Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004258

Physical Location & Seq

Genomic Coordinates Reverse (-)

65468270 .. 65470934

Gene Structure 2665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGTCATCACTAGTGTTGTGGCCAATTGTGTCGTCCTATTTGCTGTGTTTGGTTTGGTTTATGGAGAGCAACCTTGGTCTAGGGTTTTTCCTTCCTCCTCCGTCGCCGATTTGGTTTTTTTCCTAGAGTATCGACTTGGGGAGAGTGATATGGTGGATGGTTTGTTGTTCGGACCCTCCGAAGAGCGATTACTATGGCTGGGTTTGACTTTGGGGCGAAGCTTAATGGAGGATCCATCCAGGAATTGGCGAGTTGGGGTATTGCCAAAGGAGTTTGTTGGCTCTCGAAGGGAGTCGATCAAAGACGGTGGAGGTCTGGGGTTGATTCTACTACGATCTAGCTGGGCCGATAACAAGGGCGCGACTGGTTGTGGAAATCTGACCCGATTTGCTTCTGCTGGTGGTTGGGACGGAGTCTCGCGGGAACAGGATGGTGGCAGCTTCTCGGCGTGGGTACGAGAGTTCGGTGGCGAAGGCCTTGCAGCAACAGAGTTGGCTCATGGTTTCGGTGGCCGGAATCTATTCGGTGGAGGTTTCTCTATGGCTCCTCGATACTCTGGTCTTGGGGTGTTGCCTTCTACGGTTGCAGTTGGTGGTGCACTGGTGCTGGTGATTGCGGAGATACGGTGGATGGCGGCAGTGTGCTGGCGTTGGGTTTTGCTCCCAGTAGTGCAGCCCGTCGAGGTGGAGGCTGCCGGCATGCTTCAGGCTGAACTCTATGGAGCTTGGGCCCGTACCAGCTGGGCTAGAGGGCTTCTCATTGTTGGGTCTTGGCCTCCATATGGATTGGGCTCGTTTGGGCTCACAAATTATTTCGGGCTTCAATTTTTATTTTTAAGTTCTCATTCTTTTTCACGAAAGAATAATGACCCTATCTTTTGTCTTTTGAGTGAGCAAGATCCATACGAAATCGTAGATATTTTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

33.52

Weight (kDa)

5.1

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004258)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0035511 RchiOBHm_Chr6g0307831
rosa_laevigata	RLG00000004051 RLG00000005920 RLG00000007149 RLG00000007505 RLG00000009057 RLG00000018692 RLG00000019983 RLG00000020477 RLG00000033649 RLG00000034124 RLG00000035107
rosa_multiflora	Rmu_ssc0000361.1_g000004
rosa_roxburghii	Rroxscaffold_3G00259640 Rroxscaffold_5G00352810
rosa_rugosa	Rorug01G0371800
rosa_samantha	Rh2AG452400 Rh2BG001100 Rh3CG298200 Rh4BG362700 Rh4CG376900 Rh5BG175700 Rh5BG245800 Rh6AG197200 Rh6AG470100 Rh6BG429500 Rh6CG081300 Rh6DG076700 Rh6DG517600 Rh7BG460800 Rh7CG163300 Rh7DG158600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	2 cut(s)	362, 421
AciI	CCGC	3 cut(s)	421, 617, 635
AclWI	GGATC	3 cut(s)	227, 240, 893
AcoI	YGGCCR	2 cut(s)	21, 511
AcuI	CTGAAG	1 cut(s)	689
AfaI	GTAC	2 cut(s)	456, 736
AfiI	CCNNNNNNNGG	2 cut(s)	246, 782
AgsI	TTSAA	1 cut(s)	824
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	5 cut(s)	222, 342, 441, 725, 741
AluI	AGCT	5 cut(s)	222, 342, 441, 725, 741
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	597
AlwI	GGATC	3 cut(s)	227, 240, 893
AoxI	GGCC	6 cut(s)	21, 345, 475, 511, 729, 773
ApaI	GGGCCC	1 cut(s)	733
ApaLI	GTGCAC	1 cut(s)	597
ApeKI	GCWGC	4 cut(s)	438, 482, 673, 692
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	4 cut(s)	173, 345, 729, 730
AsuHPI	GGTGA	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	2 cut(s)	601, 733
BaeI	ACNNNNGTAYC	4 cut(s)	446, 479, 544, 577
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	232
BanII	GRGCYC	3 cut(s)	733, 794, 804
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	4 cut(s)	450, 494, 679, 685
BccI	CCATC	4 cut(s)	152, 244, 425, 625
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciT130I	CCWGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	421
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	5 cut(s)	12, 81, 125, 339, 747
BisI	GCNGC	5 cut(s)	439, 483, 636, 674, 693
BlsI	GCNGC	5 cut(s)	440, 484, 637, 675, 694
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	4 cut(s)	173, 345, 729, 730
BmiI	GGNNCC	4 cut(s)	175, 234, 546, 731
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	659
BmuI	ACTGGG	1 cut(s)	659
BplI	GAGNNNNNCTC	2 cut(s)	741, 773
BsaJI	CCNNGG	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 782
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	3 cut(s)	370, 606, 665
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	4 cut(s)	163, 236, 436, 636
BseLI	CCNNNNNNNGG	2 cut(s)	246, 782
BseNI	ACTGG	3 cut(s)	370, 606, 665
BseRI	GAGGAG	2 cut(s)	88, 537
BseSI	GKGCMC	2 cut(s)	601, 733
BseXI	GCAGC	4 cut(s)	450, 494, 679, 685
BseYI	CCCAGC	3 cut(s)	199, 342, 741
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	2 cut(s)	362, 421
BshFI	GGCC	6 cut(s)	23, 347, 477, 513, 731, 775
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	2 cut(s)	514, 696
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	246, 782
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	6 cut(s)	23, 347, 477, 513, 731, 775
Bsp120I	GGGCCC	1 cut(s)	729
Bsp1286I	GDGCHC	4 cut(s)	601, 733, 794, 804
Bsp143I	GATC	4 cut(s)	232, 297, 335, 898
BspACI	CCGC	3 cut(s)	421, 617, 635
BspANI	GGCC	6 cut(s)	23, 347, 477, 513, 731, 775
BspFNI	CGCG	2 cut(s)	362, 421
BspLI	GGNNCC	4 cut(s)	175, 234, 546, 731
BspPI	GGATC	3 cut(s)	227, 240, 893
BspQI	GCTCTTC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	3 cut(s)	370, 606, 665
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	4 cut(s)	232, 297, 335, 898
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	308, 583, 627
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	647, 697, 701
BstF5I	GGATG	4 cut(s)	163, 236, 436, 636
BstFNI	CGCG	2 cut(s)	362, 421
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	4 cut(s)	235, 300, 338, 901
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	4 cut(s)	232, 297, 335, 898
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	1 cut(s)	239
BstSLI	GKGCMC	2 cut(s)	601, 733
BstUI	CGCG	2 cut(s)	362, 421
BstV1I	GCAGC	4 cut(s)	450, 494, 679, 685
BstX2I	RGATCY	2 cut(s)	232, 898
BstYI	RGATCY	2 cut(s)	232, 898
BsuRI	GGCC	6 cut(s)	23, 347, 477, 513, 731, 775
BtsCI	GGATG	4 cut(s)	163, 236, 436, 636
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	599, 645
Cac8I	GCNNGC	3 cut(s)	647, 697, 701
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	695
Cfr13I	GGNCC	4 cut(s)	173, 345, 729, 730
Csp6I	GTAC	2 cut(s)	455, 735
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	2 cut(s)	500, 700
CviQI	GTAC	2 cut(s)	455, 735
DpnI	GATC	4 cut(s)	234, 299, 337, 900
DpnII	GATC	4 cut(s)	232, 297, 335, 898
EaeI	YGGCCR	2 cut(s)	21, 511
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	477
Eco24I	GRGCYC	3 cut(s)	733, 794, 804
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	74
EcoT38I	GRGCYC	3 cut(s)	733, 794, 804
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	503, 703
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	499, 699
FauI	CCCGC	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	5 cut(s)	439, 483, 636, 674, 693
FokI	GGATG	4 cut(s)	170, 223, 443, 643
FriOI	GRGCYC	3 cut(s)	733, 794, 804
Fsp4HI	GCNGC	5 cut(s)	439, 483, 636, 674, 693
FspBI	CTAG	5 cut(s)	12, 81, 125, 339, 747
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	5 cut(s)	439, 483, 636, 674, 693
GsaI	CCCAGC	3 cut(s)	203, 346, 745
HaeIII	GGCC	6 cut(s)	23, 347, 477, 513, 731, 775
HapII	CCGG	2 cut(s)	514, 696
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	503, 703
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	4 cut(s)	293, 325, 414, 517
HpaII	CCGG	2 cut(s)	514, 696
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	599
Hpy188I	TCNGA	3 cut(s)	173, 181, 381
Hpy188III	TCNNGA	2 cut(s)	285, 855
Hpy8I	GTNNAC	1 cut(s)	599
Hpy99I	CGWCG	2 cut(s)	107, 683
HpyAV	CCTTC	4 cut(s)	102, 282, 467, 585
HpyCH4III	ACNGT	3 cut(s)	308, 583, 627
HpyCH4V	TGCA	4 cut(s)	482, 587, 599, 673
Hsp92II	CATG	2 cut(s)	503, 703
HspAI	GCGC	1 cut(s)	360
KroI	GCCGGC	1 cut(s)	695
KroNI	GCCGGC	1 cut(s)	697
Kzo9I	GATC	4 cut(s)	232, 297, 335, 898
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	550, 666, 722
Lsp1109I	GCAGC	4 cut(s)	450, 494, 679, 685
MaeI	CTAG	5 cut(s)	12, 81, 125, 339, 747
MalI	GATC	4 cut(s)	234, 299, 337, 900
MboI	GATC	4 cut(s)	232, 297, 335, 898
MboII	GAAGA	1 cut(s)	194
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	2 cut(s)	232, 898
MhlI	GDGCHC	4 cut(s)	601, 733, 794, 804
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	4 cut(s)	25, 244, 808, 824
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	302, 423
Mox20I	TGGCCA	1 cut(s)	23
MroNI	GCCGGC	1 cut(s)	695
MroXI	GAANNNNTTC	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	2 cut(s)	224, 836
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	741
MspI	CCGG	2 cut(s)	514, 696
MspR9I	CCNGG	1 cut(s)	241
MunI	CAATTG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	241
MvnI	CGCG	2 cut(s)	362, 421
NaeI	GCCGGC	1 cut(s)	697
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	4 cut(s)	232, 297, 335, 898
NgoMIV	GCCGGC	1 cut(s)	695
NlaIII	CATG	2 cut(s)	503, 703
NlaIV	GGNNCC	4 cut(s)	175, 234, 546, 731
NmeAIII	GCCGAG	1 cut(s)	425
NspI	RCATGY	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	325, 517
PflFI	GACNNNGTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	440, 484, 637, 675, 694
PleI	GAGTC	2 cut(s)	301, 422
PpsI	GAGTC	2 cut(s)	301, 422
Psp6I	CCWGG	1 cut(s)	239
PspFI	CCCAGC	3 cut(s)	199, 342, 741
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	175, 234, 546, 731
PspOMI	GGGCCC	1 cut(s)	729
PspPI	GGNCC	4 cut(s)	173, 345, 729, 730
PsuI	RGATCY	2 cut(s)	232, 898
PsyI	GACNNNGTC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	741
RsaI	GTAC	2 cut(s)	456, 736
RsaNI	GTAC	2 cut(s)	455, 735
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	224, 836
SatI	GCNGC	5 cut(s)	439, 483, 636, 674, 693
Sau3AI	GATC	4 cut(s)	232, 297, 335, 898
Sau96I	GGNCC	4 cut(s)	173, 345, 729, 730
SchI	GAGTC	2 cut(s)	302, 423
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	4 cut(s)	601, 733, 794, 804
SetI	ASST	9 cut(s)	76, 224, 316, 344, 443, 535, 687, 727, 743
SinI	GGWCC	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	11
SphI	GCATGC	1 cut(s)	703
Sse9I	AATT	4 cut(s)	25, 244, 808, 824
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	3 cut(s)	421, 617, 635
SspMI	CTAG	5 cut(s)	12, 81, 125, 339, 747
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	3 cut(s)	308, 583, 627
TaqI	TCGA	5 cut(s)	133, 286, 296, 550, 681
TasI	AATT	4 cut(s)	25, 244, 808, 824
TauI	GCSGC	1 cut(s)	638
TfiI	GAWTC	2 cut(s)	325, 517
Tru1I	TTAA	2 cut(s)	224, 836
Tru9I	TTAA	2 cut(s)	224, 836
TscAI	CASTG	2 cut(s)	606, 645
TseI	GCWGC	4 cut(s)	438, 482, 673, 692
TspDTI	ATGAA	1 cut(s)	913
TspGWI	ACGGA	2 cut(s)	91, 426
TspRI	CASTG	2 cut(s)	606, 645
Tth111I	GACNNNGTC	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	246
VneI	GTGCAC	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	5 cut(s)	12, 81, 125, 339, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.