RLG00000007505

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004258
Physical Location & Seq
Forward (+)
17661506 .. 17663792
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007505

Sequence Viewer

Length: 987 bp
ATGGTCATCACTAGTGTTGTGGCCAATTGTGTCATCCTGTTTGCTATGTTCTGTTTGGTTTATGGAGAGCTGCCTTGGTCTAAGGCTTTTCCTTCCTCCTCCATCGTCGATTTGGTTTGTTTCCAGGAGTGTCGACTTGGGGAGAGTGATATGGTGGATGGTTTGTTGTTCAGACCCTCCAAAGAGCGATTGCTATGGCTGGGTTTGACTTTGGGGCGAAGCTCAATGGAGGATCCATCCAGGAATTGGCTAGTTGGGGTTTTGCCGAAGGAGTTCGTTGGCTCTCGAAGGGAGTCAATCAAAGACGGCGGAGGTCTAAGGTTGAATCTGCTGCGATCAAGCTGGACAAATAACGGGGGTGAGACTGGTTGTGGAAATCTGACCAGATTTGCTTCTGCTGGCAGTTGGGATGGAGTCTCACGGGGACAGGATGGTGGCGGCTTCTCGGTGGGGGTGCGAGAGTTCAGTGGCGAAGACCTTGCAGCGACGGAGCTGGTTCATAGTTTCGGTGGCCGGAATCTATTGGGTGGAGGTGTTGGGGTACCCATAACAGTCTCCATGCTTTGGGCCTCCCTCTGGGTTATGGGAAGTTGGGCTGTTATTTGGGTACCAAAGATGTTGGACCTGAGCTGGAAGTTTGTTCATGGGTGGGGCTGTTTGTTGGGTTCCCTGTGGATCGGATACTGGGCTGCATGGGTGTCTTGCTGGGCTGAGGAGGTTTTGGTTTCCCGCAGACAGATTATTCAGTGGTGCTGCTATGGTGGTTTGCAAGGTGGTCTGACTATGTATGGATGTCAACGCATTATTGAAGTGCCGAATCTATTGACTGCACAAGAGGTGGTGCAACACTGTCATAGTAGGCTTGTGTTTCTAGCATCGTCGACTGGTGGCATTGAAGGGAAGGAGGGAGGGGGTGCAACTCTGCTGTTTCAGTCATTAGTAGAGGCTGTAGATGCATACGGATGTGGGCTAGGGGTGCAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

35.55

Weight (kDa)

5.49

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 541, 607
AccB1I GGYRCC 2 cut(s) 541, 607
AccB7I CCANNNNNTGG 2 cut(s) 246, 564
AccI GTMKAC 2 cut(s) 133, 881
AciI CCGC 3 cut(s) 309, 438, 730
AclWI GGATC 3 cut(s) 227, 240, 683
AcoI YGGCCR 2 cut(s) 21, 511
AfaI GTAC 2 cut(s) 543, 609
AfiI CCNNNNNNNGG 3 cut(s) 246, 564, 576
AgsI TTSAA 3 cut(s) 325, 809, 896
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 123, 239
AluBI AGCT 5 cut(s) 70, 222, 342, 493, 630
AluI AGCT 5 cut(s) 70, 222, 342, 493, 630
Alw26I GTCTC 3 cut(s) 356, 421, 559
AlwI GGATC 3 cut(s) 227, 240, 683
AoxI GGCC 3 cut(s) 21, 511, 567
ApeKI GCWGC 5 cut(s) 70, 331, 482, 689, 753
Asp700I GAANNNNTTC 1 cut(s) 272
Asp718I GGTACC 2 cut(s) 541, 607
AspS9I GGNCC 2 cut(s) 567, 622
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 622
BalI TGGCCA 1 cut(s) 23
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 2 cut(s) 541, 607
BbsI GAAGAC 1 cut(s) 480
BbvCI CCTCAGC 1 cut(s) 711
BbvI GCAGC 5 cut(s) 57, 318, 494, 676, 740
BccI CCATC 5 cut(s) 110, 152, 244, 404, 425
BceAI ACGGC 1 cut(s) 322
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BciT130I CCWGG 2 cut(s) 125, 241
BciVI GTATCC 1 cut(s) 674
BcoDI GTCTC 3 cut(s) 356, 421, 559
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 4 cut(s) 12, 251, 872, 971
BfmI CTRYAG 1 cut(s) 948
BfuI GTATCC 1 cut(s) 674
BisI GCNGC 6 cut(s) 71, 332, 439, 483, 690, 754
BlsI GCNGC 6 cut(s) 72, 333, 440, 484, 691, 755
Bme1390I CCNGG 2 cut(s) 125, 241
Bme18I GGWCC 1 cut(s) 622
BmgT120I GGNCC 2 cut(s) 567, 622
BmiI GGNNCC 4 cut(s) 234, 543, 609, 667
BmrFI CCNGG 2 cut(s) 125, 241
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 2 cut(s) 884, 943
BmuI ACTGGG 1 cut(s) 694
BpiI GAAGAC 1 cut(s) 480
Bpu10I CCTNAGC 2 cut(s) 626, 711
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 564, 576
Bse1I ACTGG 3 cut(s) 370, 689, 889
BseBI CCWGG 2 cut(s) 125, 241
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 7 cut(s) 33, 163, 236, 415, 436, 797, 968
BseLI CCNNNNNNNGG 3 cut(s) 246, 564, 576
BseMII CTCAG 2 cut(s) 617, 702
BseNI ACTGG 3 cut(s) 370, 689, 889
BseRI GAGGAG 2 cut(s) 88, 728
BseXI GCAGC 5 cut(s) 57, 318, 494, 676, 740
BseYI CCCAGC 2 cut(s) 199, 705
BsgI GTGCAG 1 cut(s) 813
BshFI GGCC 3 cut(s) 23, 513, 569
BshNI GGYRCC 2 cut(s) 541, 607
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 3 cut(s) 246, 564, 576
BsmAI GTCTC 3 cut(s) 356, 421, 559
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 3 cut(s) 23, 513, 569
Bsp143I GATC 3 cut(s) 232, 335, 675
BspACI CCGC 3 cut(s) 309, 438, 730
BspANI GGCC 3 cut(s) 23, 513, 569
BspCNI CTCAG 2 cut(s) 618, 703
BspLI GGNNCC 4 cut(s) 234, 543, 609, 667
BspPI GGATC 3 cut(s) 227, 240, 683
BspT107I GGYRCC 2 cut(s) 541, 607
BsrI ACTGG 3 cut(s) 370, 689, 889
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 3 cut(s) 232, 335, 675
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 125, 241
Bst4CI ACNGT 2 cut(s) 553, 851
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 4 cut(s) 81, 317, 626, 711
BstF5I GGATG 7 cut(s) 33, 163, 236, 415, 436, 797, 968
BstKTI GATC 3 cut(s) 235, 338, 678
BstMAI GTCTC 3 cut(s) 356, 421, 559
BstMBI GATC 3 cut(s) 232, 335, 675
BstMWI GCNNNNNNNGC 2 cut(s) 953, 976
BstNI CCWGG 2 cut(s) 125, 241
BstSCI CCNGG 2 cut(s) 123, 239
BstSFI CTRYAG 1 cut(s) 948
BstV1I GCAGC 5 cut(s) 57, 318, 494, 676, 740
BstV2I GAAGAC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 3 cut(s) 23, 513, 569
BtsCI GGATG 7 cut(s) 33, 163, 236, 415, 436, 797, 968
BtsIMutI CAGTG 3 cut(s) 472, 752, 847
Cac8I GCNNGC 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 567, 622
Csp6I GTAC 2 cut(s) 542, 608
CviAII CATG 3 cut(s) 559, 644, 693
CviQI GTAC 2 cut(s) 542, 608
DdeI CTNAG 4 cut(s) 81, 317, 626, 711
DpnI GATC 3 cut(s) 234, 337, 677
DpnII GATC 3 cut(s) 232, 335, 675
EaeI YGGCCR 2 cut(s) 21, 511
EciI GGCGGA 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 622
EcoRII CCWGG 2 cut(s) 123, 239
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 958
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 562, 647, 696
FaqI GGGAC 1 cut(s) 438
FatI CATG 3 cut(s) 558, 643, 692
FauI CCCGC 1 cut(s) 737
FblI GTMKAC 2 cut(s) 133, 881
Fnu4HI GCNGC 6 cut(s) 71, 332, 439, 483, 690, 754
FokI GGATG 7 cut(s) 20, 170, 223, 422, 443, 804, 975
Fsp4HI GCNGC 6 cut(s) 71, 332, 439, 483, 690, 754
FspBI CTAG 4 cut(s) 12, 251, 872, 971
GluI GCNGC 6 cut(s) 71, 332, 439, 483, 690, 754
GsaI CCCAGC 2 cut(s) 203, 709
HaeIII GGCC 3 cut(s) 23, 513, 569
HapII CCGG 1 cut(s) 514
Hin1II CATG 3 cut(s) 562, 647, 696
HincII GTYRAC 3 cut(s) 134, 797, 882
HindII GTYRAC 3 cut(s) 134, 797, 882
HinfI GANTC 5 cut(s) 293, 325, 414, 517, 817
HpaII CCGG 1 cut(s) 514
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 3 cut(s) 134, 797, 882
Hpy188I TCNGA 4 cut(s) 173, 381, 680, 780
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 3 cut(s) 134, 797, 882
Hpy99I CGWCG 3 cut(s) 110, 490, 883
HpyAV CCTTC 5 cut(s) 102, 262, 282, 890, 895
HpyCH4III ACNGT 2 cut(s) 553, 851
HpyCH4V TGCA 8 cut(s) 482, 692, 769, 830, 844, 917, 956, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 953, 976
HpyF3I CTNAG 4 cut(s) 81, 317, 626, 711
Hsp92II CATG 3 cut(s) 562, 647, 696
KpnI GGTACC 2 cut(s) 545, 611
Kzo9I GATC 3 cut(s) 232, 335, 675
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 5 cut(s) 57, 318, 494, 676, 740
LweI GCATC 2 cut(s) 884, 943
MaeI CTAG 4 cut(s) 12, 251, 872, 971
MalI GATC 3 cut(s) 234, 337, 677
MboI GATC 3 cut(s) 232, 335, 675
MboII GAAGA 1 cut(s) 485
MfeI CAATTG 1 cut(s) 25
MflI RGATCY 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 2 cut(s) 25, 244
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 2 cut(s) 302, 423
MmeI TCCRAC 1 cut(s) 600
Mox20I TGGCCA 1 cut(s) 23
Mph1103I ATGCAT 1 cut(s) 958
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 961
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 2 cut(s) 125, 241
MunI CAATTG 1 cut(s) 25
MvaI CCWGG 2 cut(s) 125, 241
MwoI GCNNNNNNNGC 2 cut(s) 953, 976
NdeII GATC 3 cut(s) 232, 335, 675
NlaIII CATG 3 cut(s) 562, 647, 696
NlaIV GGNNCC 4 cut(s) 234, 543, 609, 667
NsiI ATGCAT 1 cut(s) 958
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 3 cut(s) 325, 517, 817
PflMI CCANNNNNTGG 2 cut(s) 246, 564
PfoI TCCNGGA 2 cut(s) 123, 239
PkrI GCNGC 6 cut(s) 72, 333, 440, 484, 691, 755
PleI GAGTC 2 cut(s) 301, 422
PpsI GAGTC 2 cut(s) 301, 422
Psp6I CCWGG 2 cut(s) 123, 239
PspFI CCCAGC 2 cut(s) 199, 705
PspGI CCWGG 2 cut(s) 123, 239
PspN4I GGNNCC 4 cut(s) 234, 543, 609, 667
PspPI GGNCC 2 cut(s) 567, 622
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 543, 609
RsaNI GTAC 2 cut(s) 542, 608
RseI CAYNNNNRTG 1 cut(s) 961
SalI GTCGAC 2 cut(s) 132, 880
SatI GCNGC 6 cut(s) 71, 332, 439, 483, 690, 754
Sau3AI GATC 3 cut(s) 232, 335, 675
Sau96I GGNCC 2 cut(s) 567, 622
SchI GAGTC 2 cut(s) 302, 423
ScrFI CCNGG 2 cut(s) 125, 241
SfaNI GCATC 2 cut(s) 884, 943
SfcI CTRYAG 1 cut(s) 948
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 961
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 25, 244
SsiI CCGC 3 cut(s) 309, 438, 730
SspMI CTAG 4 cut(s) 12, 251, 872, 971
StyD4I CCNGG 2 cut(s) 123, 239
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 2 cut(s) 553, 851
TaqI TCGA 4 cut(s) 108, 133, 286, 881
TasI AATT 2 cut(s) 25, 244
TauI GCSGC 1 cut(s) 441
TfiI GAWTC 3 cut(s) 325, 517, 817
TscAI CASTG 3 cut(s) 472, 752, 854
TseI GCWGC 5 cut(s) 70, 331, 482, 689, 753
TspDTI ATGAA 2 cut(s) 488, 632
TspGWI ACGGA 2 cut(s) 503, 975
TspRI CASTG 3 cut(s) 472, 752, 854
Van91I CCANNNNNTGG 2 cut(s) 246, 564
VpaK11BI GGWCC 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 243
XmiI GTMKAC 2 cut(s) 133, 881
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 4 cut(s) 12, 251, 872, 971
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.