Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Forward (+)

35394757 .. 35395329

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG197200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCCGGGCCATCACTAACCTTGTGGTTAACTATCTCAGCCTGCTTGCGGTGTTTGATTTATCATATGGAGAGTCACCTTGGTCTGGGGCTTTTCTTTCTTCCTCGGTCGCTGATTTGGGTTGCTTCCCGGCTCTTCAATTGGAGGATGGTGTTATGGTGGATGGTTTGGTCTTCGGACTATCCGAGGAGCATCCACTATGGATGGGTTCAAATTTGGGGCGAAGTTTAATGGTAGATCCATCGGTGCATGTTGGGGATTGGCCGGAAGATTTCGCTAGTTCTCAACGGGGGCTAACCAGGGAAGGCGGAGGTTGGGGGTTGAGATCTATACGGGTCGGTGACTTGGGTGAGGCTGGTCGTGGAGATCTGATCCTACTTGCTTCTGATAACGGTGAGGATGATGTCGCTCAGGGACACGGTGATGAAGGCTTCTCGACGGTGGTGCGTGCTCTTGGTGGAGGAGGACTTGCAGCGGCGGCGAGGGCTTACGGTGATGGTTGCCGGAAACTATTTGGAGGTGGTGTTGGGGTGCCCATAGCAGCTTCCAGGCATTGGGCTCTTTGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

19.76

Weight (kDa)

4.58

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	555
AciI	CCGC	4 cut(s)	50, 309, 476, 479
AclWI	GGATC	2 cut(s)	233, 367
AcoI	YGGCCR	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	214
AfiI	CCNNNNNNNGG	3 cut(s)	49, 86, 555
AgsI	TTSAA	2 cut(s)	140, 213
AjnI	CCWGG	2 cut(s)	299, 548
AluBI	AGCT	1 cut(s)	545
AluI	AGCT	1 cut(s)	545
Alw21I	GWGCWC	1 cut(s)	454
AlwI	GGATC	2 cut(s)	233, 367
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	4 cut(s)	3, 9, 263, 567
ApeKI	GCWGC	2 cut(s)	473, 542
ApoI	RAATTY	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	4, 9, 567
AsuC2I	CCSGG	3 cut(s)	7, 8, 131
AsuHPI	GGTGA	6 cut(s)	69, 353, 362, 407, 434, 506
AvaI	CYCGRG	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	485, 554
BccI	CCATC	6 cut(s)	20, 143, 158, 199, 250, 491
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	2 cut(s)	301, 550
BcnI	CCSGG	3 cut(s)	7, 8, 131
BfaI	CTAG	1 cut(s)	279
BglII	AGATCT	2 cut(s)	326, 367
BisI	GCNGC	4 cut(s)	474, 477, 480, 543
BlsI	GCNGC	4 cut(s)	475, 478, 481, 544
Bme1390I	CCNGG	5 cut(s)	7, 8, 131, 301, 550
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	4, 9, 567
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	5 cut(s)	7, 8, 131, 301, 550
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	3 cut(s)	7, 8, 131
BsaJI	CCNNGG	5 cut(s)	6, 80, 105, 186, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 86, 555
BseBI	CCWGG	2 cut(s)	301, 550
BseDI	CCNNGG	5 cut(s)	6, 80, 105, 186, 300
BseGI	GGATG	5 cut(s)	154, 169, 193, 210, 406
BseLI	CCNNNNNNNGG	3 cut(s)	49, 86, 555
BseMII	CTCAG	2 cut(s)	52, 425
BseRI	GAGGAG	2 cut(s)	203, 477
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	2 cut(s)	485, 554
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	5, 11, 265, 569
BshNI	GGYRCC	1 cut(s)	532
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	4 cut(s)	7, 131, 266, 505
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	3 cut(s)	49, 86, 555
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	4 cut(s)	5, 11, 265, 569
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	3 cut(s)	454, 537, 562
Bsp143I	GATC	4 cut(s)	238, 326, 367, 372
BspACI	CCGC	4 cut(s)	50, 309, 476, 479
BspANI	GGCC	4 cut(s)	5, 11, 265, 569
BspCNI	CTCAG	2 cut(s)	51, 424
BspLI	GGNNCC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	233, 367
BspQI	GCTCTTC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	532
BssECI	CCNNGG	5 cut(s)	6, 80, 105, 186, 300
BssMI	GATC	4 cut(s)	238, 326, 367, 372
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	301, 550
Bst4CI	ACNGT	4 cut(s)	395, 422, 442, 494
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	44, 48, 450
BstDEI	CTNAG	2 cut(s)	38, 411
BstF5I	GGATG	5 cut(s)	154, 169, 193, 210, 406
BstKTI	GATC	4 cut(s)	241, 329, 370, 375
BstMBI	GATC	4 cut(s)	238, 326, 367, 372
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 485, 566
BstNI	CCWGG	2 cut(s)	301, 550
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	5 cut(s)	5, 6, 129, 299, 548
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	485, 554
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	3 cut(s)	238, 326, 367
BstYI	RGATCY	3 cut(s)	238, 326, 367
BsuRI	GGCC	4 cut(s)	5, 11, 265, 569
BtsCI	GGATG	5 cut(s)	154, 169, 193, 210, 406
Cac8I	GCNNGC	3 cut(s)	44, 48, 450
Cfr13I	GGNCC	3 cut(s)	4, 9, 567
Cfr9I	CCCGGG	1 cut(s)	6
CviAII	CATG	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	38, 411
DpnI	GATC	4 cut(s)	240, 328, 369, 374
DpnII	GATC	4 cut(s)	238, 326, 367, 372
EaeI	YGGCCR	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	562
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	299, 548
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	1 cut(s)	254
FaiI	YATR	7 cut(s)	67, 69, 158, 202, 252, 332, 539
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	474, 477, 480, 543
FokI	GGATG	5 cut(s)	161, 176, 180, 217, 413
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	4 cut(s)	474, 477, 480, 543
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	4 cut(s)	474, 477, 480, 543
HaeIII	GGCC	4 cut(s)	5, 11, 265, 569
HapII	CCGG	4 cut(s)	7, 131, 266, 505
Hin1II	CATG	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	74
HpaI	GTTAAC	1 cut(s)	31
HpaII	CCGG	4 cut(s)	7, 131, 266, 505
HphI	GGTGA	6 cut(s)	69, 353, 362, 407, 434, 506
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	179, 187, 372, 388
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	442
HpyAV	CCTTC	2 cut(s)	299, 422
HpyCH4III	ACNGT	4 cut(s)	395, 422, 442, 494
HpyCH4V	TGCA	2 cut(s)	250, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 485, 566
HpyF3I	CTNAG	2 cut(s)	38, 411
Hsp92II	CATG	1 cut(s)	254
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	238, 326, 367, 372
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	485, 554
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	75, 341
MalI	GATC	4 cut(s)	240, 328, 369, 374
MboI	GATC	4 cut(s)	238, 326, 367, 372
MboII	GAAGA	4 cut(s)	93, 128, 166, 281
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	3 cut(s)	238, 326, 367
MhlI	GDGCHC	3 cut(s)	454, 537, 562
MluCI	AATT	2 cut(s)	140, 214
MlyI	GAGTC	1 cut(s)	83
MseI	TTAA	2 cut(s)	30, 230
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	4 cut(s)	7, 131, 266, 505
MspR9I	CCNGG	5 cut(s)	7, 8, 131, 301, 550
MunI	CAATTG	1 cut(s)	140
MvaI	CCWGG	2 cut(s)	301, 550
MwoI	GCNNNNNNNGC	3 cut(s)	479, 485, 566
NciI	CCSGG	3 cut(s)	7, 8, 131
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	4 cut(s)	238, 326, 367, 372
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	2 cut(s)	75, 341
NspI	RCATGY	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	4 cut(s)	475, 478, 481, 544
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	299, 548
PspGI	CCWGG	2 cut(s)	299, 548
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	3 cut(s)	4, 9, 567
PsuI	RGATCY	3 cut(s)	238, 326, 367
RseI	CAYNNNNRTG	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	30, 230
SatI	GCNGC	4 cut(s)	474, 477, 480, 543
Sau3AI	GATC	4 cut(s)	238, 326, 367, 372
Sau96I	GGNCC	3 cut(s)	4, 9, 567
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	5 cut(s)	7, 8, 131, 301, 550
SduI	GDGCHC	3 cut(s)	454, 537, 562
SetI	ASST	5 cut(s)	24, 82, 316, 523, 547
SfaNI	GCATC	1 cut(s)	202
SmaI	CCCGGG	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	423
SrfI	GCCCGGGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	140, 214
SsiI	CCGC	4 cut(s)	50, 309, 476, 479
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	5 cut(s)	5, 6, 129, 299, 548
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	4 cut(s)	395, 422, 442, 494
TaqI	TCGA	1 cut(s)	437
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	2 cut(s)	140, 214
TauI	GCSGC	2 cut(s)	479, 482
Tru1I	TTAA	2 cut(s)	30, 230
Tru9I	TTAA	2 cut(s)	30, 230
TseFI	GTSAC	2 cut(s)	75, 341
TseI	GCWGC	2 cut(s)	473, 542
Tsp45I	GTSAC	2 cut(s)	75, 341
TspDTI	ATGAA	1 cut(s)	441
TspMI	CCCGGG	1 cut(s)	6
Van91I	CCANNNNNTGG	1 cut(s)	555
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	1 cut(s)	254
XmaI	CCCGGG	1 cut(s)	6
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.