Rroxscaffold_5G00352810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004258
Physical Location & Seq
Forward (+)
30138429 .. 30139244
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352810.1

Sequence Viewer

Length: 375 bp
ATGGTGGTGATCGAAGGTAGTGAGGGACGTGTGCAGAGGCCGGAGGTGCCGAGCGGTGGTCCGGATCCTCGAGCTTGGCTTCGGTCCGTCCGATGGTGGTTATATAGTGAAGTTGGTGGCCGGAGATCAAGATCTCCGGCTAGTTCCGGAGATGGCAGAGAAAACCGAAGGGGGAGGGCATGGTCTGCCTTTGGTATTGGGAGTGGATGTGACTCTTGGGGCTTTTGGGGTCGATTATGGATACTGGACTTCCCGAGGGCTGGATATTTGGCTGCATGGGCTGAGGTTGATTGGAACTTCTCAATTGGGGCAACTCGGATGAATGAAGACGGAAAGGGTGGTGAAACTTCATCCTCTACTCCAAATGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.74

Weight (kDa)

7.94

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 54
AccIII TCCGGA 2 cut(s) 61, 146
AciI CCGC 1 cut(s) 54
AclWI GGATC 2 cut(s) 59, 72
AcoI YGGCCR 1 cut(s) 118
AfiI CCNNNNNNNGG 3 cut(s) 56, 93, 260
AflIII ACRYGT 1 cut(s) 28
AjiI CACGTC 1 cut(s) 29
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AlwI GGATC 2 cut(s) 59, 72
Ama87I CYCGRG 2 cut(s) 69, 253
Aor13HI TCCGGA 2 cut(s) 61, 146
AoxI GGCC 2 cut(s) 38, 118
ApeKI GCWGC 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 59, 84
AsuHPI GGTGA 2 cut(s) 19, 353
AvaI CYCGRG 2 cut(s) 69, 253
AvaII GGWCC 2 cut(s) 59, 84
BamHI GGATCC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 259
BccI CCATC 2 cut(s) 87, 146
BciVI GTATCC 1 cut(s) 234
BfaI CTAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 234
BglII AGATCT 1 cut(s) 131
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme18I GGWCC 2 cut(s) 59, 84
BmeT110I CYCGRG 2 cut(s) 69, 253
BmgBI CACGTC 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 59, 84
BmiI GGNNCC 2 cut(s) 48, 66
BpiI GAAGAC 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 254
BsaWI WCCGGW 2 cut(s) 61, 146
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 93, 260
Bse1I ACTGG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 130
BseAI TCCGGA 2 cut(s) 61, 146
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 3 cut(s) 212, 324, 350
BseJI GATNNNNATC 1 cut(s) 130
BseLI CCNNNNNNNGG 3 cut(s) 56, 93, 260
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 53
BshFI GGCC 2 cut(s) 40, 120
BshNI GGYRCC 1 cut(s) 46
BsiHKCI CYCGRG 2 cut(s) 69, 253
BsiSI CCGG 5 cut(s) 41, 62, 121, 137, 147
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 3 cut(s) 56, 93, 260
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 2 cut(s) 40, 120
BsoBI CYCGRG 2 cut(s) 69, 253
Bsp13I TCCGGA 2 cut(s) 61, 146
Bsp143I GATC 4 cut(s) 9, 64, 125, 131
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 40, 120
BspCNI CTCAG 1 cut(s) 274
BspEI TCCGGA 2 cut(s) 61, 146
BspLI GGNNCC 2 cut(s) 48, 66
BspPI GGATC 2 cut(s) 59, 72
BspT107I GGYRCC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 4 cut(s) 9, 64, 125, 131
BstAPI GCANNNNNTGC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 3 cut(s) 212, 324, 350
BstKTI GATC 4 cut(s) 12, 67, 128, 134
BstMBI GATC 4 cut(s) 9, 64, 125, 131
BstMWI GCNNNNNNNGC 3 cut(s) 46, 185, 278
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 2 cut(s) 64, 131
BstYI RGATCY 2 cut(s) 64, 131
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 2 cut(s) 40, 120
BtrI CACGTC 1 cut(s) 29
BtsCI GGATG 3 cut(s) 212, 324, 350
Cfr13I GGNCC 2 cut(s) 59, 84
CpoI CGGWCCG 1 cut(s) 84
CspI CGGWCCG 1 cut(s) 84
CviAII CATG 2 cut(s) 180, 276
CviJI RGCY 9 cut(s) 40, 74, 79, 120, 140, 222, 260, 272, 281
CviKI_1 RGCY 9 cut(s) 40, 74, 79, 120, 140, 222, 260, 272, 281
DdeI CTNAG 1 cut(s) 282
DpnI GATC 4 cut(s) 11, 66, 127, 133
DpnII GATC 4 cut(s) 9, 64, 125, 131
EaeI YGGCCR 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 59, 84
Eco88I CYCGRG 2 cut(s) 69, 253
FaeI CATG 2 cut(s) 183, 279
FaiI YATR 5 cut(s) 103, 105, 181, 238, 277
FaqI GGGAC 1 cut(s) 39
FatI CATG 2 cut(s) 179, 275
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 3 cut(s) 219, 331, 337
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 2 cut(s) 40, 120
HapII CCGG 5 cut(s) 41, 62, 121, 137, 147
Hin1II CATG 2 cut(s) 183, 279
HinfI GANTC 1 cut(s) 212
HpaII CCGG 5 cut(s) 41, 62, 121, 137, 147
HphI GGTGA 2 cut(s) 19, 353
Hpy188I TCNGA 2 cut(s) 92, 318
Hpy188III TCNNGA 4 cut(s) 62, 129, 147, 253
HpyAV CCTTC 2 cut(s) 8, 162
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 34, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 185, 278
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 2 cut(s) 183, 279
Kpn2I TCCGGA 2 cut(s) 61, 146
Kzo9I GATC 4 cut(s) 9, 64, 125, 131
LpnPI CCDG 7 cut(s) 54, 75, 134, 150, 160, 230, 246
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 209
MalI GATC 4 cut(s) 11, 66, 127, 133
MbiI CCGCTC 1 cut(s) 54
MboI GATC 4 cut(s) 9, 64, 125, 131
MboII GAAGA 1 cut(s) 338
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 2 cut(s) 64, 131
MluCI AATT 1 cut(s) 303
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 8 cut(s) 16, 30, 37, 78, 168, 249, 277, 364
MroI TCCGGA 2 cut(s) 61, 146
MseI TTAA 1 cut(s) 373
MspI CCGG 5 cut(s) 41, 62, 121, 137, 147
MunI CAATTG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 46, 185, 278
NdeII GATC 4 cut(s) 9, 64, 125, 131
NlaIII CATG 2 cut(s) 183, 279
NlaIV GGNNCC 2 cut(s) 48, 66
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 48, 66
PspPI GGNCC 2 cut(s) 59, 84
PspXI VCTCGAGB 1 cut(s) 69
PsuI RGATCY 2 cut(s) 64, 131
Rsr2I CGGWCCG 1 cut(s) 84
RsrII CGGWCCG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 4 cut(s) 9, 64, 125, 131
Sau96I GGNCC 2 cut(s) 59, 84
SchI GAGTC 1 cut(s) 206
SetI ASST 5 cut(s) 19, 31, 48, 76, 288
Sfr274I CTCGAG 1 cut(s) 69
SinI GGWCC 2 cut(s) 59, 84
SlaI CTCGAG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 1 cut(s) 303
SsiI CCGC 1 cut(s) 54
SspMI CTAG 1 cut(s) 141
TaiI ACGT 1 cut(s) 31
TaqI TCGA 3 cut(s) 12, 70, 232
TaqII GACCGA 1 cut(s) 72
TasI AATT 1 cut(s) 303
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 335, 339, 339
TspGWI ACGGA 2 cut(s) 76, 345
VpaK11BI GGWCC 2 cut(s) 59, 84
XhoI CTCGAG 1 cut(s) 69
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.