Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Forward (+)

48152663 .. 48159133

Gene Structure 6471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGGATACAGACAATGGGTTCTCAAGGTGGGGCTGATGGTAATTGCAAACAGTCACAGTTCCAGCCTTTGACAAGACAAAACTCGATTTACAGTCTCACGCTTGATGAGGTACAAAATCAGTTAGGTGACATGGGGAAGCCACTCTGCAGCATGAACCTTGATGAACTTCTCAAAAGTGTATGGAGTGCTGAGGCGAACCAGACCATGGGTATGGACATTGAAGGTACTGCAATGGTCAATCAAGCTTCCCTGCAGCGTCAGGCTAGCCTGTCATTAACTAGTGCATTGAGCAAGAAGACAGTCGATGAGGTTTGGAGAGATATTCAACAAAGTAAAGATAATGAGGAAAAGAGATCACGAGAACGACAACCTACTTTGGGAGAGATGACTTTGGAGGATTTCTTGGTCAAAGCAGGAGTTGTTGCTGAAGCATCAGACAAAAAAAATGCTGGTGGTCCTCTTGTTGGTGTTGATCCAAATGTCGCATCGCAGTTTCCACAAGGTCAATGGCTGCAGTACCCACAACCACAATATCAGCATCCACAGCAAAGTATGATGGGGGTATATATGCCAAATCAGCCTATACCACCTCCAATGCACGTAGGGGCTGGTGCTGTAATGGATGTGCCTTACCCTGATAACCAGCTTGCAATGCCTTCACCATTAATGGGTACATTATCAGATACACAGACACCTGGCAGGAAAAGGGGCAACCCAGAGGACATAGTTGAGAAGACTGTTGAGAGGAGGCAGAAGAGAATGATAAAGAACCGGGAATCTGCTGCTCGTTCACGTGCAAGGAAGCAGACAGAGTTGCAACAGGCCTATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAGGAGGAAAATGAAAGGCTAAGGAAGCAAAAGGGGTTGGATTCAAATGTAGTTGCCCCAGCAAAACCATCCACCATCTCCTATACCTATTTAGAAAAGATTTTAACGATAGATGAACCATCAAACACACTTACTGCGTGTTTTAAGGAGCTAGAGAAGGTGTTGCCTAGTGCACCACCTCCTGAGCCAAAGTATCAGCTTCGCAGAACAACATCAGCTCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

363

Amino Acids

40.42

Weight (kDa)

6.28

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	247 - 298	8e-06	Basic region leucine zipper
bZIP_1	PF00170	250 - 298	3.9e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AclWI	GGATC	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	450
AcvI	CACGTG	1 cut(s)	797
AfaI	GTAC	4 cut(s)	114, 229, 521, 676
AfiI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 671
AgsI	TTSAA	3 cut(s)	224, 329, 909
AhlI	ACTAGT	1 cut(s)	281
AjiI	CACGTC	1 cut(s)	860
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	5 cut(s)	248, 649, 1015, 1063, 1082
AluI	AGCT	5 cut(s)	248, 649, 1015, 1063, 1082
Alw21I	GWGCWC	1 cut(s)	1039
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	1035
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	1 cut(s)	825
ApaLI	GTGCAC	1 cut(s)	1035
ApeKI	GCWGC	4 cut(s)	150, 256, 514, 785
AseI	ATTAAT	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	140, 654
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	1039
BauI	CACGAG	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	797
BbsI	GAAGAC	2 cut(s)	305, 743
Bbv12I	GWGCWC	1 cut(s)	1039
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	162, 268, 501, 772
BccI	CCATC	5 cut(s)	32, 553, 940, 947, 991
BciT130I	CCWGG	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	4 cut(s)	267, 282, 1016, 1032
BfmI	CTRYAG	3 cut(s)	148, 254, 515
BisI	GCNGC	4 cut(s)	151, 257, 515, 786
BlsI	GCNGC	4 cut(s)	152, 258, 516, 787
Bme1390I	CCNGG	2 cut(s)	699, 776
Bme18I	GGWCC	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	860
BmgT120I	GGNCC	1 cut(s)	458
BmrFI	CCNGG	2 cut(s)	699, 776
BmsI	GCATC	3 cut(s)	443, 497, 550
BmtI	GCTAGC	1 cut(s)	270
BpiI	GAAGAC	2 cut(s)	305, 743
BpmI	CTGGAG	2 cut(s)	863, 884
Bpu10I	CCTNAGC	3 cut(s)	192, 884, 1047
BpuEI	CTTGAG	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	776
BsaAI	YACGTR	2 cut(s)	604, 797
BsaJI	CCNNGG	1 cut(s)	207
BsaXI	ACNNNNNCTCC	1 cut(s)	1066
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 671
Bse1I	ACTGG	1 cut(s)	846
Bse3DI	GCAATG	2 cut(s)	240, 660
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	3 cut(s)	541, 631, 932
BseLI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 671
BseMI	GCAATG	2 cut(s)	240, 660
BseMII	CTCAG	2 cut(s)	183, 1038
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	2 cut(s)	763, 881
BseSI	GKGCMC	1 cut(s)	1039
BseXI	GCAGC	4 cut(s)	162, 268, 501, 772
BseYI	CCCAGC	1 cut(s)	922
BshFI	GGCC	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	1039
BsiSI	CCGG	1 cut(s)	775
BslI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 671
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	1039
Bsp143I	GATC	2 cut(s)	356, 475
Bsp19I	CCATGG	1 cut(s)	207
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	2 cut(s)	184, 1039
BspMAI	CTGCAG	3 cut(s)	152, 258, 519
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	240, 660
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	356, 475
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	5 cut(s)	54, 60, 95, 304, 742
Bst6I	CTCTTC	1 cut(s)	752
BstBAI	YACGTR	2 cut(s)	604, 797
BstC8I	GCNNGC	2 cut(s)	268, 651
BstDEI	CTNAG	3 cut(s)	192, 884, 1047
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	3 cut(s)	541, 631, 932
BstKTI	GATC	2 cut(s)	359, 478
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	356, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	547, 580, 655, 889
BstNI	CCWGG	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	697, 774
BstSFI	CTRYAG	3 cut(s)	148, 254, 515
BstSLI	GKGCMC	1 cut(s)	1039
BstV1I	GCAGC	4 cut(s)	162, 268, 501, 772
BstV2I	GAAGAC	2 cut(s)	305, 743
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	860
BtsCI	GGATG	3 cut(s)	541, 631, 932
Cac8I	GCNNGC	2 cut(s)	268, 651
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	113, 228, 520, 675
CviAII	CATG	3 cut(s)	133, 154, 208
CviQI	GTAC	4 cut(s)	113, 228, 520, 675
DdeI	CTNAG	3 cut(s)	192, 884, 1047
DpnI	GATC	2 cut(s)	358, 477
DpnII	GATC	2 cut(s)	356, 475
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	827
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	450
Eco72I	CACGTG	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	3 cut(s)	136, 157, 211
FatI	CATG	3 cut(s)	132, 153, 207
Fnu4HI	GCNGC	4 cut(s)	151, 257, 515, 786
FokI	GGATG	3 cut(s)	528, 638, 919
Fsp4HI	GCNGC	4 cut(s)	151, 257, 515, 786
FspBI	CTAG	4 cut(s)	267, 282, 1016, 1032
GluI	GCNGC	4 cut(s)	151, 257, 515, 786
GsaI	CCCAGC	1 cut(s)	926
GsuI	CTGGAG	2 cut(s)	863, 884
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	1 cut(s)	775
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	136, 157, 211
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	779, 905
HpaII	CCGG	1 cut(s)	775
HphI	GGTGA	2 cut(s)	140, 654
Hpy166II	GTNNAC	2 cut(s)	794, 1037
Hpy188I	TCNGA	3 cut(s)	439, 685, 1091
Hpy188III	TCNNGA	3 cut(s)	360, 863, 1046
Hpy8I	GTNNAC	2 cut(s)	794, 1037
HpyAV	CCTTC	3 cut(s)	218, 669, 1015
HpyCH4III	ACNGT	5 cut(s)	54, 60, 95, 304, 742
HpyCH4IV	ACGT	3 cut(s)	603, 796, 859
HpyF10VI	GCNNNNNNNGC	4 cut(s)	547, 580, 655, 889
HpyF3I	CTNAG	3 cut(s)	192, 884, 1047
HpySE526I	ACGT	3 cut(s)	603, 796, 859
Hsp92II	CATG	3 cut(s)	136, 157, 211
Kzo9I	GATC	2 cut(s)	356, 475
LmnI	GCTCC	2 cut(s)	1012, 1087
Lsp1109I	GCAGC	4 cut(s)	162, 268, 501, 772
LweI	GCATC	3 cut(s)	443, 497, 550
MaeI	CTAG	4 cut(s)	267, 282, 1016, 1032
MaeII	ACGT	3 cut(s)	603, 796, 859
MaeIII	GTNAC	2 cut(s)	54, 128
MalI	GATC	2 cut(s)	358, 477
MboI	GATC	2 cut(s)	356, 475
MboII	GAAGA	3 cut(s)	310, 748, 769
MhlI	GDGCHC	1 cut(s)	1039
MluCI	AATT	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	882
MseI	TTAA	4 cut(s)	278, 668, 968, 1008
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	1 cut(s)	775
MspR9I	CCNGG	2 cut(s)	699, 776
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	547, 580, 655, 889
NciI	CCSGG	1 cut(s)	776
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	356, 475
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	136, 157, 211
NmuCI	GTSAC	2 cut(s)	54, 128
PceI	AGGCCT	1 cut(s)	827
PfeI	GAWTC	2 cut(s)	779, 905
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	152, 258, 516, 787
PmaCI	CACGTG	1 cut(s)	797
PmlI	CACGTG	1 cut(s)	797
Ppu21I	YACGTR	2 cut(s)	604, 797
PshBI	ATTAAT	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	697
PspCI	CACGTG	1 cut(s)	797
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	1 cut(s)	697
PspPI	GGNCC	1 cut(s)	458
PstI	CTGCAG	3 cut(s)	152, 258, 519
RsaI	GTAC	4 cut(s)	114, 229, 521, 676
RsaNI	GTAC	4 cut(s)	113, 228, 520, 675
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	4 cut(s)	278, 668, 968, 1008
SatI	GCNGC	4 cut(s)	151, 257, 515, 786
Sau3AI	GATC	2 cut(s)	356, 475
Sau96I	GGNCC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	699, 776
SduI	GDGCHC	1 cut(s)	1039
SfaNI	GCATC	3 cut(s)	443, 497, 550
SfcI	CTRYAG	3 cut(s)	148, 254, 515
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	1 cut(s)	43
SseBI	AGGCCT	1 cut(s)	827
SspMI	CTAG	4 cut(s)	267, 282, 1016, 1032
StuI	AGGCCT	1 cut(s)	827
StyD4I	CCNGG	2 cut(s)	697, 774
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	5 cut(s)	54, 60, 95, 304, 742
TaiI	ACGT	3 cut(s)	606, 799, 862
TaqI	TCGA	2 cut(s)	86, 306
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	779, 905
Tru1I	TTAA	4 cut(s)	278, 668, 968, 1008
Tru9I	TTAA	4 cut(s)	278, 668, 968, 1008
TseFI	GTSAC	2 cut(s)	54, 128
TseI	GCWGC	4 cut(s)	150, 256, 514, 785
Tsp45I	GTSAC	2 cut(s)	54, 128
TspDTI	ATGAA	5 cut(s)	170, 180, 852, 891, 993
Van91I	CCANNNNNTGG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	1035
VpaK11BI	GGWCC	1 cut(s)	458
VspI	ATTAAT	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	4 cut(s)	267, 282, 1016, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.