Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Reverse (-)

66667545 .. 66668139

Gene Structure 595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG452400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCCATGGTCATCACTAGCCTTGTGGCTAACTGTCTCGTCTTGCTTACTGTGTTCGATTTGTCATATGGAGAGCCGCCTTGGACTAGGGCTTTTCTTTCTTCCTCTGTTTCTGATTTCAGTTTGTTCTCGGCGCTTCGACGGGAGGATGGTGATATGGCGGATGGTTTGGTCTTCAGACTCTCTGAAGAACGTCCGCTATGGCTGGGTTCAAGTTTGGTGCGAAGATCAACGGGGGATCCACAGGTGGATCGGCTAGTTGGGGTTCTGCTGAAAAATTTTGAAGGGGGCCGATCAAGGACGACGGAGGTCGGAGGTTGGTCCCGCTGCGATTTGTTCGTGCCGCTGACGTGGGTGCGGCTGAACCATATCATATCATATCAATATTGTGACAGAATAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

6.56

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	77, 161, 197, 325, 344, 358
AclWI	GGATC	3 cut(s)	233, 246, 258
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	160, 207
AgsI	TTSAA	2 cut(s)	213, 284
AjiI	CACGTC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	233, 246, 258
AoxI	GGCC	2 cut(s)	3, 289
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	289, 321
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	2 cut(s)	143, 158
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	3 cut(s)	18, 87, 257
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	4 cut(s)	77, 328, 344, 359
BlsI	GCNGC	4 cut(s)	78, 329, 345, 360
Bme18I	GGWCC	1 cut(s)	321
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	289, 321
BmiI	GGNNCC	3 cut(s)	240, 290, 323
BoxI	GACNNNNGTC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	6, 80
BseDI	CCNNGG	2 cut(s)	6, 80
BseGI	GGATG	2 cut(s)	154, 169
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	5, 291
BslFI	GGGAC	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	5, 291
Bsp143I	GATC	4 cut(s)	227, 238, 250, 293
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	6 cut(s)	77, 161, 197, 325, 344, 358
BspANI	GGCC	2 cut(s)	5, 291
BspLI	GGNNCC	3 cut(s)	240, 290, 323
BspPI	GGATC	3 cut(s)	233, 246, 258
BssECI	CCNNGG	2 cut(s)	6, 80
BssMI	GATC	4 cut(s)	227, 238, 250, 293
BssT1I	CCWWGG	2 cut(s)	6, 80
Bst4CI	ACNGT	2 cut(s)	35, 52
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	154, 169
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	230, 241, 253, 296
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	227, 238, 250, 293
BstPAI	GACNNNNGTC	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	5, 291
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	154, 169
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	289, 321
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	9 cut(s)	5, 21, 29, 76, 92, 205, 256, 291, 361
CviKI_1	RGCY	9 cut(s)	5, 21, 29, 76, 92, 205, 256, 291, 361
DpnI	GATC	4 cut(s)	229, 240, 252, 295
DpnII	GATC	4 cut(s)	227, 238, 250, 293
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	6, 80
Eco47I	GGWCC	1 cut(s)	321
Eco57I	CTGAAG	2 cut(s)	160, 207
EcoT14I	CCWWGG	2 cut(s)	6, 80
ErhI	CCWWGG	2 cut(s)	6, 80
FaeI	CATG	1 cut(s)	10
FaiI	YATR	8 cut(s)	8, 67, 69, 158, 202, 369, 374, 379
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	332
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	77, 328, 344, 359
FokI	GGATG	2 cut(s)	161, 176
Fsp4HI	GCNGC	4 cut(s)	77, 328, 344, 359
FspBI	CTAG	3 cut(s)	18, 87, 257
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	4 cut(s)	77, 328, 344, 359
GsaI	CCCAGC	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	5, 291
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	180
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	4 cut(s)	115, 179, 187, 314
Hpy99I	CGWCG	2 cut(s)	144, 307
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	35, 52
HpyCH4IV	ACGT	2 cut(s)	193, 350
HpySE526I	ACGT	2 cut(s)	193, 350
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	227, 238, 250, 293
LpnPI	CCDG	2 cut(s)	191, 230
Lsp1109I	GCAGC	1 cut(s)	314
MaeI	CTAG	3 cut(s)	18, 87, 257
MaeII	ACGT	2 cut(s)	193, 350
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	4 cut(s)	229, 240, 252, 295
MboI	GATC	4 cut(s)	227, 238, 250, 293
MboII	GAAGA	4 cut(s)	93, 166, 200, 237
MflI	RGATCY	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	277
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	4 cut(s)	115, 139, 301, 308
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	327, 346
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	4 cut(s)	227, 238, 250, 293
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	3 cut(s)	240, 290, 323
NmeAIII	GCCGAG	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	78, 329, 345, 360
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PshAI	GACNNNNGTC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	240, 290, 323
PspPI	GGNCC	2 cut(s)	289, 321
PsuI	RGATCY	1 cut(s)	238
SatI	GCNGC	4 cut(s)	77, 328, 344, 359
Sau3AI	GATC	4 cut(s)	227, 238, 250, 293
Sau96I	GGNCC	2 cut(s)	289, 321
SchI	GAGTC	1 cut(s)	174
SetI	ASST	5 cut(s)	196, 249, 312, 319, 353
SinI	GGWCC	1 cut(s)	321
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	6 cut(s)	77, 161, 197, 325, 344, 358
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	3 cut(s)	18, 87, 257
StyI	CCWWGG	2 cut(s)	6, 80
TaaI	ACNGT	2 cut(s)	35, 52
TaiI	ACGT	2 cut(s)	196, 353
TaqI	TCGA	2 cut(s)	57, 139
TasI	AATT	1 cut(s)	277
TauI	GCSGC	3 cut(s)	79, 346, 361
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	3 cut(s)	18, 87, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.