Rh7BG460800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004258
Physical Location & Seq
Reverse (-)
54595655 .. 54605468
9814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG460800.1

Sequence Viewer

Length: 435 bp
ATGGTGGATGGATTGTTATTCGGACCCTCCGAAGAGCAATCGCTATCGCTGGGTATGACTTTGGGGCGGAGCTCAATGGAGGATCGATCCAGGAATTGGCTAGTTGAGGTTTTGCCGGAGGAGTTCGTTGGCTTTCGAAGGGAGTCGATGAAGGACGACGGAGGTCTAGGGTTGATTCTGACCCGATTTGCTTCTGCTGGCGGTTGGGACGCAGTCTCACAGGGACAGGAAGGTGGCGGCTTCTCGACAGCAATGCGAGCGTTCGGTGGCCAAGGCCTTGCAGCGACGGCGCTGGCTCATGGTTTCGGTGGCCGAAATCTGTTGGGTGGAGGTGTTGGGGTGCCCATAGCAGTCTCCATGCTTTGGGCCTTCTTCTGGGTTATGGGCAGTTGGGCTAATAATATGAAGATCAAAATAGTTAAAGCCAGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.23

Weight (kDa)

5.79

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AccB7I CCANNNNNTGG 2 cut(s) 96, 363
AciI CCGC 3 cut(s) 67, 201, 237
AclWI GGATC 2 cut(s) 81, 90
AcoI YGGCCR 2 cut(s) 268, 310
AfiI CCNNNNNNNGG 3 cut(s) 96, 363, 375
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 220, 358
AlwI GGATC 2 cut(s) 81, 90
AoxI GGCC 4 cut(s) 268, 274, 310, 366
ApeKI GCWGC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 23, 366
AsuII TTCGAA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 345
BalI TGGCCA 1 cut(s) 270
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 2
BceAI ACGGC 1 cut(s) 303
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 220, 358
BfaI CTAG 2 cut(s) 101, 167
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 2 cut(s) 238, 282
BlsI GCNGC 2 cut(s) 239, 283
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 366
BmiI GGNNCC 2 cut(s) 25, 342
BmrFI CCNGG 1 cut(s) 91
BoxI GACNNNNGTC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 363, 375
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 91
BseCI ATCGAT 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 3 cut(s) 96, 363, 375
BseMI GCAATG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 4 cut(s) 270, 276, 312, 368
BshNI GGYRCC 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 2 cut(s) 221, 237
BslI CCNNNNNNNGG 3 cut(s) 96, 363, 375
BsmAI GTCTC 2 cut(s) 220, 358
BsmFI GGGAC 2 cut(s) 221, 237
BsnI GGCC 4 cut(s) 270, 276, 312, 368
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 74, 345
Bsp143I GATC 3 cut(s) 82, 86, 408
BspACI CCGC 3 cut(s) 67, 201, 237
BspANI GGCC 4 cut(s) 270, 276, 312, 368
BspDI ATCGAT 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 25, 342
BspPI GGATC 2 cut(s) 81, 90
BspQI GCTCTTC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 3 cut(s) 82, 86, 408
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 4 cut(s) 199, 258, 294, 427
BstF5I GGATG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 85, 89, 411
BstMAI GTCTC 2 cut(s) 220, 358
BstMBI GATC 3 cut(s) 82, 86, 408
BstMWI GCNNNNNNNGC 2 cut(s) 257, 287
BstNI CCWGG 1 cut(s) 91
BstPAI GACNNNNGTC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 4 cut(s) 270, 276, 312, 368
BsuTUI ATCGAT 1 cut(s) 85
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 4 cut(s) 199, 258, 294, 427
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 23, 366
ClaI ATCGAT 1 cut(s) 85
CseI GACGC 1 cut(s) 218
CviAII CATG 2 cut(s) 299, 358
DpnI GATC 3 cut(s) 84, 88, 410
DpnII GATC 3 cut(s) 82, 86, 408
EaeI YGGCCR 2 cut(s) 268, 310
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 2 cut(s) 302, 361
FaiI YATR 8 cut(s) 56, 300, 347, 359, 383, 404, 431, 433
FaqI GGGAC 2 cut(s) 221, 237
FatI CATG 2 cut(s) 298, 357
Fnu4HI GCNGC 2 cut(s) 238, 282
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 238, 282
FspBI CTAG 2 cut(s) 101, 167
GlaI GCGC 1 cut(s) 291
GluI GCNGC 2 cut(s) 238, 282
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 4 cut(s) 270, 276, 312, 368
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 302, 361
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 2 cut(s) 143, 175
HpaII CCGG 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 23, 31, 180
Hpy188III TCNNGA 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 161, 289
HpyAV CCTTC 4 cut(s) 132, 145, 224, 379
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 287
Hsp92II CATG 2 cut(s) 302, 361
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 3 cut(s) 82, 86, 408
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 35, 76, 103, 129, 183, 206, 212, 278, 361
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 2 cut(s) 101, 167
MalI GATC 3 cut(s) 84, 88, 410
MboI GATC 3 cut(s) 82, 86, 408
MboII GAAGA 3 cut(s) 44, 364, 418
MhlI GDGCHC 2 cut(s) 74, 345
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 6 cut(s) 37, 73, 100, 112, 155, 323
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 1 cut(s) 420
Msp20I TGGCCA 1 cut(s) 270
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 257, 287
NdeII GATC 3 cut(s) 82, 86, 408
NlaIII CATG 2 cut(s) 302, 361
NlaIV GGNNCC 2 cut(s) 25, 342
NspV TTCGAA 1 cut(s) 136
PceI AGGCCT 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 1 cut(s) 175
PflFI GACNNNGTC 1 cut(s) 212
PflMI CCANNNNNTGG 2 cut(s) 96, 363
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 2 cut(s) 239, 283
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 25, 342
PspPI GGNCC 2 cut(s) 23, 366
PsyI GACNNNGTC 1 cut(s) 212
SacI GAGCTC 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 238, 282
Sau3AI GATC 3 cut(s) 82, 86, 408
Sau96I GGNCC 2 cut(s) 23, 366
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 2 cut(s) 74, 345
SetI ASST 5 cut(s) 74, 111, 166, 235, 334
SfuI TTCGAA 1 cut(s) 136
SinI GGWCC 1 cut(s) 23
Sse9I AATT 1 cut(s) 94
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 3 cut(s) 67, 201, 237
SspMI CTAG 2 cut(s) 101, 167
SstI GAGCTC 1 cut(s) 74
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 271
TaqI TCGA 4 cut(s) 85, 136, 146, 245
TasI AATT 1 cut(s) 94
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 164, 419
TspGWI ACGGA 1 cut(s) 174
Tth111I GACNNNGTC 1 cut(s) 212
Van91I CCANNNNNTGG 2 cut(s) 96, 363
VpaK11BI GGWCC 1 cut(s) 23
XspI CTAG 2 cut(s) 101, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.