Rh4BG362700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004258
Physical Location & Seq
Reverse (-)
52126578 .. 52126868
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG362700.1

Sequence Viewer

Length: 291 bp
ATGGAGGATCCAACTGGGAATTGGCTAGTTGGGGATTTGCTGGGAGAGTTTGTTGGCTTTCAAAGGGGGTCGATCAAGGTCAGCGGAGGACTGGGGTTAACTCTGCTGCGATCTGATTGGGTTGATTATGGGGTGGCGACTGGGTATGGAGATCTGACCCGGTTTGCTTCTGTTGGCGGCTGGGACGGCGTCTCACTGGGACATGGTGGTAGAGGCTTCTCGGCGGCGGTGCGAGTGTTCGGTGGCGGAGACCGTGCAGCGACGGCGCCGGCTCATGGTTCTGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

9.69

Weight (kDa)

5.44

Isoelectric Point (pI)

13.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AciI CCGC 5 cut(s) 84, 177, 224, 227, 246
AclWI GGATC 2 cut(s) 2, 15
AcyI GRCGYC 2 cut(s) 189, 266
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 196, 243
AlwI GGATC 2 cut(s) 2, 15
ApeKI GCWGC 2 cut(s) 106, 257
AspLEI GCGC 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 160
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 93, 269
BceAI ACGGC 2 cut(s) 202, 279
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 196, 243
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 269
BglII AGATCT 1 cut(s) 151
BisI GCNGC 4 cut(s) 107, 178, 225, 258
BlsI GCNGC 4 cut(s) 108, 179, 226, 259
Bme1390I CCNGG 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 9, 267
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 4 cut(s) 24, 101, 150, 206
BmuI ACTGGG 4 cut(s) 24, 101, 150, 206
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 2 cut(s) 189, 266
BsaI GGTCTC 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 4 cut(s) 19, 96, 145, 201
BseLI CCNNNNNNNGG 1 cut(s) 275
BseNI ACTGG 4 cut(s) 19, 96, 145, 201
BseXI GCAGC 2 cut(s) 93, 269
BseYI CCCAGC 2 cut(s) 40, 180
BsgI GTGCAG 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 265
BsiSI CCGG 2 cut(s) 160, 269
BslFI GGGAC 2 cut(s) 197, 213
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 196, 243
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 197, 213
Bso31I GGTCTC 1 cut(s) 243
Bsp143I GATC 4 cut(s) 7, 72, 110, 151
BspACI CCGC 5 cut(s) 84, 177, 224, 227, 246
BspLI GGNNCC 2 cut(s) 9, 267
BspPI GGATC 2 cut(s) 2, 15
BspT107I GGYRCC 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 4 cut(s) 19, 96, 145, 201
BssAI RCCGGY 1 cut(s) 268
BssMI GATC 4 cut(s) 7, 72, 110, 151
BssNI GRCGYC 2 cut(s) 189, 266
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 2 cut(s) 189, 266
BstC8I GCNNGC 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 4 cut(s) 10, 75, 113, 154
BstMAI GTCTC 2 cut(s) 196, 243
BstMBI GATC 4 cut(s) 7, 72, 110, 151
BstMWI GCNNNNNNNGC 2 cut(s) 186, 263
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 93, 269
BstX2I RGATCY 2 cut(s) 7, 151
BstYI RGATCY 2 cut(s) 7, 151
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 268
CseI GACGC 1 cut(s) 178
CviAII CATG 2 cut(s) 203, 275
CviJI RGCY 6 cut(s) 25, 57, 180, 216, 272, 288
CviKI_1 RGCY 6 cut(s) 25, 57, 180, 216, 272, 288
DinI GGCGCC 1 cut(s) 267
DpnI GATC 4 cut(s) 9, 74, 112, 153
DpnII GATC 4 cut(s) 7, 72, 110, 151
EciI GGCGGA 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 243
EgeI GGCGCC 1 cut(s) 267
EheI GGCGCC 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 2 cut(s) 206, 278
FaiI YATR 4 cut(s) 129, 147, 204, 276
FaqI GGGAC 2 cut(s) 197, 213
FatI CATG 2 cut(s) 202, 274
Fnu4HI GCNGC 4 cut(s) 107, 178, 225, 258
Fsp4HI GCNGC 4 cut(s) 107, 178, 225, 258
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 267
GluI GCNGC 4 cut(s) 107, 178, 225, 258
GsaI CCCAGC 2 cut(s) 44, 184
HaeII RGCGCY 1 cut(s) 269
HapII CCGG 2 cut(s) 160, 269
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 2 cut(s) 189, 266
Hin1II CATG 2 cut(s) 206, 278
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HpaI GTTAAC 1 cut(s) 99
HpaII CCGG 2 cut(s) 160, 269
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 115, 156
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 263
Hsp92I GRCGYC 2 cut(s) 189, 266
Hsp92II CATG 2 cut(s) 206, 278
HspAI GCGC 1 cut(s) 266
KasI GGCGCC 1 cut(s) 265
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
KspAI GTTAAC 1 cut(s) 99
Kzo9I GATC 4 cut(s) 7, 72, 110, 151
LpnPI CCDG 8 cut(s) 26, 77, 126, 166, 173, 182, 267, 282
Lsp1109I GCAGC 2 cut(s) 93, 269
MaeI CTAG 1 cut(s) 26
MalI GATC 4 cut(s) 9, 74, 112, 153
MboI GATC 4 cut(s) 7, 72, 110, 151
MflI RGATCY 2 cut(s) 7, 151
MluCI AATT 1 cut(s) 19
Mly113I GGCGCC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 2 cut(s) 80, 206
MroNI GCCGGC 1 cut(s) 268
MseI TTAA 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 2 cut(s) 160, 269
MspR9I CCNGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 186, 263
NaeI GCCGGC 1 cut(s) 270
NarI GGCGCC 1 cut(s) 266
NciI CCSGG 1 cut(s) 160
NdeII GATC 4 cut(s) 7, 72, 110, 151
NgoMIV GCCGGC 1 cut(s) 268
NlaIII CATG 2 cut(s) 206, 278
NlaIV GGNNCC 2 cut(s) 9, 267
NmeAIII GCCGAG 1 cut(s) 200
PdiI GCCGGC 1 cut(s) 270
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 4 cut(s) 108, 179, 226, 259
PluTI GGCGCC 1 cut(s) 269
PspFI CCCAGC 2 cut(s) 40, 180
PspN4I GGNNCC 2 cut(s) 9, 267
PsuI RGATCY 2 cut(s) 7, 151
PsyI GACNNNGTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 4 cut(s) 107, 178, 225, 258
Sau3AI GATC 4 cut(s) 7, 72, 110, 151
ScrFI CCNGG 1 cut(s) 160
SetI ASST 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 267
Sse9I AATT 1 cut(s) 19
SsiI CCGC 5 cut(s) 84, 177, 224, 227, 246
SspDI GGCGCC 1 cut(s) 265
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 19
TauI GCSGC 2 cut(s) 180, 227
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 106, 257
TspRI CASTG 1 cut(s) 201
Tth111I GACNNNGTC 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.