Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Reverse (-)

5272146 .. 5278379

Gene Structure 6234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04850.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCTCAAGGTGGGGCTGATGGTAATTGCAAACAGTCACAGTTCCAGCCTCTGACAAGACAAAACTCGATTTACAATCTCACACTTGATGAGGTACAAAATCAGTTAGGTGACTTGGGGAAGCCACTCAGCAGCATGAACCTTGATGAACTTCTCAAAAGTGTATGGAGCGCTGAGGCGAACCAGACCATGGGTATGGATATTGAAGGTACTGCAATGGTCAATCAAGCTTCCCTGCAGCGTCAGGCTAGCCTGTCATTAACTAGTGCACTGAGCAAGAAAACAGTTGATGAGGTTTGGAGAGATATTCAACAAAGTAAAGATAATGAGGAAAAGAGATCTCGAGAACGTCAACCTACTTTGGGAGAGATGACTTTGGAGGATTTCTTGGTCAAAGCAGGAGTTGTTGCTGAAGCATCAGACAAAAAAAATACTGGTGGTCCTCTTGTTGGCGTTGATGCAAATGTAGCATCACAGTTCCCACAAAGTCAGTGGCTGCAGTACCCACACCCACAATATCAGCATCCGCAGCAAAGTATGATGGGGGTATATATACCAAGTCAGCCTATACCACCTCCGATGCATGTAGGGGCTGGTGCTGTAATGGATGTTCCTTACTCTGATAACCAGCTTGCGATGCCTTCACCATTAATGGGTACATTATCAGATACACAGACTCCTGGGAGGAAAAGGGGCAACCCGGAGGACATAGTAGAGAAGACTGTTGAGAGGAGGCAGAAGAGAATGATAAAAAATCGGGAATCTGCTGCTCGTTCACGTGCAAGGAAGCAGGCTTATACAACTGAACTGGAGATCAAAGTTTCACGTCTGGAGGAGGAAAATGAAAGGCTAAGGAAGCAAAAGGAGCTAGAGAAGGTGTTGCCAAGTGCACCACCTCCTGAGCCAAAGTATCAGCTTCGCAGAACCACATCAGCTCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

316

Amino Acids

35.17

Weight (kDa)

7.76

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	242 - 288	7.1e-11	Basic region leucine zipper
bZIP_1	PF00170	245 - 292	4.6e-14	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AciI	CCGC	1 cut(s)	530
AcuI	CTGAAG	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	782
AfaI	GTAC	4 cut(s)	99, 214, 506, 661
AfeI	AGCGCT	1 cut(s)	175
AfiI	CCNNNNNNNGG	4 cut(s)	193, 365, 452, 656
AgsI	TTSAA	2 cut(s)	209, 314
AhlI	ACTAGT	1 cut(s)	266
AjiI	CACGTC	1 cut(s)	830
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	5 cut(s)	233, 634, 871, 919, 938
AluI	AGCT	5 cut(s)	233, 634, 871, 919, 938
Alw21I	GWGCWC	2 cut(s)	274, 895
Alw44I	GTGCAC	2 cut(s)	270, 891
AlwNI	CAGNNNCTG	2 cut(s)	55, 499
Ama87I	CYCGRG	1 cut(s)	345
Aor51HI	AGCGCT	1 cut(s)	175
ApaLI	GTGCAC	2 cut(s)	270, 891
ApeKI	GCWGC	5 cut(s)	135, 241, 499, 532, 770
AseI	ATTAAT	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	2 cut(s)	125, 639
AsuNHI	GCTAGC	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	2 cut(s)	274, 895
BbrPI	CACGTG	1 cut(s)	782
BbsI	GAAGAC	1 cut(s)	728
Bbv12I	GWGCWC	2 cut(s)	274, 895
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	5 cut(s)	147, 253, 486, 544, 757
BccI	CCATC	2 cut(s)	17, 538
BciT130I	CCWGG	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	704
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	3 cut(s)	252, 267, 872
BfmI	CTRYAG	2 cut(s)	239, 500
BfoI	RGCGCY	1 cut(s)	177
BglII	AGATCT	1 cut(s)	341
BisI	GCNGC	5 cut(s)	136, 242, 500, 533, 771
BlsI	GCNGC	5 cut(s)	137, 243, 501, 534, 772
Bme1390I	CCNGG	2 cut(s)	684, 704
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	345
BmgBI	CACGTC	1 cut(s)	830
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	2 cut(s)	684, 704
BmsI	GCATC	6 cut(s)	428, 451, 482, 535, 573, 630
BmtI	GCTAGC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	728
BpmI	CTGGAG	2 cut(s)	833, 854
Bpu10I	CCTNAGC	3 cut(s)	177, 854, 903
BpuMI	CCSGG	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	782
BsaJI	CCNNGG	2 cut(s)	192, 683
BsaXI	ACNNNNNCTCC	3 cut(s)	664, 694, 922
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 365, 452, 656
Bse1I	ACTGG	2 cut(s)	442, 816
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	192, 683
BseGI	GGATG	2 cut(s)	526, 616
BseLI	CCNNNNNNNGG	4 cut(s)	193, 365, 452, 656
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	4 cut(s)	145, 168, 266, 894
BseNI	ACTGG	2 cut(s)	442, 816
BseRI	GAGGAG	2 cut(s)	748, 851
BseSI	GKGCMC	2 cut(s)	274, 895
BseXI	GCAGC	5 cut(s)	147, 253, 486, 544, 757
BsiHKAI	GWGCWC	2 cut(s)	274, 895
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	704
BslI	CCNNNNNNNGG	4 cut(s)	193, 365, 452, 656
BsoBI	CYCGRG	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	274, 895
Bsp143I	GATC	2 cut(s)	341, 816
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	530
BspCNI	CTCAG	4 cut(s)	144, 169, 267, 895
BspMAI	CTGCAG	2 cut(s)	243, 504
BspOI	GCTAGC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	442, 816
BssECI	CCNNGG	2 cut(s)	192, 683
BssMI	GATC	2 cut(s)	341, 816
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	5 cut(s)	39, 45, 289, 480, 727
Bst6I	CTCTTC	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	253, 636, 795
BstDEI	CTNAG	5 cut(s)	131, 177, 275, 854, 903
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	526, 616
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	344, 819
BstMBI	GATC	2 cut(s)	341, 816
BstMWI	GCNNNNNNNGC	5 cut(s)	470, 532, 640, 859, 868
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	682, 702
BstSFI	CTRYAG	2 cut(s)	239, 500
BstSLI	GKGCMC	2 cut(s)	274, 895
BstV1I	GCAGC	5 cut(s)	147, 253, 486, 544, 757
BstV2I	GAAGAC	1 cut(s)	728
BstX2I	RGATCY	1 cut(s)	341
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	653
BtrI	CACGTC	1 cut(s)	830
BtsCI	GGATG	2 cut(s)	526, 616
BtsIMutI	CAGTG	2 cut(s)	272, 500
Cac8I	GCNNGC	3 cut(s)	253, 636, 795
CaiI	CAGNNNCTG	2 cut(s)	55, 499
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	443
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	4 cut(s)	98, 213, 505, 660
CspCI	CAANNNNNGTGG	2 cut(s)	476, 511
CviAII	CATG	3 cut(s)	139, 193, 587
CviQI	GTAC	4 cut(s)	98, 213, 505, 660
DdeI	CTNAG	5 cut(s)	131, 177, 275, 854, 903
DpnI	GATC	2 cut(s)	343, 818
DpnII	GATC	2 cut(s)	341, 816
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	443
Eco47III	AGCGCT	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	435
Eco72I	CACGTG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	142, 196, 590
FatI	CATG	3 cut(s)	138, 192, 586
Fnu4HI	GCNGC	5 cut(s)	136, 242, 500, 533, 771
FokI	GGATG	2 cut(s)	513, 623
Fsp4HI	GCNGC	5 cut(s)	136, 242, 500, 533, 771
FspBI	CTAG	3 cut(s)	252, 267, 872
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	5 cut(s)	136, 242, 500, 533, 771
GsuI	CTGGAG	2 cut(s)	833, 854
HaeII	RGCGCY	1 cut(s)	177
HapII	CCGG	1 cut(s)	704
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	142, 196, 590
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	2 cut(s)	679, 764
HpaII	CCGG	1 cut(s)	704
HphI	GGTGA	2 cut(s)	125, 639
Hpy166II	GTNNAC	4 cut(s)	272, 356, 779, 893
Hpy188I	TCNGA	6 cut(s)	57, 424, 582, 625, 670, 947
Hpy188III	TCNNGA	5 cut(s)	345, 347, 761, 833, 902
Hpy8I	GTNNAC	4 cut(s)	272, 356, 779, 893
HpyAV	CCTTC	3 cut(s)	203, 654, 871
HpyCH4III	ACNGT	5 cut(s)	39, 45, 289, 480, 727
HpyCH4IV	ACGT	3 cut(s)	352, 781, 829
HpyCH4V	TGCA	9 cut(s)	33, 218, 241, 272, 464, 502, 586, 785, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	470, 532, 640, 859, 868
HpyF3I	CTNAG	5 cut(s)	131, 177, 275, 854, 903
HpySE526I	ACGT	3 cut(s)	352, 781, 829
Hsp92II	CATG	3 cut(s)	142, 196, 590
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	341, 816
LmnI	GCTCC	3 cut(s)	171, 868, 943
Lsp1109I	GCAGC	5 cut(s)	147, 253, 486, 544, 757
LweI	GCATC	6 cut(s)	428, 451, 482, 535, 573, 630
MaeI	CTAG	3 cut(s)	252, 267, 872
MaeII	ACGT	3 cut(s)	352, 781, 829
MaeIII	GTNAC	2 cut(s)	39, 113
MalI	GATC	2 cut(s)	343, 818
MboI	GATC	2 cut(s)	341, 816
MboII	GAAGA	2 cut(s)	733, 754
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	2 cut(s)	274, 895
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	673
Mph1103I	ATGCAT	1 cut(s)	588
MseI	TTAA	2 cut(s)	263, 653
MslI	CAYNNNNRTG	1 cut(s)	197
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	2 cut(s)	684, 704
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	5 cut(s)	470, 532, 640, 859, 868
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	341, 816
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	3 cut(s)	142, 196, 590
NmuCI	GTSAC	2 cut(s)	39, 113
NsiI	ATGCAT	1 cut(s)	588
NspI	RCATGY	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	764
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	5 cut(s)	137, 243, 501, 534, 772
PleI	GAGTC	1 cut(s)	673
PmaCI	CACGTG	1 cut(s)	782
PmlI	CACGTG	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	673
Ppu21I	YACGTR	1 cut(s)	782
PshBI	ATTAAT	1 cut(s)	653
Psp6I	CCWGG	1 cut(s)	682
PspCI	CACGTG	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	682
PspPI	GGNCC	1 cut(s)	443
PsrI	GAACNNNNNNTAC	2 cut(s)	597, 629
PstI	CTGCAG	2 cut(s)	243, 504
PstNI	CAGNNNCTG	2 cut(s)	55, 499
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	4 cut(s)	99, 214, 506, 661
RsaNI	GTAC	4 cut(s)	98, 213, 505, 660
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	263, 653
SatI	GCNGC	5 cut(s)	136, 242, 500, 533, 771
Sau3AI	GATC	2 cut(s)	341, 816
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	1 cut(s)	673
ScrFI	CCNGG	2 cut(s)	684, 704
SduI	GDGCHC	2 cut(s)	274, 895
SfaNI	GCATC	6 cut(s)	428, 451, 482, 535, 573, 630
SfcI	CTRYAG	2 cut(s)	239, 500
Sfr274I	CTCGAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	9, 345
SmoI	CTYRAG	2 cut(s)	9, 345
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	3 cut(s)	252, 267, 872
StyD4I	CCNGG	2 cut(s)	682, 702
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	5 cut(s)	39, 45, 289, 480, 727
TaiI	ACGT	3 cut(s)	355, 784, 832
TaqI	TCGA	2 cut(s)	71, 346
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	2 cut(s)	263, 653
Tru9I	TTAA	2 cut(s)	263, 653
TscAI	CASTG	2 cut(s)	279, 500
TseFI	GTSAC	2 cut(s)	39, 113
TseI	GCWGC	5 cut(s)	135, 241, 499, 532, 770
Tsp45I	GTSAC	2 cut(s)	39, 113
TspDTI	ATGAA	3 cut(s)	155, 165, 861
TspRI	CASTG	2 cut(s)	279, 500
Van91I	CCANNNNNTGG	1 cut(s)	193
VneI	GTGCAC	2 cut(s)	270, 891
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	653
XceI	RCATGY	1 cut(s)	590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
XhoI	CTCGAG	1 cut(s)	345
XspI	CTAG	3 cut(s)	252, 267, 872
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.