Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Reverse (-)

3506215 .. 3509072

Gene Structure 2858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTATAGTCTCACATTGGATGAGGTACAGAATCAGTTAGGTGACTTGGGGAAGCCACTCAGCAGCATGAACCTTGACGAGCTTCTAAAAAATGTATGGAGTGTGGAAGCAAATCAGACCATGGGCATAGACATTGAAGGCACGACACTGGTCAATCAAGCTCAACTGCAGCGTCAGGCAAGCCTGTCATTAACTAGTGCATTGAGCAAGAAGACAGTCGATGAGGTTTGGAGAGATATTCAACAAAGCAAAGATGAAGAAGAAAAGAAATCTCAAGAAAGACAACGGACTTTGGGAGAGATGACTTTGGAGGATTTCTTGGTCAAGGCCGGAGTTGTTGCTGAAGCCGAAGCATCTTCGGACAAACAGTGTGCTGGTCCTCTTGTTGGGGTTGATGCGAATATGGCAGCACAGTTTCCACAAGGTCCGTGGATGCAGTACTCACAACCACAATATCAGCATCCACAACAAAGTATGATGGGGGTATACATGCCAAGCCAACCTATACCACCGCCAATGCACGTAGGGGCTGGAGCTATGATGGAAGTCCCGTATCCTGACAACCAAGTTCCATTGCCTTCACCCTTAATGGGTGCTCTATCAGATACGCAGACACCTGGGAGGAAAAGAGGCAACTCTGAGGACATTGTTGAGAAGACTGTTGAGCGAAGGCAAAAGAGAATGATAAAGAACCGGGAATCTGCTGCCCGTTCACGAGCAAGGAAGCAGGCGTATACAAATGAACTGGAGAACAAAGTTTCACGCCTGGAGGAGGAAAATGAAAGGCTAAGGAAACAGAAGGAGCTAGAGAAGGTGTTGCCGAGTGCACCGCCTCCGGAGCCAAAGTACCAGCTTCGTAGAACATCATCAGCTCCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

294

Amino Acids

32.89

Weight (kDa)

5.7

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	486, 734
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	2 cut(s)	512, 830
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	3 cut(s)	27, 440, 848
AfiI	CCNNNNNNNGG	3 cut(s)	386, 590, 772
AgsI	TTSAA	2 cut(s)	137, 242
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	616, 765
AluBI	AGCT	6 cut(s)	82, 161, 536, 805, 853, 872
AluI	AGCT	6 cut(s)	82, 161, 536, 805, 853, 872
Alw21I	GWGCWC	2 cut(s)	598, 829
Alw26I	GTCTC	1 cut(s)	14
Alw44I	GTGCAC	1 cut(s)	825
Aor13HI	TCCGGA	1 cut(s)	835
AoxI	GGCC	1 cut(s)	327
ApaLI	GTGCAC	1 cut(s)	825
ApeKI	GCWGC	4 cut(s)	63, 169, 407, 704
AspS9I	GGNCC	2 cut(s)	377, 425
AsuC2I	CCSGG	1 cut(s)	695
AsuHPI	GGTGA	2 cut(s)	53, 573
AvaII	GGWCC	2 cut(s)	377, 425
BaeGI	GKGCMC	1 cut(s)	829
BauI	CACGAG	1 cut(s)	714
BbsI	GAAGAC	2 cut(s)	218, 662
Bbv12I	GWGCWC	2 cut(s)	598, 829
BbvI	GCAGC	4 cut(s)	75, 181, 419, 691
BccI	CCATC	2 cut(s)	472, 535
BciT130I	CCWGG	2 cut(s)	618, 767
BciVI	GTATCC	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	695
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	2 cut(s)	195, 806
BfmI	CTRYAG	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	4 cut(s)	64, 170, 408, 705
BlsI	GCNGC	4 cut(s)	65, 171, 409, 706
BmcAI	AGTACT	1 cut(s)	440
Bme1390I	CCNGG	3 cut(s)	618, 695, 767
Bme18I	GGWCC	2 cut(s)	377, 425
BmgT120I	GGNCC	2 cut(s)	377, 425
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	3 cut(s)	618, 695, 767
BmsI	GCATC	4 cut(s)	362, 385, 423, 469
BoxI	GACNNNNGTC	1 cut(s)	149
BpiI	GAAGAC	2 cut(s)	218, 662
BpmI	CTGGAG	3 cut(s)	552, 767, 788
Bpu10I	CCTNAGC	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	695
BsaAI	YACGTR	1 cut(s)	523
BsaJI	CCNNGG	3 cut(s)	120, 428, 617
BsaWI	WCCGGW	1 cut(s)	835
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 590, 772
Bse1I	ACTGG	2 cut(s)	153, 750
Bse3DI	GCAATG	1 cut(s)	572
BseAI	TCCGGA	1 cut(s)	835
BseBI	CCWGG	2 cut(s)	618, 767
BseDI	CCNNGG	3 cut(s)	120, 428, 617
BseGI	GGATG	3 cut(s)	25, 438, 460
BseLI	CCNNNNNNNGG	3 cut(s)	386, 590, 772
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	2 cut(s)	73, 630
BseNI	ACTGG	2 cut(s)	153, 750
BseRI	GAGGAG	1 cut(s)	785
BseSI	GKGCMC	1 cut(s)	829
BseXI	GCAGC	4 cut(s)	75, 181, 419, 691
BshFI	GGCC	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	598, 829
BsiSI	CCGG	3 cut(s)	330, 694, 836
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	386, 590, 772
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	598, 829
Bsp13I	TCCGGA	1 cut(s)	835
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	512, 830
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	72, 631
BspEI	TCCGGA	1 cut(s)	835
BspLI	GGNNCC	1 cut(s)	840
BspMAI	CTGCAG	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	153, 750
BssECI	CCNNGG	3 cut(s)	120, 428, 617
BssNAI	GTATAC	2 cut(s)	487, 735
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	120
Bst1107I	GTATAC	2 cut(s)	487, 735
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	618, 767
Bst4CI	ACNGT	4 cut(s)	217, 369, 414, 661
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	181, 729
BstDEI	CTNAG	3 cut(s)	59, 639, 788
BstDSI	CCRYGG	2 cut(s)	120, 428
BstENI	CCTNNNNNAGG	1 cut(s)	770
BstF5I	GGATG	3 cut(s)	25, 438, 460
BstMAI	GTCTC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 838
BstNI	CCWGG	2 cut(s)	618, 767
BstNSI	RCATGY	1 cut(s)	493
BstPAI	GACNNNNGTC	1 cut(s)	149
BstSCI	CCNGG	3 cut(s)	616, 693, 765
BstSFI	CTRYAG	1 cut(s)	167
BstSLI	GKGCMC	1 cut(s)	829
BstV1I	GCAGC	4 cut(s)	75, 181, 419, 691
BstV2I	GAAGAC	2 cut(s)	218, 662
BstZ17I	GTATAC	2 cut(s)	487, 735
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	2 cut(s)	120, 428
BtsCI	GGATG	3 cut(s)	25, 438, 460
BtsIMutI	CAGTG	2 cut(s)	146, 374
Cac8I	GCNNGC	2 cut(s)	181, 729
Cfr13I	GGNCC	2 cut(s)	377, 425
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	26, 439, 847
CspCI	CAANNNNNGTGG	2 cut(s)	410, 445
CviAII	CATG	3 cut(s)	67, 121, 490
CviQI	GTAC	3 cut(s)	26, 439, 847
DdeI	CTNAG	3 cut(s)	59, 639, 788
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	377, 425
Eco57I	CTGAAG	1 cut(s)	363
EcoNI	CCTNNNNNAGG	1 cut(s)	770
EcoRII	CCWGG	2 cut(s)	616, 765
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	3 cut(s)	70, 124, 493
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	3 cut(s)	66, 120, 489
FblI	GTMKAC	2 cut(s)	486, 734
Fnu4HI	GCNGC	4 cut(s)	64, 170, 408, 705
FokI	GGATG	3 cut(s)	32, 445, 447
Fsp4HI	GCNGC	4 cut(s)	64, 170, 408, 705
FspBI	CTAG	2 cut(s)	195, 806
GluI	GCNGC	4 cut(s)	64, 170, 408, 705
GsuI	CTGGAG	3 cut(s)	552, 767, 788
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	3 cut(s)	330, 694, 836
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	70, 124, 493
HinfI	GANTC	2 cut(s)	31, 698
HpaII	CCGG	3 cut(s)	330, 694, 836
HphI	GGTGA	2 cut(s)	53, 573
Hpy166II	GTNNAC	4 cut(s)	487, 713, 735, 827
Hpy188I	TCNGA	5 cut(s)	117, 361, 604, 640, 881
Hpy188III	TCNNGA	4 cut(s)	275, 557, 714, 836
Hpy8I	GTNNAC	4 cut(s)	487, 713, 735, 827
HpyAV	CCTTC	5 cut(s)	131, 588, 663, 793, 805
HpyCH4III	ACNGT	4 cut(s)	217, 369, 414, 661
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	5 cut(s)	169, 200, 436, 520, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 838
HpyF3I	CTNAG	3 cut(s)	59, 639, 788
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	3 cut(s)	70, 124, 493
Kpn2I	TCCGGA	1 cut(s)	835
LmnI	GCTCC	4 cut(s)	533, 802, 838, 877
Lsp1109I	GCAGC	4 cut(s)	75, 181, 419, 691
LweI	GCATC	4 cut(s)	362, 385, 423, 469
MaeI	CTAG	2 cut(s)	195, 806
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	41
MboII	GAAGA	5 cut(s)	223, 269, 272, 348, 667
MhlI	GDGCHC	2 cut(s)	598, 829
MroI	TCCGGA	1 cut(s)	835
MseI	TTAA	2 cut(s)	191, 587
MspI	CCGG	3 cut(s)	330, 694, 836
MspR9I	CCNGG	3 cut(s)	618, 695, 767
MvaI	CCWGG	2 cut(s)	618, 767
MwoI	GCNNNNNNNGC	2 cut(s)	404, 838
NciI	CCSGG	1 cut(s)	695
NcoI	CCATGG	1 cut(s)	120
NlaIII	CATG	3 cut(s)	70, 124, 493
NlaIV	GGNNCC	1 cut(s)	840
NmeAIII	GCCGAG	1 cut(s)	846
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	31, 698
PkrI	GCNGC	4 cut(s)	65, 171, 409, 706
Ppu21I	YACGTR	1 cut(s)	523
PshAI	GACNNNNGTC	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	616, 765
PspGI	CCWGG	2 cut(s)	616, 765
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	2 cut(s)	377, 425
PstI	CTGCAG	1 cut(s)	171
RsaI	GTAC	3 cut(s)	27, 440, 848
RsaNI	GTAC	3 cut(s)	26, 439, 847
SaqAI	TTAA	2 cut(s)	191, 587
SatI	GCNGC	4 cut(s)	64, 170, 408, 705
Sau96I	GGNCC	2 cut(s)	377, 425
ScaI	AGTACT	1 cut(s)	440
ScrFI	CCNGG	3 cut(s)	618, 695, 767
SduI	GDGCHC	2 cut(s)	598, 829
SfaNI	GCATC	4 cut(s)	362, 385, 423, 469
SfcI	CTRYAG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	377, 425
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
SpeI	ACTAGT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	512, 830
SspMI	CTAG	2 cut(s)	195, 806
StyD4I	CCNGG	3 cut(s)	616, 693, 765
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	4 cut(s)	217, 369, 414, 661
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	219
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	31, 698
Tru1I	TTAA	2 cut(s)	191, 587
Tru9I	TTAA	2 cut(s)	191, 587
TscAI	CASTG	2 cut(s)	153, 374
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	4 cut(s)	63, 169, 407, 704
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	83, 270, 756, 795
TspGWI	ACGGA	2 cut(s)	301, 417
TspRI	CASTG	2 cut(s)	153, 374
VneI	GTGCAC	1 cut(s)	825
VpaK11BI	GGWCC	2 cut(s)	377, 425
XagI	CCTNNNNNAGG	1 cut(s)	770
XceI	RCATGY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XmiI	GTMKAC	2 cut(s)	486, 734
XspI	CTAG	2 cut(s)	195, 806
ZrmI	AGTACT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.