Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Reverse (-)

4855919 .. 4861129

Gene Structure 5211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1052500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGATACAGACAATGGGATCTCAAGGTGGGGCTGATGGTAATTGCAAACAGCCACAGTTTCAGCCTTTGGGACGGCAAAACTCAATGTACAGTCTCACATTGGATGAGGTACAGAATCAGTTAGGTGACTTGGGGAAGCCACTCAGCAGCATGAACCTTGATGAGCTTCTAAAAAATGTATGGAGTGTGGAAGCAAATCAGACCATGGGCATAGATATTGAAGGCACGACACTGGTCAATCAAGCTCAACTGCAGCGTCAAGCAAGCCTGTCATTAACTAGTGCATTGAGCAAGAAGACAGTCGATGAGGTTTGGAGAGATATTCAACAAAGCAAAGACGAAGAAGAAAAGAAATCTCAAGAACGACAACGGACTTTGGGAGAGATGACTTTGGAGGATTTCTTGGTCAAAGCCGGAGTTGTTGCTGAAGCTGAAGCATCTTCGGACAAACAATGTGCTGGTCCTCTTGTTGGGGTTGATGCGAATGTGGCAGCACAGTTTCCACAAGGTCAGTGGATGCAGTACTCACAACCACAATATCAGCATCCACAACAAAGTATGATGGGGGTATACATGCCAAGCCAACCTATACCACCGCCAATGCACGTAGGGGCTGGAGCTATGATGGAAGTCCCGTATCCTGACAACCAAGTTCCATTGCCTTCACCCTTAATGGGTGCTCTATCAGATACGCCGACACCTGGGAGGAAAAGGGGCAACCCTGAGGACATTGTTGAGAAGACTGTTGAGCGAAGGCAAAAGAGAATGATAAAGAACCGGGAATCTGCTGCGCGTTCGCGAGCAAGGAAGCAGGCATATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAGGAGGAAAATGAAAGGCTAAGGAAACAGAAGGAGCTAGAGAAGGTGTTGCCCAGTGCACCGCCTCCGGAGCCAAAGTACCAGCTTCGGAGAACATCATCAGCTCCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

323

Amino Acids

35.89

Weight (kDa)

5.94

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	249 - 296	3.7e-10	Basic region leucine zipper
bZIP_1	PF00170	252 - 296	1.3e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	2 cut(s)	796, 802
AccIII	TCCGGA	1 cut(s)	922
AciI	CCGC	2 cut(s)	599, 917
AclWI	GGATC	1 cut(s)	28
AcuI	CTGAAG	2 cut(s)	450, 456
AfaI	GTAC	4 cut(s)	92, 114, 527, 935
AfiI	CCNNNNNNNGG	3 cut(s)	473, 677, 704
AgsI	TTSAA	2 cut(s)	224, 329
AhlI	ACTAGT	1 cut(s)	281
AjiI	CACGTC	1 cut(s)	851
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	7 cut(s)	169, 248, 434, 623, 892, 940, 959
AluI	AGCT	7 cut(s)	169, 248, 434, 623, 892, 940, 959
Alw21I	GWGCWC	2 cut(s)	685, 916
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	912
AlwI	GGATC	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	922
ApaLI	GTGCAC	1 cut(s)	912
ApeKI	GCWGC	4 cut(s)	150, 256, 494, 791
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	782
AsuHPI	GGTGA	2 cut(s)	140, 660
AvaII	GGWCC	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	916
BbsI	GAAGAC	2 cut(s)	305, 749
Bbv12I	GWGCWC	2 cut(s)	685, 916
BbvI	GCAGC	4 cut(s)	162, 268, 506, 778
BccI	CCATC	3 cut(s)	32, 559, 622
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	705
BciVI	GTATCC	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	782
BcoDI	GTCTC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	2 cut(s)	282, 893
BfmI	CTRYAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	4 cut(s)	151, 257, 495, 792
BlsI	GCNGC	4 cut(s)	152, 258, 496, 793
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	2 cut(s)	705, 782
Bme18I	GGWCC	1 cut(s)	464
BmgBI	CACGTC	1 cut(s)	851
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	927
BmrFI	CCNGG	2 cut(s)	705, 782
BmrI	ACTGGG	1 cut(s)	903
BmsI	GCATC	4 cut(s)	449, 472, 510, 556
BmuI	ACTGGG	1 cut(s)	903
BoxI	GACNNNNGTC	1 cut(s)	236
BpiI	GAAGAC	2 cut(s)	305, 749
BpmI	CTGGAG	3 cut(s)	639, 854, 875
Bpu10I	CCTNAGC	1 cut(s)	875
BpuEI	CTTGAG	2 cut(s)	9, 345
BpuMI	CCSGG	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	610
BsaJI	CCNNGG	2 cut(s)	207, 704
BsaWI	WCCGGW	1 cut(s)	922
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bsc4I	CCNNNNNNNGG	3 cut(s)	473, 677, 704
Bse1I	ACTGG	3 cut(s)	240, 837, 909
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	659
BseAI	TCCGGA	1 cut(s)	922
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	207, 704
BseGI	GGATG	3 cut(s)	112, 525, 547
BseLI	CCNNNNNNNGG	3 cut(s)	473, 677, 704
BseMI	GCAATG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	160, 717
BseNI	ACTGG	3 cut(s)	240, 837, 909
BseRI	GAGGAG	1 cut(s)	872
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	4 cut(s)	162, 268, 506, 778
Bsh1236I	CGCG	2 cut(s)	796, 802
BsiHKAI	GWGCWC	2 cut(s)	685, 916
BsiSI	CCGG	3 cut(s)	417, 781, 923
BslFI	GGGAC	2 cut(s)	87, 620
BslI	CCNNNNNNNGG	3 cut(s)	473, 677, 704
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	87, 620
Bsp1286I	GDGCHC	2 cut(s)	685, 916
Bsp13I	TCCGGA	1 cut(s)	922
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	20
Bsp19I	CCATGG	1 cut(s)	207
Bsp68I	TCGCGA	1 cut(s)	802
BspACI	CCGC	2 cut(s)	599, 917
BspCNI	CTCAG	2 cut(s)	159, 718
BspEI	TCCGGA	1 cut(s)	922
BspFNI	CGCG	2 cut(s)	796, 802
BspLI	GGNNCC	1 cut(s)	927
BspMAI	CTGCAG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	659
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	240, 837, 909
BssECI	CCNNGG	2 cut(s)	207, 704
BssMI	GATC	1 cut(s)	20
BssNAI	GTATAC	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	207
Bst1107I	GTATAC	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	5 cut(s)	60, 95, 304, 501, 748
BstAUI	TGTACA	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	3 cut(s)	268, 804, 816
BstDEI	CTNAG	3 cut(s)	146, 726, 875
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	112, 525, 547
BstFNI	CGCG	2 cut(s)	796, 802
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 925
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	580
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	703, 780
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	2 cut(s)	796, 802
BstV1I	GCAGC	4 cut(s)	162, 268, 506, 778
BstV2I	GAAGAC	2 cut(s)	305, 749
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	574
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	651
BtgI	CCRYGG	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	851
BtsCI	GGATG	3 cut(s)	112, 525, 547
BtsIMutI	CAGTG	3 cut(s)	233, 521, 916
BtuMI	TCGCGA	1 cut(s)	802
Cac8I	GCNNGC	3 cut(s)	268, 804, 816
CfoI	GCGC	1 cut(s)	796
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	91, 113, 526, 934
CspCI	CAANNNNNGTGG	2 cut(s)	497, 532
CviAII	CATG	3 cut(s)	154, 208, 577
CviQI	GTAC	4 cut(s)	91, 113, 526, 934
DdeI	CTNAG	3 cut(s)	146, 726, 875
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	450, 456
Eco81I	CCTNAGG	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	3 cut(s)	157, 211, 580
FaqI	GGGAC	2 cut(s)	87, 620
FatI	CATG	3 cut(s)	153, 207, 576
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	151, 257, 495, 792
FokI	GGATG	3 cut(s)	119, 532, 534
Fsp4HI	GCNGC	4 cut(s)	151, 257, 495, 792
FspBI	CTAG	2 cut(s)	282, 893
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	4 cut(s)	151, 257, 495, 792
GsuI	CTGGAG	3 cut(s)	639, 854, 875
HapII	CCGG	3 cut(s)	417, 781, 923
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	3 cut(s)	157, 211, 580
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HinfI	GANTC	2 cut(s)	118, 785
HpaII	CCGG	3 cut(s)	417, 781, 923
HphI	GGTGA	2 cut(s)	140, 660
Hpy166II	GTNNAC	2 cut(s)	574, 914
Hpy188I	TCNGA	5 cut(s)	204, 448, 691, 945, 968
Hpy188III	TCNNGA	5 cut(s)	362, 644, 801, 854, 923
Hpy8I	GTNNAC	2 cut(s)	574, 914
HpyAV	CCTTC	5 cut(s)	218, 675, 750, 880, 892
HpyCH4III	ACNGT	5 cut(s)	60, 95, 304, 501, 748
HpyCH4IV	ACGT	2 cut(s)	609, 850
HpyCH4V	TGCA	6 cut(s)	48, 256, 287, 523, 607, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 925
HpyF3I	CTNAG	3 cut(s)	146, 726, 875
HpySE526I	ACGT	2 cut(s)	609, 850
Hsp92II	CATG	3 cut(s)	157, 211, 580
HspAI	GCGC	1 cut(s)	794
Kpn2I	TCCGGA	1 cut(s)	922
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	4 cut(s)	620, 889, 925, 964
Lsp1109I	GCAGC	4 cut(s)	162, 268, 506, 778
LweI	GCATC	4 cut(s)	449, 472, 510, 556
MaeI	CTAG	2 cut(s)	282, 893
MaeII	ACGT	2 cut(s)	609, 850
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	5 cut(s)	310, 356, 359, 435, 754
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	685, 916
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	9 cut(s)	103, 304, 391, 477, 702, 721, 850, 853, 930
MroI	TCCGGA	1 cut(s)	922
MseI	TTAA	2 cut(s)	278, 674
MspI	CCGG	3 cut(s)	417, 781, 923
MspR9I	CCNGG	2 cut(s)	705, 782
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	2 cut(s)	796, 802
MwoI	GCNNNNNNNGC	2 cut(s)	491, 925
NciI	CCSGG	1 cut(s)	782
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	157, 211, 580
NlaIV	GGNNCC	1 cut(s)	927
NmuCI	GTSAC	1 cut(s)	128
NruI	TCGCGA	1 cut(s)	802
NspI	RCATGY	1 cut(s)	580
PfeI	GAWTC	2 cut(s)	118, 785
PkrI	GCNGC	4 cut(s)	152, 258, 496, 793
Ppu21I	YACGTR	1 cut(s)	610
PshAI	GACNNNNGTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	1 cut(s)	927
PspPI	GGNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	20
RruI	TCGCGA	1 cut(s)	802
RsaI	GTAC	4 cut(s)	92, 114, 527, 935
RsaNI	GTAC	4 cut(s)	91, 113, 526, 934
SaqAI	TTAA	2 cut(s)	278, 674
SatI	GCNGC	4 cut(s)	151, 257, 495, 792
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	464
ScaI	AGTACT	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	705, 782
SduI	GDGCHC	2 cut(s)	685, 916
SfaNI	GCATC	4 cut(s)	449, 472, 510, 556
SfcI	CTRYAG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	24, 360
SmoI	CTYRAG	2 cut(s)	24, 360
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	599, 917
SspMI	CTAG	2 cut(s)	282, 893
StyD4I	CCNGG	2 cut(s)	703, 780
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	5 cut(s)	60, 95, 304, 501, 748
TaiI	ACGT	2 cut(s)	612, 853
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	43
TatI	WGTACW	2 cut(s)	90, 525
TfiI	GAWTC	2 cut(s)	118, 785
Tru1I	TTAA	2 cut(s)	278, 674
Tru9I	TTAA	2 cut(s)	278, 674
TscAI	CASTG	3 cut(s)	240, 521, 916
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	4 cut(s)	150, 256, 494, 791
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	170, 843, 882
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	3 cut(s)	240, 521, 916
VneI	GTGCAC	1 cut(s)	912
VpaK11BI	GGWCC	1 cut(s)	464
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	2 cut(s)	282, 893
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.