Rroxscaffold_4G00284930
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010870
Physical Location & Seq
Reverse (-)
6427361 .. 6429929
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284930.1

Sequence Viewer

Length: 1086 bp
ATGGATAACATTAGTGAAACCGTTTCTTTAATTCACCATGGTTGCAACTTGGCTAGAGACCTGGAATCAAACCTTCCCAACTTGGCAAGCCGACCCGAAACCGTTTCGAAATCCTTGGACGAGATAATGAGGGTTTTCGGTGCAGCAAGGGAGAGGCTGCAGAGTAGTAGTGCTGCACAACATGATCCAATGAGTTCATACGTTCATGTAGCGCAGCAGCAGCAGCAGATCGATGCGAGCTTGCAGGAATTGCTGAGGTCTAATATTTACACACAGGCAATGGAGGATCTTCACATCCAAACGCAGCGTTTTGCATCCGAAAAGAGTAGTGCTGCTACTCAATCCGATATGACTCATATGAGGGATTCAGGAGCTGACGTACTTCAAGGCCAAATCCATCAGGCAATGGATCATATTGTAACAGTCGTTTCTCATGAATTGAATGCTGCTTCGTCCTCACAAAGCAGACCACGAAGAAGGAGGGACCATGGGGAAATTCGTAAATTGACCGTGCCAGCACCTCGGATGGGGAATACTGATATCCCACCGGAGGATGGCTTCACTTGGCGAAAATACGGCCAGAAGGAAATCATGGGCTGCAGGTTCCCAAGGGGCTACTATAGGTGTACCCACCAAAAGTTATACAATTGCCCAGCCAAGAAGCAAGTTCAGAGGCTTGACAATGATCCCTTAACATTTGAAGTAGTGTACAGAGGTGACCATACATGTCATATGTCGTCCACTGCACCCTCAAGTCTACCACCATCTGATCAAATTAAGCAAGAGACTATGACCCAAACTCATGCGGCAACCACTCAACCCTTCGGAACATGGCTCTCCATGGACTTCAACGCGAGAGGTGGAGGAAGCAGCAGTGGTGGTGGCCGCGGTGGCGGTGATGGTGATGGTGACGGTGTAGGTACATCAATCACGACGACCACTCGTTATGGTAAAGACGTTGAGTTTCCGGTGGTGGATTTGGCTGATGCAATGTTTAATTCAGGGAGTAGCAGCAGTAATAGTATGGATTTTATGTTCATTTCATCTATGGACAGTAAATGGGAGTCCGGGGACAAGAAAAATTGA

Protein Analysis

361

Amino Acids

39.84

Weight (kDa)

6.15

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 184 - 244 2.6e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40740 AT2G40740 AT2G40740 AT3G56390
fragaria_vesca FvH4_7g26020
malus_domestica MD01G1168500.v1.1 MD07G1234600.v1.1
prunus_persica Prupe.2G264900_v2.0.a1
pyrus_communis pycom01g18150 pycom07g21220
rosa_chinensis RchiOBHm_Chr1g0372431
rosa_laevigata RLG00000026899
rosa_multiflora Rmu_sc0001755.1_g000002
rosa_roxburghii Rroxscaffold_4G00284930
rosa_rugosa Rorug01G0371800
rosa_samantha Rh1AG380300 Rh1BG343900 Rh1CG357300 Rh1DG375100
rosa_wichuraiana Rw1G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 591
AccI GTMKAC 1 cut(s) 757
AccII CGCG 2 cut(s) 854, 888
AciI CCGC 4 cut(s) 806, 886, 888, 894
AclWI GGATC 4 cut(s) 179, 294, 417, 680
AcoI YGGCCR 2 cut(s) 577, 883
AcsI RAATTY 1 cut(s) 495
AfaI GTAC 4 cut(s) 381, 628, 710, 922
AfiI CCNNNNNNNGG 3 cut(s) 527, 550, 554
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 4 cut(s) 386, 442, 701, 850
AjnI CCWGG 1 cut(s) 60
AloI GAACNNNNNNTCC 2 cut(s) 1019, 1051
AluBI AGCT 2 cut(s) 240, 374
AluI AGCT 2 cut(s) 240, 374
Alw26I GTCTC 2 cut(s) 51, 779
AlwI GGATC 4 cut(s) 179, 294, 417, 680
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 3 cut(s) 388, 577, 883
ApoI RAATTY 1 cut(s) 495
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 1069
AsuHPI GGTGA 5 cut(s) 26, 728, 908, 914, 920
AsuII TTCGAA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 484
BbvCI CCTCAGC 1 cut(s) 254
BccI CCATC 6 cut(s) 405, 520, 548, 772, 893, 899
BceAI ACGGC 1 cut(s) 592
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 1069
BcoDI GTCTC 2 cut(s) 51, 779
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 3 cut(s) 158, 598, 619
BfuAI ACCTGC 1 cut(s) 591
BglI GCCNNNNNGGC 1 cut(s) 891
Bme1390I CCNGG 2 cut(s) 62, 1069
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 2 cut(s) 485, 605
BmrFI CCNGG 2 cut(s) 62, 1069
BmsI GCATC 3 cut(s) 223, 323, 976
Bpu10I CCTNAGC 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 736
BpuMI CCSGG 1 cut(s) 1069
Bsa29I ATCGAT 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 8 cut(s) 37, 114, 487, 521, 608, 840, 886, 1068
BsaWI WCCGGW 2 cut(s) 547, 967
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 3 cut(s) 527, 550, 554
Bse3DI GCAATG 3 cut(s) 285, 411, 996
BseBI CCWGG 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 8 cut(s) 37, 114, 487, 521, 608, 840, 886, 1068
BseGI GGATG 4 cut(s) 294, 314, 531, 559
BseLI CCNNNNNNNGG 3 cut(s) 527, 550, 554
BseMI GCAATG 3 cut(s) 285, 411, 996
BseMII CTCAG 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 652
BsgI GTGCAG 3 cut(s) 159, 162, 729
Bsh1236I CGCG 2 cut(s) 854, 888
BshFI GGCC 3 cut(s) 390, 579, 885
BshVI ATCGAT 1 cut(s) 231
BsiSI CCGG 3 cut(s) 548, 968, 1068
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 527, 550, 554
BsmAI GTCTC 2 cut(s) 51, 779
BsmFI GGGAC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 3 cut(s) 390, 579, 885
Bso31I GGTCTC 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 6 cut(s) 184, 228, 286, 409, 685, 769
Bsp19I CCATGG 3 cut(s) 37, 487, 840
BspACI CCGC 4 cut(s) 806, 886, 888, 894
BspANI GGCC 3 cut(s) 390, 579, 885
BspCNI CTCAG 1 cut(s) 246
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 2 cut(s) 854, 888
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 485, 605
BspMAI CTGCAG 2 cut(s) 162, 602
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 4 cut(s) 179, 294, 417, 680
BspT104I TTCGAA 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 3 cut(s) 285, 411, 996
BsrGI TGTACA 1 cut(s) 708
BssECI CCNNGG 8 cut(s) 37, 114, 487, 521, 608, 840, 886, 1068
BssMI GATC 6 cut(s) 184, 228, 286, 409, 685, 769
BssT1I CCWWGG 5 cut(s) 37, 114, 487, 608, 840
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 6 cut(s) 22, 103, 424, 511, 914, 1055
BstAPI GCANNNNNTGC 1 cut(s) 250
BstAUI TGTACA 1 cut(s) 708
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 4 cut(s) 88, 238, 242, 516
BstDEI CTNAG 1 cut(s) 254
BstDSI CCRYGG 4 cut(s) 37, 487, 840, 886
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 4 cut(s) 294, 314, 531, 559
BstFNI CGCG 2 cut(s) 854, 888
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 6 cut(s) 187, 231, 289, 412, 688, 772
BstMAI GTCTC 2 cut(s) 51, 779
BstMBI GATC 6 cut(s) 184, 228, 286, 409, 685, 769
BstMWI GCNNNNNNNGC 4 cut(s) 220, 223, 250, 891
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 729
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 60, 1067
BstSFI CTRYAG 3 cut(s) 158, 598, 619
BstUI CGCG 2 cut(s) 854, 888
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 231
BsuRI GGCC 3 cut(s) 390, 579, 885
BsuTUI ATCGAT 1 cut(s) 231
BtgI CCRYGG 4 cut(s) 37, 487, 840, 886
BtsCI GGATG 4 cut(s) 294, 314, 531, 559
BtsI GCAGTG 2 cut(s) 741, 880
BtsIMutI CAGTG 2 cut(s) 741, 880
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 4 cut(s) 88, 238, 242, 516
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 484
Cfr42I CCGCGG 1 cut(s) 889
ClaI ATCGAT 1 cut(s) 231
Csp6I GTAC 4 cut(s) 380, 627, 709, 921
CviQI GTAC 4 cut(s) 380, 627, 709, 921
DdeI CTNAG 1 cut(s) 254
DpnI GATC 6 cut(s) 186, 230, 288, 411, 687, 771
DpnII GATC 6 cut(s) 184, 228, 286, 409, 685, 769
EaeI YGGCCR 2 cut(s) 577, 883
Eco130I CCWWGG 5 cut(s) 37, 114, 487, 608, 840
Eco31I GGTCTC 1 cut(s) 51
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 484
Eco91I GGTNACC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 60
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 5 cut(s) 37, 114, 487, 608, 840
ErhI CCWWGG 5 cut(s) 37, 114, 487, 608, 840
FaqI GGGAC 1 cut(s) 497
FauNDI CATATG 2 cut(s) 357, 732
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 757
FokI GGATG 4 cut(s) 281, 301, 538, 566
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 656
HaeIII GGCC 3 cut(s) 390, 579, 885
HapII CCGG 3 cut(s) 548, 968, 1068
HhaI GCGC 1 cut(s) 214
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 4 cut(s) 65, 352, 365, 1064
HpaII CCGG 3 cut(s) 548, 968, 1068
HphI GGTGA 5 cut(s) 26, 728, 908, 914, 920
Hpy166II GTNNAC 4 cut(s) 627, 709, 741, 758
Hpy188I TCNGA 6 cut(s) 319, 346, 525, 672, 769, 827
Hpy188III TCNNGA 3 cut(s) 369, 434, 931
Hpy8I GTNNAC 4 cut(s) 627, 709, 741, 758
Hpy99I CGWCG 1 cut(s) 937
HpyAV CCTTC 4 cut(s) 83, 471, 577, 832
HpyCH4III ACNGT 6 cut(s) 22, 103, 424, 511, 914, 1055
HpyCH4IV ACGT 3 cut(s) 201, 378, 957
HpyCH4V TGCA 9 cut(s) 45, 143, 160, 176, 244, 314, 600, 746, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 223, 250, 891
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 3 cut(s) 201, 378, 957
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 769
KspI CCGCGG 1 cut(s) 889
Kzo9I GATC 6 cut(s) 184, 228, 286, 409, 685, 769
LmnI GCTCC 1 cut(s) 371
LweI GCATC 3 cut(s) 223, 323, 976
MaeI CTAG 1 cut(s) 54
MaeII ACGT 3 cut(s) 201, 378, 957
MaeIII GTNAC 3 cut(s) 418, 716, 908
MalI GATC 6 cut(s) 186, 230, 288, 411, 687, 771
MboI GATC 6 cut(s) 184, 228, 286, 409, 685, 769
MboII GAAGA 2 cut(s) 281, 486
MfeI CAATTG 1 cut(s) 646
MflI RGATCY 1 cut(s) 286
MluCI AATT 9 cut(s) 30, 248, 437, 495, 503, 646, 774, 997, 1081
MlyI GAGTC 2 cut(s) 346, 1073
MseI TTAA 4 cut(s) 29, 692, 777, 996
MspA1I CMGCKG 1 cut(s) 888
MspI CCGG 3 cut(s) 548, 968, 1068
MspR9I CCNGG 2 cut(s) 62, 1069
MunI CAATTG 1 cut(s) 646
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 2 cut(s) 854, 888
MwoI GCNNNNNNNGC 4 cut(s) 220, 223, 250, 891
NciI CCSGG 1 cut(s) 1069
NcoI CCATGG 3 cut(s) 37, 487, 840
NdeI CATATG 2 cut(s) 357, 732
NdeII GATC 6 cut(s) 184, 228, 286, 409, 685, 769
NlaIV GGNNCC 2 cut(s) 485, 605
NmuCI GTSAC 2 cut(s) 716, 908
NspI RCATGY 1 cut(s) 729
NspV TTCGAA 1 cut(s) 107
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 725
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 2 cut(s) 65, 365
PleI GAGTC 2 cut(s) 346, 1072
PpsI GAGTC 2 cut(s) 346, 1072
PscI ACATGT 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 60
PspEI GGTNACC 1 cut(s) 716
PspFI CCCAGC 1 cut(s) 652
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 2 cut(s) 485, 605
PspPI GGNCC 1 cut(s) 484
PstI CTGCAG 2 cut(s) 162, 602
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 4 cut(s) 381, 628, 710, 922
RsaNI GTAC 4 cut(s) 380, 627, 709, 921
SacII CCGCGG 1 cut(s) 889
SaqAI TTAA 4 cut(s) 29, 692, 777, 996
Sau3AI GATC 6 cut(s) 184, 228, 286, 409, 685, 769
Sau96I GGNCC 1 cut(s) 484
SchI GAGTC 2 cut(s) 346, 1073
ScrFI CCNGG 2 cut(s) 62, 1069
SfaNI GCATC 3 cut(s) 223, 323, 976
SfcI CTRYAG 3 cut(s) 158, 598, 619
Sfr303I CCGCGG 1 cut(s) 889
SfuI TTCGAA 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 889
SinI GGWCC 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 751
SmoI CTYRAG 1 cut(s) 751
Sse9I AATT 9 cut(s) 30, 248, 437, 495, 503, 646, 774, 997, 1081
SsiI CCGC 4 cut(s) 806, 886, 888, 894
SspI AATATT 1 cut(s) 265
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 60, 1067
StyI CCWWGG 5 cut(s) 37, 114, 487, 608, 840
TaaI ACNGT 6 cut(s) 22, 103, 424, 511, 914, 1055
TaiI ACGT 3 cut(s) 204, 381, 960
TaqI TCGA 2 cut(s) 107, 231
TasI AATT 9 cut(s) 30, 248, 437, 495, 503, 646, 774, 997, 1081
TatI WGTACW 1 cut(s) 708
TauI GCSGC 2 cut(s) 809, 888
TfiI GAWTC 2 cut(s) 65, 365
Tru1I TTAA 4 cut(s) 29, 692, 777, 996
Tru9I TTAA 4 cut(s) 29, 692, 777, 996
TscAI CASTG 2 cut(s) 748, 880
TseFI GTSAC 2 cut(s) 716, 908
Tsp45I GTSAC 2 cut(s) 716, 908
TspDTI ATGAA 5 cut(s) 186, 194, 450, 1027, 1032
TspRI CASTG 2 cut(s) 748, 880
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 1 cut(s) 495
XceI RCATGY 1 cut(s) 729
XmiI GTMKAC 1 cut(s) 757
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.