Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Forward (+)

13842691 .. 13842939

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCCATTGTCATCACTAGTCTTGTGGCTAATTGTGTCGTCATGCTTGTTGTGTTTGGTTTAGGTTATGGAGAGCCGCTTTGGTTTAGGGCTTTTCTTTCCTCCTCTGCTGTCAATGTAGTCTCGACGTCTCGACTTGAGGAGGGTGATAGGGTGGGCGGCTTGTTTTTCAGACTCTCCGAAGAGCGTCTGCTATGGCTGGATTTGACCTTGGGACGTAGTTCAATGGAGGATCCAACCGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

9.0

Weight (kDa)

4.65

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	131
AciI	CCGC	2 cut(s)	77, 159
AclWI	GGATC	2 cut(s)	227, 240
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	225
AhlI	ACTAGT	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	127, 135
AlwI	GGATC	2 cut(s)	227, 240
AoxI	GGCC	1 cut(s)	3
AsuHPI	GGTGA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	127, 135
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	1 cut(s)	18
BisI	GCNGC	2 cut(s)	77, 160
BlsI	GCNGC	2 cut(s)	78, 161
BmiI	GGNNCC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	94, 155
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	127, 135
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	2 cut(s)	77, 159
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	227, 240
BspQI	GCTCTTC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	2 cut(s)	127, 135
BstMBI	GATC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	5
CseI	GACGC	1 cut(s)	176
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	6 cut(s)	5, 29, 76, 92, 162, 199
CviKI_1	RGCY	6 cut(s)	5, 29, 76, 92, 162, 199
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 69, 196
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	77, 160
Fsp4HI	GCNGC	2 cut(s)	77, 160
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	77, 160
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	174
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	173, 181
Hpy188III	TCNNGA	2 cut(s)	124, 132
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	128, 217
HpySE526I	ACGT	2 cut(s)	128, 217
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	177
LpnPI	CCDG	1 cut(s)	185
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	2 cut(s)	128, 217
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	31, 244
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	112, 115, 133, 136, 223
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	78, 161
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	2 cut(s)	77, 160
Sau3AI	GATC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	168
SetI	ASST	4 cut(s)	67, 131, 212, 220
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	2 cut(s)	31, 244
SsiI	CCGC	2 cut(s)	77, 159
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	131, 220
TaqI	TCGA	2 cut(s)	125, 133
TasI	AATT	2 cut(s)	31, 244
TauI	GCSGC	2 cut(s)	79, 162
XspI	CTAG	1 cut(s)	18
ZraI	GACGTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.