Prupe.2G264900_v2.0.a1
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0010870
Physical Location & Seq
Forward (+)
27213924 .. 27216427
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G264900.1

Sequence Viewer

Length: 1206 bp
ATGGTGCACCAACACAGAAGCCTCACGAAAGCTTATATTCAGCTCCCTTTTAAATTTCCTCACCACCATAACATGTTCAAATCAAAGACAAGCCAAAAAGAACCAAAACAGCAGCTAGAAGCCATGGATGAAACCACAGTTTCTTTGATCCTTCATGCTTGTAAGTTAGCCAGAGACCTTGAATCAAACCTACCCAACTTGGCCAACCAGCCCAACTTGCTCTCAAACTCCTTGGATGAGATCACAAGGAATTTTGTTACAGCCAGAGAGAGAGTGTATGGTCAAGATCCAAGTACTTCTTCATCTCTGCACAACATGCTTACTCTTGCGCACCAGCAGCAGATTGGTACAAGTCAAGTACAAGAATGGCTGAGGTCTAGTTATGCACAACAAGCGATGGACATTATCCAAACCCAACTTGTAGCTGATCAGAAGGAAGTTAAGATTGGCGGCTGCATCGATGACGGTGATGCAGAGGTTAAGGGCCTTCAGGCAATGGATATAGTATCAGCTTCTGACACGAACATTGCTTCATCATCCTCACAAAGACCGAGAAGAAGGAAGGATGAGGGATTAATCAGCAAAATAACAGTTCCAGCACCTCGGATTGGAAATACTGAAATCCCACCAGAGGATGGCTTCACTTGGAGAAAATATGGTCAGAAGGAGATCATGGGCTCCAGGTTCCCAAGGGGTTACTATAGGTGCACCCACCAAAAGCTCTACAATTGCCCAGCCAAGAAGCAAGTCCAGAGGCTTAACAATGATCCCTTAACATTTGAAGTAATGTACAGAGGTGAACATACTTGTCACATGTCAGCCACTGCACCTTCAGTTCCACCACCATCAGCAGAACATCATAATGCTACGCAAGGGAGTCTGGCCCAAACCCTAGCAACTACCACAACCACTGACCCTCCTACAGCATCTCTATGGCTGTCCATGGACTTTAACCCAATTAGAGGAGGCAGCGGCAGCAGCAGTAGGATGATAGGCGGCGACCGTGGCGGTGGTGGTGGAGGCAGTGGTGATGGTGCAGGCACATCCACCACCACGCGCTACGGTAAAGAAGTTGACTTTCCTGTGGTGGATTGGGCTGACGCAATGTTCAATTCAGGCAGCAGCAGCAGCAATAGTATGGATTTTATTTTCCATTCTGCTGAAAACAAATGGGAGTCAGAGGACAAGAAAAACGGAGGCCAGTAG

Protein Analysis

402

Amino Acids

44.16

Weight (kDa)

6.93

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40740 AT2G40740 AT2G40740 AT3G56390
fragaria_vesca FvH4_7g26020
malus_domestica MD01G1168500.v1.1 MD07G1234600.v1.1
prunus_persica Prupe.2G264900_v2.0.a1
pyrus_communis pycom01g18150 pycom07g21220
rosa_chinensis RchiOBHm_Chr1g0372431
rosa_laevigata RLG00000026899
rosa_multiflora Rmu_sc0001755.1_g000002
rosa_roxburghii Rroxscaffold_4G00284930
rosa_rugosa Rorug01G0371800
rosa_samantha Rh1AG380300 Rh1BG343900 Rh1CG357300 Rh1DG375100
rosa_wichuraiana Rw1G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 635
AccII CGCG 1 cut(s) 1057
AciI CCGC 4 cut(s) 450, 972, 996, 1008
AclWI GGATC 3 cut(s) 142, 281, 761
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 2 cut(s) 53, 250
AcuI CTGAAG 2 cut(s) 473, 816
AfaI GTAC 4 cut(s) 295, 349, 360, 791
AfiI CCNNNNNNNGG 4 cut(s) 608, 631, 635, 962
AflIII ACRYGT 2 cut(s) 72, 813
AgsI TTSAA 4 cut(s) 79, 182, 782, 1111
AjnI CCWGG 1 cut(s) 680
AjuI GAANNNNNNNTTGG 4 cut(s) 283, 315, 429, 461
AluBI AGCT 6 cut(s) 32, 43, 115, 425, 512, 721
AluI AGCT 6 cut(s) 32, 43, 115, 425, 512, 721
Alw21I GWGCWC 2 cut(s) 9, 710
Alw26I GTCTC 1 cut(s) 168
Alw44I GTGCAC 2 cut(s) 5, 706
AlwI GGATC 3 cut(s) 142, 281, 761
AlwNI CAGNNNCTG 2 cut(s) 515, 824
AoxI GGCC 4 cut(s) 201, 484, 882, 1198
ApaLI GTGCAC 2 cut(s) 5, 706
ApoI RAATTY 2 cut(s) 53, 250
AseI ATTAAT 1 cut(s) 575
AspLEI GCGC 2 cut(s) 331, 1059
AspS9I GGNCC 2 cut(s) 484, 883
AsuHPI GGTGA 4 cut(s) 53, 479, 809, 1040
BaeGI GKGCMC 2 cut(s) 9, 710
BalI TGGCCA 1 cut(s) 203
BanII GRGCYC 1 cut(s) 680
Bbv12I GWGCWC 2 cut(s) 9, 710
BbvCI CCTCAGC 1 cut(s) 371
BccI CCATC 4 cut(s) 391, 629, 853, 1025
BciT130I CCWGG 1 cut(s) 682
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 3 cut(s) 116, 378, 893
BfmI CTRYAG 2 cut(s) 700, 921
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 682
BmgT120I GGNCC 2 cut(s) 484, 883
BmiI GGNNCC 2 cut(s) 679, 686
BmrFI CCNGG 1 cut(s) 682
BmsI GCATC 3 cut(s) 460, 465, 935
BpmI CTGGAG 1 cut(s) 664
Bpu10I CCTNAGC 1 cut(s) 371
Bsa29I ATCGAT 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 6 cut(s) 123, 231, 602, 689, 942, 1003
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bsc4I CCNNNNNNNGG 4 cut(s) 608, 631, 635, 962
Bse1I ACTGG 1 cut(s) 1201
Bse3DI GCAATG 3 cut(s) 501, 525, 1110
BseBI CCWGG 1 cut(s) 682
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 6 cut(s) 123, 231, 602, 689, 942, 1003
BseGI GGATG 7 cut(s) 133, 241, 536, 571, 640, 993, 1043
BseLI CCNNNNNNNGG 4 cut(s) 608, 631, 635, 962
BseMI GCAATG 3 cut(s) 501, 525, 1110
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 1201
BseRI GAGGAG 1 cut(s) 978
BseSI GKGCMC 2 cut(s) 9, 710
BseYI CCCAGC 1 cut(s) 733
BsgI GTGCAG 3 cut(s) 293, 810, 1056
Bsh1236I CGCG 1 cut(s) 1057
Bsh1285I CGRYCG 1 cut(s) 1003
BshFI GGCC 4 cut(s) 203, 486, 884, 1200
BshVI ATCGAT 1 cut(s) 459
BsiEI CGRYCG 1 cut(s) 1003
BsiHKAI GWGCWC 2 cut(s) 9, 710
BslI CCNNNNNNNGG 4 cut(s) 608, 631, 635, 962
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 4 cut(s) 203, 486, 884, 1200
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 9, 680, 710
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 6 cut(s) 147, 240, 286, 427, 669, 766
Bsp19I CCATGG 2 cut(s) 123, 942
BspACI CCGC 4 cut(s) 450, 972, 996, 1008
BspANI GGCC 4 cut(s) 203, 486, 884, 1200
BspCNI CTCAG 1 cut(s) 363
BspDI ATCGAT 1 cut(s) 459
BspFNI CGCG 1 cut(s) 1057
BspLI GGNNCC 2 cut(s) 679, 686
BspPI GGATC 3 cut(s) 142, 281, 761
BspTNI GGTCTC 1 cut(s) 168
BsrDI GCAATG 3 cut(s) 501, 525, 1110
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 1 cut(s) 1201
BssECI CCNNGG 6 cut(s) 123, 231, 602, 689, 942, 1003
BssMI GATC 6 cut(s) 147, 240, 286, 427, 669, 766
BssT1I CCWWGG 4 cut(s) 123, 231, 689, 942
Bst2UI CCWGG 1 cut(s) 682
Bst4CI ACNGT 5 cut(s) 139, 467, 592, 1004, 1064
BstAPI GCANNNNNTGC 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 1039
BstDEI CTNAG 1 cut(s) 371
BstDSI CCRYGG 3 cut(s) 123, 942, 1003
BstF5I GGATG 7 cut(s) 133, 241, 536, 571, 640, 993, 1043
BstFNI CGCG 1 cut(s) 1057
BstHHI GCGC 2 cut(s) 331, 1059
BstKTI GATC 6 cut(s) 150, 243, 289, 430, 672, 769
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 6 cut(s) 147, 240, 286, 427, 669, 766
BstMCI CGRYCG 1 cut(s) 1003
BstMWI GCNNNNNNNGC 9 cut(s) 217, 316, 337, 392, 975, 978, 1005, 1125, 1128
BstNI CCWGG 1 cut(s) 682
BstNSI RCATGY 3 cut(s) 76, 319, 817
BstSCI CCNGG 1 cut(s) 680
BstSFI CTRYAG 2 cut(s) 700, 921
BstSLI GKGCMC 2 cut(s) 9, 710
BstUI CGCG 1 cut(s) 1057
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 459
BsuRI GGCC 4 cut(s) 203, 486, 884, 1200
BsuTUI ATCGAT 1 cut(s) 459
BtgI CCRYGG 3 cut(s) 123, 942, 1003
BtgZI GCGATG 1 cut(s) 410
BtsCI GGATG 7 cut(s) 133, 241, 536, 571, 640, 993, 1043
BtsI GCAGTG 2 cut(s) 822, 1030
BtsIMutI CAGTG 3 cut(s) 822, 909, 1030
Cac8I GCNNGC 1 cut(s) 1039
CaiI CAGNNNCTG 2 cut(s) 515, 824
CfoI GCGC 2 cut(s) 331, 1059
Cfr13I GGNCC 2 cut(s) 484, 883
ClaI ATCGAT 1 cut(s) 459
CseI GACGC 1 cut(s) 1109
Csp6I GTAC 4 cut(s) 294, 348, 359, 790
CviAII CATG 7 cut(s) 73, 124, 155, 316, 673, 814, 943
CviQI GTAC 4 cut(s) 294, 348, 359, 790
DdeI CTNAG 1 cut(s) 371
DpnI GATC 6 cut(s) 149, 242, 288, 429, 671, 768
DpnII GATC 6 cut(s) 147, 240, 286, 427, 669, 766
DraI TTTAAA 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 201
Eco130I CCWWGG 4 cut(s) 123, 231, 689, 942
Eco24I GRGCYC 1 cut(s) 680
Eco31I GGTCTC 1 cut(s) 168
Eco57I CTGAAG 2 cut(s) 473, 816
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 680
EcoT14I CCWWGG 4 cut(s) 123, 231, 689, 942
EcoT38I GRGCYC 1 cut(s) 680
ErhI CCWWGG 4 cut(s) 123, 231, 689, 942
FaeI CATG 7 cut(s) 76, 127, 158, 319, 676, 817, 946
FalI AAGNNNNNCTT 2 cut(s) 283, 315
FatI CATG 7 cut(s) 72, 123, 154, 315, 672, 813, 942
FbaI TGATCA 1 cut(s) 427
FokI GGATG 7 cut(s) 140, 248, 523, 578, 647, 1000, 1030
FriOI GRGCYC 1 cut(s) 680
FspBI CTAG 3 cut(s) 116, 378, 893
FspI TGCGCA 1 cut(s) 330
GlaI GCGC 2 cut(s) 330, 1058
GsaI CCCAGC 1 cut(s) 737
GsuI CTGGAG 1 cut(s) 664
HaeIII GGCC 4 cut(s) 203, 486, 884, 1200
HgaI GACGC 1 cut(s) 1109
HhaI GCGC 2 cut(s) 331, 1059
Hin1II CATG 7 cut(s) 76, 127, 158, 319, 676, 817, 946
Hin6I GCGC 2 cut(s) 329, 1057
HinP1I GCGC 2 cut(s) 329, 1057
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 3 cut(s) 182, 877, 1175
HphI GGTGA 4 cut(s) 53, 479, 809, 1040
Hpy166II GTNNAC 4 cut(s) 7, 708, 800, 1075
Hpy188I TCNGA 5 cut(s) 432, 517, 606, 663, 1180
Hpy188III TCNNGA 3 cut(s) 25, 284, 751
Hpy8I GTNNAC 4 cut(s) 7, 708, 800, 1075
HpyAV CCTTC 7 cut(s) 161, 427, 497, 552, 556, 658, 840
HpyCH4III ACNGT 5 cut(s) 139, 467, 592, 1004, 1064
HpyCH4V TGCA 8 cut(s) 7, 310, 386, 456, 473, 708, 827, 1037
HpyF10VI GCNNNNNNNGC 9 cut(s) 217, 316, 337, 392, 975, 978, 1005, 1125, 1128
HpyF3I CTNAG 1 cut(s) 371
Hsp92II CATG 7 cut(s) 76, 127, 158, 319, 676, 817, 946
HspAI GCGC 2 cut(s) 329, 1057
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 6 cut(s) 147, 240, 286, 427, 669, 766
LmnI GCTCC 2 cut(s) 48, 683
LweI GCATC 3 cut(s) 460, 465, 935
MaeI CTAG 3 cut(s) 116, 378, 893
MaeIII GTNAC 3 cut(s) 256, 695, 809
MalI GATC 6 cut(s) 149, 242, 288, 429, 671, 768
MboI GATC 6 cut(s) 147, 240, 286, 427, 669, 766
MboII GAAGA 2 cut(s) 291, 567
MfeI CAATTG 1 cut(s) 727
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 3 cut(s) 9, 680, 710
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 5 cut(s) 53, 250, 727, 957, 1111
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 2 cut(s) 886, 1184
Mox20I TGGCCA 1 cut(s) 203
MscI TGGCCA 1 cut(s) 203
MseI TTAA 7 cut(s) 51, 441, 480, 575, 759, 773, 951
MslI CAYNNNNRTG 2 cut(s) 861, 931
Msp20I TGGCCA 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 972
MspR9I CCNGG 1 cut(s) 682
MunI CAATTG 1 cut(s) 727
MvaI CCWGG 1 cut(s) 682
MvnI CGCG 1 cut(s) 1057
MwoI GCNNNNNNNGC 9 cut(s) 217, 316, 337, 392, 975, 978, 1005, 1125, 1128
NcoI CCATGG 2 cut(s) 123, 942
NdeII GATC 6 cut(s) 147, 240, 286, 427, 669, 766
NlaIII CATG 7 cut(s) 76, 127, 158, 319, 676, 817, 946
NlaIV GGNNCC 2 cut(s) 679, 686
NmuCI GTSAC 1 cut(s) 809
NsbI TGCGCA 1 cut(s) 330
NspI RCATGY 3 cut(s) 76, 319, 817
PciI ACATGT 2 cut(s) 72, 813
PfeI GAWTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 635
PleI GAGTC 2 cut(s) 885, 1183
PpsI GAGTC 2 cut(s) 885, 1183
PscI ACATGT 2 cut(s) 72, 813
PshBI ATTAAT 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 680
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 1 cut(s) 680
PspN4I GGNNCC 2 cut(s) 679, 686
PspPI GGNCC 2 cut(s) 484, 883
PstNI CAGNNNCTG 2 cut(s) 515, 824
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 4 cut(s) 295, 349, 360, 791
RsaNI GTAC 4 cut(s) 294, 348, 359, 790
RseI CAYNNNNRTG 2 cut(s) 861, 931
SaqAI TTAA 7 cut(s) 51, 441, 480, 575, 759, 773, 951
Sau3AI GATC 6 cut(s) 147, 240, 286, 427, 669, 766
Sau96I GGNCC 2 cut(s) 484, 883
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 2 cut(s) 886, 1184
ScrFI CCNGG 1 cut(s) 682
SduI GDGCHC 3 cut(s) 9, 680, 710
SfaNI GCATC 3 cut(s) 460, 465, 935
SfcI CTRYAG 2 cut(s) 700, 921
SmiMI CAYNNNNRTG 2 cut(s) 861, 931
Sse9I AATT 5 cut(s) 53, 250, 727, 957, 1111
SsiI CCGC 4 cut(s) 450, 972, 996, 1008
SspMI CTAG 3 cut(s) 116, 378, 893
StyD4I CCNGG 1 cut(s) 680
StyI CCWWGG 4 cut(s) 123, 231, 689, 942
TaaI ACNGT 5 cut(s) 139, 467, 592, 1004, 1064
TaqI TCGA 1 cut(s) 459
TaqII GACCGA 1 cut(s) 565
TasI AATT 5 cut(s) 53, 250, 727, 957, 1111
TatI WGTACW 3 cut(s) 293, 358, 789
TauI GCSGC 3 cut(s) 453, 975, 999
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 7 cut(s) 51, 441, 480, 575, 759, 773, 951
Tru9I TTAA 7 cut(s) 51, 441, 480, 575, 759, 773, 951
TscAI CASTG 3 cut(s) 829, 916, 1030
TseFI GTSAC 1 cut(s) 809
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 4 cut(s) 143, 144, 291, 522
TspRI CASTG 3 cut(s) 829, 916, 1030
Van91I CCANNNNNTGG 1 cut(s) 635
VneI GTGCAC 2 cut(s) 5, 706
VspI ATTAAT 1 cut(s) 575
XapI RAATTY 2 cut(s) 53, 250
XceI RCATGY 3 cut(s) 76, 319, 817
XcmI CCANNNNNNNNNTGG 1 cut(s) 341
XspI CTAG 3 cut(s) 116, 378, 893
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.