Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000361.1

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Reverse (-)

28690 .. 32761

Gene Structure 4072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000361.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggcccgggacatcactaaccttgtggttaactatctcagcctgcttgcggtgtttgatttatcatatggagagtcaccttggtctggggcttttctttcttcctcggtcgctgatttgggttgctttccggctcttcaattggaggatggtgttatggtggatggtttggtcttcggactctccgaggagcatctgctatggctgggttcgaatttagggcacagtttaatggtagatccatcggtgcatgttggggattggccggaagatttcgctagttctcaacaggggctaaccagggaaggcggaggtcgggggttgagatctattctggtcggtgacttgggtgaggctggtcgtggagatctgatcctacttgcttctgataacggttgggatgatgtcgctcagggacacggtggtgaaggcttctcgacggtggtgtgtgctcttggtggcgaaggaattgcagtggcggtgagggcttacggtgctggtggccggaaactatttggaggtggtgttggggtgcccatagcaacttccatgcattgggctctttgggccttaatctgggcgtcggagaaccccatgaggaaaatcaaggtccagaagctcatcctcaacatctctgtcggcgaaagcggcgatcgtctcaccaaggccgccaaggtcttggagcaactcagcttgaagactagccctactatcgaagaaatcaagaacatccttggtgccgagaagatggagctgctgggattgttaatgatgggtctgagcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

262

Amino Acids

27.6

Weight (kDa)

4.78

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	532, 737
AccB7I	CCANNNNNTGG	1 cut(s)	555
AciI	CCGC	5 cut(s)	50, 309, 479, 648, 669
AclWI	GGATC	2 cut(s)	233, 367
AcoI	YGGCCR	2 cut(s)	263, 502
AcsI	RAATTY	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	581
AfiI	CCNNNNNNNGG	4 cut(s)	49, 86, 555, 576
AgsI	TTSAA	2 cut(s)	140, 697
AjnI	CCWGG	1 cut(s)	299
AleI	CACNNNNGTG	1 cut(s)	423
AluBI	AGCT	3 cut(s)	619, 693, 754
AluI	AGCT	3 cut(s)	619, 693, 754
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	2 cut(s)	233, 367
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	5 cut(s)	3, 263, 502, 567, 666
ApeKI	GCWGC	1 cut(s)	754
ApoI	RAATTY	1 cut(s)	214
AspS9I	GGNCC	3 cut(s)	4, 567, 610
AsuC2I	CCSGG	2 cut(s)	7, 8
AsuHPI	GGTGA	6 cut(s)	69, 353, 362, 437, 493, 652
AsuII	TTCGAA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	610
BaeGI	GKGCMC	2 cut(s)	225, 537
BanI	GGYRCC	2 cut(s)	532, 737
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	2 cut(s)	166, 704
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	5 cut(s)	143, 158, 250, 742, 766
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	7, 8
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	2 cut(s)	279, 702
BglII	AGATCT	2 cut(s)	326, 367
BisI	GCNGC	3 cut(s)	649, 669, 755
BlsI	GCNGC	3 cut(s)	650, 670, 756
Bme1390I	CCNGG	3 cut(s)	7, 8, 301
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	4, 567, 610
BmiI	GGNNCC	2 cut(s)	534, 739
BmrFI	CCNGG	3 cut(s)	7, 8, 301
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	2 cut(s)	166, 704
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	7, 8
BsaHI	GRCGYC	1 cut(s)	581
BsaJI	CCNNGG	8 cut(s)	6, 80, 105, 186, 300, 663, 672, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 86, 555, 576
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	8 cut(s)	6, 80, 105, 186, 300, 663, 672, 733
BseGI	GGATG	5 cut(s)	154, 169, 406, 621, 729
BseLI	CCNNNNNNNGG	4 cut(s)	49, 86, 555, 576
BseMII	CTCAG	4 cut(s)	52, 425, 703, 770
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	2 cut(s)	225, 537
BseXI	GCAGC	1 cut(s)	741
BseYI	CCCAGC	2 cut(s)	205, 757
Bsh1285I	CGRYCG	2 cut(s)	111, 655
BshFI	GGCC	5 cut(s)	5, 265, 504, 569, 668
BshNI	GGYRCC	2 cut(s)	532, 737
BsiEI	CGRYCG	2 cut(s)	111, 655
BsiHKAI	GWGCWC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	6
BsiSI	CCGG	4 cut(s)	7, 131, 266, 505
BslFI	GGGAC	2 cut(s)	23, 429
BslI	CCNNNNNNNGG	4 cut(s)	49, 86, 555, 576
BsmAI	GTCTC	1 cut(s)	662
BsmBI	CGTCTC	1 cut(s)	662
BsmFI	GGGAC	2 cut(s)	23, 429
BsnI	GGCC	5 cut(s)	5, 265, 504, 569, 668
BsoBI	CYCGRG	1 cut(s)	6
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	4 cut(s)	225, 454, 537, 562
Bsp143I	GATC	5 cut(s)	238, 326, 367, 372, 652
BspACI	CCGC	5 cut(s)	50, 309, 479, 648, 669
BspANI	GGCC	5 cut(s)	5, 265, 504, 569, 668
BspCNI	CTCAG	4 cut(s)	51, 424, 702, 771
BspLI	GGNNCC	2 cut(s)	534, 739
BspPI	GGATC	2 cut(s)	233, 367
BspQI	GCTCTTC	1 cut(s)	141
BspT104I	TTCGAA	1 cut(s)	212
BspT107I	GGYRCC	2 cut(s)	532, 737
BssECI	CCNNGG	8 cut(s)	6, 80, 105, 186, 300, 663, 672, 733
BssMI	GATC	5 cut(s)	238, 326, 367, 372, 652
BssNI	GRCGYC	1 cut(s)	581
BssT1I	CCWWGG	4 cut(s)	80, 663, 672, 733
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	5 cut(s)	227, 395, 422, 442, 494
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	44, 48
BstDEI	CTNAG	4 cut(s)	38, 411, 689, 779
BstF5I	GGATG	5 cut(s)	154, 169, 406, 621, 729
BstKTI	GATC	5 cut(s)	241, 329, 370, 375, 655
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	5 cut(s)	238, 326, 367, 372, 652
BstMCI	CGRYCG	2 cut(s)	111, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	485, 494, 566, 648
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	3 cut(s)	5, 6, 299
BstSLI	GKGCMC	2 cut(s)	225, 537
BstV1I	GCAGC	1 cut(s)	741
BstV2I	GAAGAC	2 cut(s)	166, 704
BstX2I	RGATCY	3 cut(s)	238, 326, 367
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	3 cut(s)	238, 326, 367
BsuRI	GGCC	5 cut(s)	5, 265, 504, 569, 668
BtsCI	GGATG	5 cut(s)	154, 169, 406, 621, 729
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	44, 48
Cfr13I	GGNCC	3 cut(s)	4, 567, 610
Cfr9I	CCCGGG	1 cut(s)	6
CseI	GACGC	1 cut(s)	570
CviAII	CATG	3 cut(s)	251, 550, 595
DdeI	CTNAG	4 cut(s)	38, 411, 689, 779
DpnI	GATC	5 cut(s)	240, 328, 369, 374, 654
DpnII	GATC	5 cut(s)	238, 326, 367, 372, 652
EaeI	YGGCCR	2 cut(s)	263, 502
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	324
Eco130I	CCWWGG	4 cut(s)	80, 663, 672, 733
Eco24I	GRGCYC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	610
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	299
EcoT14I	CCWWGG	4 cut(s)	80, 663, 672, 733
EcoT22I	ATGCAT	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	4 cut(s)	80, 663, 672, 733
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	3 cut(s)	254, 553, 598
FaiI	YATR	8 cut(s)	67, 69, 158, 202, 252, 539, 551, 596
FaqI	GGGAC	2 cut(s)	23, 429
FatI	CATG	3 cut(s)	250, 549, 594
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	649, 669, 755
FokI	GGATG	5 cut(s)	161, 176, 413, 608, 716
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	3 cut(s)	649, 669, 755
FspBI	CTAG	2 cut(s)	279, 702
GluI	GCNGC	3 cut(s)	649, 669, 755
GsaI	CCCAGC	2 cut(s)	209, 761
HaeIII	GGCC	5 cut(s)	5, 265, 504, 569, 668
HapII	CCGG	4 cut(s)	7, 131, 266, 505
HgaI	GACGC	1 cut(s)	570
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	3 cut(s)	254, 553, 598
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	2 cut(s)	74, 180
HpaI	GTTAAC	1 cut(s)	31
HpaII	CCGG	4 cut(s)	7, 131, 266, 505
HphI	GGTGA	6 cut(s)	69, 353, 362, 437, 493, 652
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	7 cut(s)	179, 187, 372, 388, 586, 780, 788
Hpy188III	TCNNGA	3 cut(s)	436, 613, 724
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	2 cut(s)	442, 586
HpyAV	CCTTC	3 cut(s)	299, 422, 458
HpyCH4III	ACNGT	5 cut(s)	227, 395, 422, 442, 494
HpyCH4V	TGCA	3 cut(s)	250, 473, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	485, 494, 566, 648
HpyF3I	CTNAG	4 cut(s)	38, 411, 689, 779
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	3 cut(s)	254, 553, 598
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	238, 326, 367, 372, 652
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	3 cut(s)	190, 682, 751
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	279, 702
MaeIII	GTNAC	2 cut(s)	75, 341
MalI	GATC	5 cut(s)	240, 328, 369, 374, 654
MboI	GATC	5 cut(s)	238, 326, 367, 372, 652
MboII	GAAGA	7 cut(s)	93, 128, 166, 281, 709, 728, 757
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	3 cut(s)	238, 326, 367
MhlI	GDGCHC	4 cut(s)	225, 454, 537, 562
MluCI	AATT	3 cut(s)	140, 214, 468
MlyI	GAGTC	2 cut(s)	83, 174
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	9 cut(s)	115, 139, 181, 305, 346, 477, 512, 591, 635
Mph1103I	ATGCAT	1 cut(s)	555
MseI	TTAA	4 cut(s)	30, 230, 572, 767
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	4 cut(s)	7, 131, 266, 505
MspR9I	CCNGG	3 cut(s)	7, 8, 301
MunI	CAATTG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	485, 494, 566, 648
NciI	CCSGG	2 cut(s)	7, 8
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	5 cut(s)	238, 326, 367, 372, 652
NlaIII	CATG	3 cut(s)	254, 553, 598
NlaIV	GGNNCC	2 cut(s)	534, 739
NmeAIII	GCCGAG	1 cut(s)	766
NmuCI	GTSAC	2 cut(s)	75, 341
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	3 cut(s)	650, 670, 756
Ple19I	CGATCG	1 cut(s)	655
PleI	GAGTC	2 cut(s)	82, 174
PpsI	GAGTC	2 cut(s)	82, 174
Psp6I	CCWGG	1 cut(s)	299
PspFI	CCCAGC	2 cut(s)	205, 757
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	534, 739
PspPI	GGNCC	3 cut(s)	4, 567, 610
PsuI	RGATCY	3 cut(s)	238, 326, 367
PvuI	CGATCG	1 cut(s)	655
RseI	CAYNNNNRTG	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	30, 230, 572, 767
SatI	GCNGC	3 cut(s)	649, 669, 755
Sau3AI	GATC	5 cut(s)	238, 326, 367, 372, 652
Sau96I	GGNCC	3 cut(s)	4, 567, 610
SchI	GAGTC	2 cut(s)	83, 174
ScrFI	CCNGG	3 cut(s)	7, 8, 301
SduI	GDGCHC	4 cut(s)	225, 454, 537, 562
SetI	ASST	9 cut(s)	24, 82, 316, 523, 612, 621, 678, 695, 756
SfaNI	GCATC	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	1 cut(s)	610
SmaI	CCCGGG	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	3 cut(s)	140, 214, 468
SsiI	CCGC	5 cut(s)	50, 309, 479, 648, 669
SspMI	CTAG	2 cut(s)	279, 702
StyD4I	CCNGG	3 cut(s)	5, 6, 299
StyI	CCWWGG	4 cut(s)	80, 663, 672, 733
TaaI	ACNGT	5 cut(s)	227, 395, 422, 442, 494
TaqI	TCGA	3 cut(s)	212, 437, 714
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	3 cut(s)	140, 214, 468
TauI	GCSGC	2 cut(s)	651, 671
Tru1I	TTAA	4 cut(s)	30, 230, 572, 767
Tru9I	TTAA	4 cut(s)	30, 230, 572, 767
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	2 cut(s)	75, 341
TseI	GCWGC	1 cut(s)	754
Tsp45I	GTSAC	2 cut(s)	75, 341
TspMI	CCCGGG	1 cut(s)	6
TspRI	CASTG	1 cut(s)	480
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	214
XceI	RCATGY	1 cut(s)	254
XmaI	CCCGGG	1 cut(s)	6
XspI	CTAG	2 cut(s)	279, 702
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.