Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Reverse (-)

66882631 .. 66883961

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG517600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGTGTGGCTGCTCGTGAAGATTTGATCCGATGTGCTTCTGATAGCGGCTGGGACGGCGTCGCACGGGGACACGGTAGTGGCAGCTTCTCGGCGGCGGTGCAACCACTCGATAGTGGAGGTCTTGTAGCGGCGGCGCGGGTTCAGGGTGCTGGTGGCCGGAATCTGTCTGGAGATCAAGTACTTGAACCTCTGGTGCGGATCGGAAAAGTGCTTGAGGTTTTAGAGAAATCCATCAGTTCACGTGCTGGTGCGGAGGGAGCCCAAAATTTTCAAAAGGAGAATATATATGCTACTGAAAGAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

103

Amino Acids

10.61

Weight (kDa)

5.76

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	139
AciI	CCGC	8 cut(s)	48, 95, 98, 131, 134, 139, 199, 254
AclWI	GGATC	2 cut(s)	22, 209
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	268
AcvI	CACGTG	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	188, 275
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
AlwI	GGATC	2 cut(s)	22, 209
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	11, 84
ApoI	RAATTY	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	265
BauI	CACGAG	1 cut(s)	15
BbrPI	CACGTG	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	73
BisI	GCNGC	6 cut(s)	12, 49, 85, 96, 132, 135
BlsI	GCNGC	6 cut(s)	13, 50, 86, 97, 133, 136
BmcAI	AGTACT	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	60
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 165, 195
BseXI	GCAGC	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	68, 84
BsmFI	GGGAC	2 cut(s)	68, 84
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	27, 175, 201
BspACI	CCGC	8 cut(s)	48, 95, 98, 131, 134, 139, 199, 254
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	22, 209
BssMI	GATC	3 cut(s)	27, 175, 201
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	3 cut(s)	30, 178, 204
BstMBI	GATC	3 cut(s)	27, 175, 201
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 260
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	139
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	182
CviJI	RGCY	5 cut(s)	11, 51, 87, 159, 263
CviKI_1	RGCY	5 cut(s)	11, 51, 87, 159, 263
CviQI	GTAC	1 cut(s)	182
DpnI	GATC	3 cut(s)	29, 177, 203
DpnII	GATC	3 cut(s)	27, 175, 201
EaeI	YGGCCR	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	265
Eco72I	CACGTG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	265
FaiI	YATR	3 cut(s)	287, 289, 291
FaqI	GGGAC	2 cut(s)	68, 84
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	6 cut(s)	12, 49, 85, 96, 132, 135
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	6 cut(s)	12, 49, 85, 96, 132, 135
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	6 cut(s)	12, 49, 85, 96, 132, 135
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	32, 43, 206
Hpy188III	TCNNGA	2 cut(s)	17, 171
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 260
HpySE526I	ACGT	1 cut(s)	244
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	27, 175, 201
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	7 cut(s)	37, 131, 138, 156, 173, 179, 234
Lsp1109I	GCAGC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	244
MalI	GATC	3 cut(s)	29, 177, 203
MboI	GATC	3 cut(s)	27, 175, 201
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	268, 307
MnlI	CCTC	4 cut(s)	113, 201, 211, 250
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	57, 260
NdeII	GATC	3 cut(s)	27, 175, 201
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	6 cut(s)	13, 50, 86, 97, 133, 136
PmaCI	CACGTG	1 cut(s)	245
PmlI	CACGTG	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	245
PspCI	CACGTG	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	78
SatI	GCNGC	6 cut(s)	12, 49, 85, 96, 132, 135
Sau3AI	GATC	3 cut(s)	27, 175, 201
ScaI	AGTACT	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	5 cut(s)	89, 124, 193, 222, 247
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	268, 307
SsiI	CCGC	8 cut(s)	48, 95, 98, 131, 134, 139, 199, 254
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	268, 307
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	4 cut(s)	51, 98, 134, 137
TfiI	GAWTC	1 cut(s)	163
TseI	GCWGC	2 cut(s)	11, 84
Tth111I	GACNNNGTC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.