s)	83
RseI	CAYNNNNRTG	2 cut(s)	29, 102
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	5 cut(s)	18, 73, 109, 252, 303
Sau3AI	GATC	3 cut(s)	5, 51, 258
Sau96I	GGNCC	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	2 cut(s)	113, 307
Sfr274I	CTCGAG	1 cut(s)	210
SlaI	CTCGAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	29, 102
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	294
SsiI	CCGC	4 cut(s)	18, 72, 158, 163
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	3 cut(s)	101, 154, 173
TaqI	TCGA	2 cut(s)	135, 211
TasI	AATT	1 cut(s)	294
TauI	GCSGC	2 cut(s)	20, 75
TfiI	GAWTC	2 cut(s)	186, 335
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	108, 251, 302
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	326, 330, 330
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	159
Tth111I	GACNNNGTC	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.