Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Forward (+)

49551390 .. 49556795

Gene Structure 5406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029810

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCTCAAGGTGGGGCTGATGGTAATTGCAAACAGTCACAGTTCCAGCCTTTGACAAGACAAAACTCGATTTACAGTCTCACGCTTGATGAGGTACAAAATCAGTTAGGTGACTTGGGGAAGCCACTCTGCAGCATGAACCTTGATGAACTTCTCAAAAGTGTATGGAGTGCTGAGGCGAACCAGACCATGGGTATGGACATTGAAGGTACTGCAATGATCAATCAAGCTTCCCTGCAGCGTCAGGCTAGCCTGTCATTGACTAGTGCATTGAGCAAGAAGACGGTCGATGAGGTTTGGAGAGATATTCAACAGAGTAAAGATAATGAGGAAAAGAGATCACGAGAACGACAACCTACTTTGGGAGAGATGACTTTGGAGGATTTCTTGGTCAAAGCAGGAGTTGTTGCTGAAGCATCAGACAAAAAAAATGCTGGTGCTCCTCTTGTAGGCATTGATCCAAATGTCGCATCGCAGTTTCCACAAGGCCAGTGGCTGCAGTACCCACAACCACAATATCAGCATCCACAGCAAAGCATGATGGGGGTATATATGCCAAATCAGCCTATACCACCTCCAATGCACGTAGGGGCTGGTGCTGTAATGGATGTGCCTTACCCTGATAACCAGCTTGCAATGCCTTCACCATTAATGGGTACATTATCAGATACACAGACACCTGGGAGGAAAAGGGGCAACCCAGAGGACATAGTTGAGAAGACTGTTGAGAGGAGGCAGAAGAGAATGATAAAGAACCGGGAATCTGCTGCTCGTTCACGTGCAAGGAAGCAGGCTTATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAGGAGGAAAATGAAAGGCTAAGGAAGCAAAAGGAGCTAGAGAAGGTGTTGCCTAGTGCACCACCTCCTGAGCCAAAGTATCAGCTTCGCAGAACAACATCAGCTCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

316

Amino Acids

35.23

Weight (kDa)

7.69

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	242 - 289	3.6e-10	Basic region leucine zipper
bZIP_1	PF00170	245 - 289	1.2e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AclWI	GGATC	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	782
AfaI	GTAC	4 cut(s)	99, 214, 506, 661
AfiI	CCNNNNNNNGG	4 cut(s)	193, 365, 452, 656
AgsI	TTSAA	2 cut(s)	209, 314
AhlI	ACTAGT	1 cut(s)	266
AjiI	CACGTC	1 cut(s)	830
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	5 cut(s)	233, 634, 871, 919, 938
AluI	AGCT	5 cut(s)	233, 634, 871, 919, 938
Alw21I	GWGCWC	2 cut(s)	445, 895
Alw26I	GTCTC	1 cut(s)	86
Alw44I	GTGCAC	1 cut(s)	891
AlwI	GGATC	1 cut(s)	455
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	1 cut(s)	490
ApaLI	GTGCAC	1 cut(s)	891
ApeKI	GCWGC	4 cut(s)	135, 241, 499, 770
AseI	ATTAAT	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	2 cut(s)	125, 639
AsuNHI	GCTAGC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	895
BauI	CACGAG	1 cut(s)	345
BbrPI	CACGTG	1 cut(s)	782
BbsI	GAAGAC	2 cut(s)	290, 728
Bbv12I	GWGCWC	2 cut(s)	445, 895
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	147, 253, 486, 757
BccI	CCATC	2 cut(s)	17, 538
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	4 cut(s)	252, 267, 872, 888
BfmI	CTRYAG	3 cut(s)	133, 239, 500
BisI	GCNGC	4 cut(s)	136, 242, 500, 771
BlsI	GCNGC	4 cut(s)	137, 243, 501, 772
Bme1390I	CCNGG	2 cut(s)	684, 761
BmgBI	CACGTC	1 cut(s)	830
BmrFI	CCNGG	2 cut(s)	684, 761
BmsI	GCATC	3 cut(s)	428, 482, 535
BmtI	GCTAGC	1 cut(s)	255
BpiI	GAAGAC	2 cut(s)	290, 728
BpmI	CTGGAG	2 cut(s)	833, 854
Bpu10I	CCTNAGC	3 cut(s)	177, 854, 903
BpuMI	CCSGG	1 cut(s)	761
BsaAI	YACGTR	2 cut(s)	589, 782
BsaJI	CCNNGG	2 cut(s)	192, 683
BsaXI	ACNNNNNCTCC	1 cut(s)	922
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 365, 452, 656
Bse1I	ACTGG	2 cut(s)	493, 816
Bse3DI	GCAATG	2 cut(s)	225, 645
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	192, 683
BseGI	GGATG	2 cut(s)	526, 616
BseLI	CCNNNNNNNGG	4 cut(s)	193, 365, 452, 656
BseMI	GCAATG	2 cut(s)	225, 645
BseMII	CTCAG	2 cut(s)	168, 894
BseNI	ACTGG	2 cut(s)	493, 816
BseRI	GAGGAG	3 cut(s)	435, 748, 851
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	4 cut(s)	147, 253, 486, 757
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	445, 895
BsiSI	CCGG	1 cut(s)	760
BslI	CCNNNNNNNGG	4 cut(s)	193, 365, 452, 656
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	492
Bsp1286I	GDGCHC	2 cut(s)	445, 895
Bsp143I	GATC	3 cut(s)	222, 341, 460
Bsp19I	CCATGG	1 cut(s)	192
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	169, 895
BspMAI	CTGCAG	3 cut(s)	137, 243, 504
BspOI	GCTAGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	455
BsrDI	GCAATG	2 cut(s)	225, 645
BsrI	ACTGG	2 cut(s)	493, 816
BssECI	CCNNGG	2 cut(s)	192, 683
BssMI	GATC	3 cut(s)	222, 341, 460
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	5 cut(s)	39, 45, 80, 289, 727
Bst6I	CTCTTC	1 cut(s)	737
BstBAI	YACGTR	2 cut(s)	589, 782
BstC8I	GCNNGC	3 cut(s)	253, 636, 795
BstDEI	CTNAG	3 cut(s)	177, 854, 903
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	526, 616
BstKTI	GATC	3 cut(s)	225, 344, 463
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	222, 341, 460
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	5 cut(s)	532, 565, 640, 859, 868
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	2 cut(s)	682, 759
BstSFI	CTRYAG	3 cut(s)	133, 239, 500
BstSLI	GKGCMC	1 cut(s)	895
BstV1I	GCAGC	4 cut(s)	147, 253, 486, 757
BstV2I	GAAGAC	2 cut(s)	290, 728
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	459
BtrI	CACGTC	1 cut(s)	830
BtsCI	GGATG	2 cut(s)	526, 616
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	3 cut(s)	253, 636, 795
CaiI	CAGNNNCTG	1 cut(s)	499
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	4 cut(s)	98, 213, 505, 660
CspCI	CAANNNNNGTGG	2 cut(s)	476, 511
CviAII	CATG	3 cut(s)	139, 193, 541
CviQI	GTAC	4 cut(s)	98, 213, 505, 660
DdeI	CTNAG	3 cut(s)	177, 854, 903
DpnI	GATC	3 cut(s)	224, 343, 462
DpnII	GATC	3 cut(s)	222, 341, 460
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	435
Eco72I	CACGTG	1 cut(s)	782
EcoNI	CCTNNNNNAGG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	142, 196, 544
FatI	CATG	3 cut(s)	138, 192, 540
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	4 cut(s)	136, 242, 500, 771
FokI	GGATG	2 cut(s)	513, 623
Fsp4HI	GCNGC	4 cut(s)	136, 242, 500, 771
FspBI	CTAG	4 cut(s)	252, 267, 872, 888
GluI	GCNGC	4 cut(s)	136, 242, 500, 771
GsuI	CTGGAG	2 cut(s)	833, 854
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	1 cut(s)	760
HgaI	GACGC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	142, 196, 544
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	764
HpaII	CCGG	1 cut(s)	760
HphI	GGTGA	2 cut(s)	125, 639
Hpy166II	GTNNAC	2 cut(s)	779, 893
Hpy188I	TCNGA	3 cut(s)	424, 670, 947
Hpy188III	TCNNGA	3 cut(s)	345, 833, 902
Hpy8I	GTNNAC	2 cut(s)	779, 893
HpyAV	CCTTC	3 cut(s)	203, 654, 871
HpyCH4III	ACNGT	5 cut(s)	39, 45, 80, 289, 727
HpyCH4IV	ACGT	3 cut(s)	588, 781, 829
HpyF10VI	GCNNNNNNNGC	5 cut(s)	532, 565, 640, 859, 868
HpyF3I	CTNAG	3 cut(s)	177, 854, 903
HpySE526I	ACGT	3 cut(s)	588, 781, 829
Hsp92II	CATG	3 cut(s)	142, 196, 544
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	222, 341, 460
LmnI	GCTCC	3 cut(s)	448, 868, 943
Lsp1109I	GCAGC	4 cut(s)	147, 253, 486, 757
LweI	GCATC	3 cut(s)	428, 482, 535
MaeI	CTAG	4 cut(s)	252, 267, 872, 888
MaeII	ACGT	3 cut(s)	588, 781, 829
MaeIII	GTNAC	2 cut(s)	39, 113
MalI	GATC	3 cut(s)	224, 343, 462
MboI	GATC	3 cut(s)	222, 341, 460
MboII	GAAGA	3 cut(s)	295, 733, 754
MhlI	GDGCHC	2 cut(s)	445, 895
MluCI	AATT	1 cut(s)	28
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	1 cut(s)	197
MspI	CCGG	1 cut(s)	760
MspR9I	CCNGG	2 cut(s)	684, 761
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	5 cut(s)	532, 565, 640, 859, 868
NciI	CCSGG	1 cut(s)	761
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	222, 341, 460
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	3 cut(s)	142, 196, 544
NmuCI	GTSAC	2 cut(s)	39, 113
PfeI	GAWTC	1 cut(s)	764
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	4 cut(s)	137, 243, 501, 772
PmaCI	CACGTG	1 cut(s)	782
PmlI	CACGTG	1 cut(s)	782
Ppu21I	YACGTR	2 cut(s)	589, 782
PshBI	ATTAAT	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	682
PspCI	CACGTG	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	682
PstI	CTGCAG	3 cut(s)	137, 243, 504
PstNI	CAGNNNCTG	1 cut(s)	499
RsaI	GTAC	4 cut(s)	99, 214, 506, 661
RsaNI	GTAC	4 cut(s)	98, 213, 505, 660
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	4 cut(s)	136, 242, 500, 771
Sau3AI	GATC	3 cut(s)	222, 341, 460
ScrFI	CCNGG	2 cut(s)	684, 761
SduI	GDGCHC	2 cut(s)	445, 895
SfaNI	GCATC	3 cut(s)	428, 482, 535
SfcI	CTRYAG	3 cut(s)	133, 239, 500
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	1 cut(s)	28
SspMI	CTAG	4 cut(s)	252, 267, 872, 888
StyD4I	CCNGG	2 cut(s)	682, 759
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	5 cut(s)	39, 45, 80, 289, 727
TaiI	ACGT	3 cut(s)	591, 784, 832
TaqI	TCGA	2 cut(s)	71, 291
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	1 cut(s)	500
TseFI	GTSAC	2 cut(s)	39, 113
TseI	GCWGC	4 cut(s)	135, 241, 499, 770
Tsp45I	GTSAC	2 cut(s)	39, 113
TspDTI	ATGAA	4 cut(s)	155, 165, 822, 861
TspRI	CASTG	1 cut(s)	500
Van91I	CCANNNNNTGG	1 cut(s)	193
VneI	GTGCAC	1 cut(s)	891
VspI	ATTAAT	1 cut(s)	653
XagI	CCTNNNNNAGG	1 cut(s)	450
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
XspI	CTAG	4 cut(s)	252, 267, 872, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.