Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Forward (+)

17129753 .. 17132386

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41070.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGTTCTATTAGAGGAAACATTGAAGAGCCTATATCTCAGTCATTAACGAGGCAGAACTCTCTCTATAGCTTAAAGCTCCATGAGGTTCAAACCCACTTAGGAAGTTCTGGAAAACCACTAGGAAGCATGAACCTTGATGAGCTTCTCAAGACTGTCTTGCCACCAGCTGAGGAAGGGCTTGTTCGTCAGGGAAGCTTGACGTTACCTCGAGATCTCAGTAAAAAGACAGTTGATGAGGTCTGGAGAGATATCCAACAGGACAAGAATGGAAACGGTACTAGTACTACTACTACTCATAAGCAGCCTACACTCGGTGAAATAACACTTGAGGATTTGTTGTTGAGAGCTGGTGTAGTGACTGAGACAGTAGTCCCTCAAGAAAATGTTGTTAACATAGCTTCAAATGGGCAATGGGTTGAGTATCATCATCAGCCTCAACAACAACAAGGGTTTATGACATATCCGGTTTGCGAGATGCAAGATATGGTGATGATGGGTGGATTATCGGATACACCACAAGCGCCTGGGAGGAAAAGAGTAGCTGGAGAGATTGTGGAGAAGACTGTTGAGAGGAGACAGAAGAGGATGATCAAGAACAGAGAATCTGCAGCACGTTCACGAGCTAGGAAACAGGCTTATACACATGAATTAGAGATCAAGGTTTCAAGGTTAGAAGAAGAAAACGAAAAACTTCGGAGGCTAAAGGAGGTGGAGAAGATCCTACCAAGTGAACCACCACCAGATCCTAAGTGGAAGCTCCGGCGAACAAACTCTGCTTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

262

Amino Acids

29.62

Weight (kDa)

8.89

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	189 - 234	3.3e-11	Basic region leucine zipper
bZIP_1	PF00170	192 - 233	1.5e-13	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	715, 740
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	280, 286
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	4 cut(s)	26, 92, 405, 669
AhlI	ACTAGT	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	526
Alw26I	GTCTC	2 cut(s)	359, 571
AlwI	GGATC	2 cut(s)	715, 740
Ama87I	CYCGRG	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	304, 611
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	526
AsuHPI	GGTGA	2 cut(s)	329, 502
AvaI	CYCGRG	1 cut(s)	210
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	316, 623
BccI	CCATC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	505
BclI	TGATCA	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	359, 571
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	3 cut(s)	122, 282, 627
BfmI	CTRYAG	2 cut(s)	67, 609
BfoI	RGCGCY	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	505
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	2 cut(s)	305, 612
BlsI	GCNGC	2 cut(s)	306, 613
BmcAI	AGTACT	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	528
BmeT110I	CYCGRG	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	468
BoxI	GACNNNNGTC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	569
BpmI	CTGGAG	2 cut(s)	265, 567
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	3 cut(s)	134, 350, 363
BsaJI	CCNNGG	1 cut(s)	527
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	1 cut(s)	594
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	4 cut(s)	53, 162, 232, 354
BseRI	GAGGAG	1 cut(s)	589
BseXI	GCAGC	2 cut(s)	316, 623
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	467, 763
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	359, 571
BsmFI	GGGAC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	210
Bsp143I	GATC	5 cut(s)	214, 591, 657, 720, 745
BspCNI	CTCAG	4 cut(s)	52, 163, 231, 355
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	2 cut(s)	715, 740
BspQI	GCTCTTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	5 cut(s)	214, 591, 657, 720, 745
BssSI	CACGAG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	5 cut(s)	157, 232, 278, 370, 568
Bst6I	CTCTTC	2 cut(s)	21, 578
BstDEI	CTNAG	6 cut(s)	39, 100, 171, 218, 363, 750
BstF5I	GGATG	1 cut(s)	594
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	5 cut(s)	217, 594, 660, 723, 748
BstMAI	GTCTC	2 cut(s)	359, 571
BstMBI	GATC	5 cut(s)	214, 591, 657, 720, 745
BstNI	CCWGG	1 cut(s)	528
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	2 cut(s)	67, 609
BstV1I	GCAGC	2 cut(s)	316, 623
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	3 cut(s)	214, 720, 745
BstYI	RGATCY	3 cut(s)	214, 720, 745
BsuI	GTATCC	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	594
CfoI	GCGC	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	279, 285
CviAII	CATG	3 cut(s)	83, 130, 647
CviQI	GTAC	2 cut(s)	279, 285
DdeI	CTNAG	6 cut(s)	39, 100, 171, 218, 363, 750
DpnI	GATC	5 cut(s)	216, 593, 659, 722, 747
DpnII	GATC	5 cut(s)	214, 591, 657, 720, 745
DraIII	CACNNNGTG	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	21, 578
EarI	CTCTTC	2 cut(s)	21, 578
Eco32I	GATATC	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	3 cut(s)	86, 133, 650
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	3 cut(s)	82, 129, 646
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	2 cut(s)	305, 612
FokI	GGATG	1 cut(s)	601
Fsp4HI	GCNGC	2 cut(s)	305, 612
FspBI	CTAG	3 cut(s)	122, 282, 627
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	2 cut(s)	305, 612
GsuI	CTGGAG	2 cut(s)	265, 567
HaeII	RGCGCY	1 cut(s)	527
HapII	CCGG	2 cut(s)	467, 763
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	3 cut(s)	86, 133, 650
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	1 cut(s)	605
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	2 cut(s)	467, 763
HphI	GGTGA	2 cut(s)	329, 502
Hpy166II	GTNNAC	3 cut(s)	394, 620, 734
Hpy188I	TCNGA	3 cut(s)	511, 699, 788
Hpy188III	TCNNGA	7 cut(s)	111, 151, 212, 244, 380, 595, 621
Hpy8I	GTNNAC	3 cut(s)	394, 620, 734
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	5 cut(s)	157, 232, 278, 370, 568
HpyCH4IV	ACGT	2 cut(s)	203, 616
HpyCH4V	TGCA	2 cut(s)	481, 611
HpyF3I	CTNAG	6 cut(s)	39, 100, 171, 218, 363, 750
HpySE526I	ACGT	2 cut(s)	203, 616
Hsp92II	CATG	3 cut(s)	86, 133, 650
HspAI	GCGC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	591
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	5 cut(s)	214, 591, 657, 720, 745
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	84, 765
Lsp1109I	GCAGC	2 cut(s)	316, 623
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	3 cut(s)	122, 282, 627
MaeII	ACGT	2 cut(s)	203, 616
MaeIII	GTNAC	2 cut(s)	204, 358
MalI	GATC	5 cut(s)	216, 593, 659, 722, 747
MboI	GATC	5 cut(s)	214, 591, 657, 720, 745
MboII	GAAGA	6 cut(s)	38, 574, 595, 689, 692, 730
MflI	RGATCY	3 cut(s)	214, 720, 745
MluCI	AATT	1 cut(s)	650
MmeI	TCCRAC	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	3 cut(s)	47, 74, 393
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	467, 763
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
NdeII	GATC	5 cut(s)	214, 591, 657, 720, 745
NlaIII	CATG	3 cut(s)	86, 133, 650
NmuCI	GTSAC	1 cut(s)	358
PaeR7I	CTCGAG	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	306, 613
PshAI	GACNNNNGTC	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	3 cut(s)	214, 720, 745
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	280, 286
RsaNI	GTAC	2 cut(s)	279, 285
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	47, 74, 393
SatI	GCNGC	2 cut(s)	305, 612
Sau3AI	GATC	5 cut(s)	214, 591, 657, 720, 745
ScaI	AGTACT	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	2 cut(s)	67, 609
Sfr274I	CTCGAG	1 cut(s)	210
SlaI	CTCGAG	1 cut(s)	210
SmlI	CTYRAG	4 cut(s)	149, 210, 329, 378
SmoI	CTYRAG	4 cut(s)	149, 210, 329, 378
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	1 cut(s)	650
SspMI	CTAG	3 cut(s)	122, 282, 627
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	5 cut(s)	157, 232, 278, 370, 568
TaiI	ACGT	2 cut(s)	206, 619
TaqI	TCGA	1 cut(s)	211
TasI	AATT	1 cut(s)	650
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	3 cut(s)	47, 74, 393
Tru9I	TTAA	3 cut(s)	47, 74, 393
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	304, 611
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	146, 663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	750
XhoI	CTCGAG	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	3 cut(s)	122, 282, 627
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.