Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Reverse (-)

21046234 .. 21048614

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATTCTCAGAGGGGTATTGTTGAACAAGCTAAATCTCAGTCCTTGAATAGGCAAAGCTCTCTTTACAGCTTAACACTTGATGAGGTTCAAAATCACTTGGGGAGTTCTGGTAAAGCTCTGGGAAGCATGAACCTTGATGAGCTTTTGAAGAGTGTCTGTTCTGTTGAAGCTAATCAGCCATCGTCTATGGCTGTCAATGGTGGAGCAGCTGCTCAGGAGGGTCTTTCTCGCCAGGGGAGTTTGACTTTGCCTCGGGATCTCAGCAAAAAGACTGTTGATGAGGTTTGGAAAGACATTCAGCAGAATAAGAATGGAGGTAGTGCTCATGAGAGGAGGGATAAGCAGCCTACACTTGGGGAAATGACGCTTGAAGACCTGTTGTTGAAAGCAGGAGTGGTCACTGAGACTATCCCTGGTTCGAACCATGATGGTCCTGTTGGTGGTGGTAGTGCTGGTTCAGGTGCTGGTTTAGGGCAAAACATTACTCAAGTTGGCCCATGGATTCAATATCATCAGCTCCCATCAATGCCACAGCCTCAAGCATTTATGCCCTATCCGGTTTCAGATATGCAAGCAATGGTGTCTCAGTCTTCTTTGATGGGTGGTTTGTCAGATACACAAACTCCTGGAAGGAAGAGGGTAGCTTCAGGAGAAGTTGTAGAGAAGACTGTAGAGAGGAGGCAGAAGAGAATGATAAAGAACAGAGAGTCTGCTGCTCGTTCCCGAGCTAGGAAACAGGCTTACACTCATGAGCTAGAGATCAAAGTTTCACGGTTAGAAGAAGAAAACGAAAGACTCAGGAAGCAAAAGGAGGTGGAAAAAATCCTCCCAAGTGTACCACCGCCTGATCCCAAGCGGCAGCTCCGACGGACAAGCTCGGCTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

297

Amino Acids

32.42

Weight (kDa)

9.36

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	224 - 270	2.4e-10	Basic region leucine zipper
bZIP_1	PF00170	227 - 270	7.2e-13	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	845, 859
AclWI	GGATC	2 cut(s)	267, 845
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	1 cut(s)	840
AfiI	CCNNNNNNNGG	4 cut(s)	51, 356, 443, 732
AgsI	TTSAA	8 cut(s)	26, 49, 92, 151, 170, 374, 388, 509
AjnI	CCWGG	3 cut(s)	234, 415, 628
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	2 cut(s)	401, 591
AlwI	GGATC	2 cut(s)	267, 845
AlwNI	CAGNNNCTG	1 cut(s)	467
Ama87I	CYCGRG	2 cut(s)	255, 726
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	5 cut(s)	209, 212, 346, 716, 862
AspS9I	GGNCC	2 cut(s)	434, 497
AsuII	TTCGAA	1 cut(s)	422
AvaI	CYCGRG	2 cut(s)	255, 726
AvaII	GGWCC	1 cut(s)	434
BbsI	GAAGAC	3 cut(s)	381, 585, 674
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	5 cut(s)	199, 221, 358, 703, 874
BccI	CCATC	4 cut(s)	190, 425, 532, 595
BciT130I	CCWGG	3 cut(s)	236, 417, 630
BcoDI	GTCTC	2 cut(s)	401, 591
BfaI	CTAG	2 cut(s)	732, 758
BfmI	CTRYAG	1 cut(s)	672
BisI	GCNGC	6 cut(s)	210, 213, 347, 717, 860, 863
BlsI	GCNGC	6 cut(s)	211, 214, 348, 718, 861, 864
Bme1390I	CCNGG	3 cut(s)	236, 417, 630
Bme18I	GGWCC	1 cut(s)	434
BmeT110I	CYCGRG	2 cut(s)	255, 726
BmgT120I	GGNCC	2 cut(s)	434, 497
BmiI	GGNNCC	1 cut(s)	885
BmrFI	CCNGG	3 cut(s)	236, 417, 630
BpiI	GAAGAC	3 cut(s)	381, 585, 674
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	422
BpuEI	CTTGAG	2 cut(s)	474, 525
BsaJI	CCNNGG	4 cut(s)	235, 254, 415, 500
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	6 cut(s)	97, 127, 610, 640, 645, 675
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 356, 443, 732
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	236, 417, 630
BseDI	CCNNGG	4 cut(s)	235, 254, 415, 500
BseLI	CCNNNNNNNGG	4 cut(s)	51, 356, 443, 732
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	7 cut(s)	23, 53, 230, 277, 396, 602, 814
BseRI	GAGGAG	2 cut(s)	349, 694
BseXI	GCAGC	5 cut(s)	199, 221, 358, 703, 874
BshFI	GGCC	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	2 cut(s)	255, 726
BsiSI	CCGG	1 cut(s)	560
BslI	CCNNNNNNNGG	4 cut(s)	51, 356, 443, 732
BsmAI	GTCTC	2 cut(s)	401, 591
BsnI	GGCC	1 cut(s)	498
BsoBI	CYCGRG	2 cut(s)	255, 726
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	259, 762, 850
Bsp19I	CCATGG	1 cut(s)	500
BspACI	CCGC	2 cut(s)	845, 859
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	7 cut(s)	22, 52, 229, 276, 397, 601, 813
BspHI	TCATGA	2 cut(s)	328, 751
BspLI	GGNNCC	1 cut(s)	885
BspPI	GGATC	2 cut(s)	267, 845
BspT104I	TTCGAA	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	585
BssECI	CCNNGG	4 cut(s)	235, 254, 415, 500
BssMI	GATC	3 cut(s)	259, 762, 850
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	3 cut(s)	236, 417, 630
Bst4CI	ACNGT	3 cut(s)	277, 673, 777
Bst6I	CTCTTC	3 cut(s)	146, 632, 683
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	7 cut(s)	9, 39, 216, 263, 405, 588, 800
BstDSI	CCRYGG	1 cut(s)	500
BstENI	CCTNNNNNAGG	1 cut(s)	49
BstKTI	GATC	3 cut(s)	262, 765, 853
BstMAI	GTCTC	2 cut(s)	401, 591
BstMBI	GATC	3 cut(s)	259, 762, 850
BstNI	CCWGG	3 cut(s)	236, 417, 630
BstSCI	CCNGG	3 cut(s)	234, 415, 628
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	5 cut(s)	199, 221, 358, 703, 874
BstV2I	GAAGAC	3 cut(s)	381, 585, 674
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	467
CciI	TCATGA	2 cut(s)	328, 751
Cfr13I	GGNCC	2 cut(s)	434, 497
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	5 cut(s)	130, 329, 428, 501, 752
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	7 cut(s)	9, 39, 216, 263, 405, 588, 800
DpnI	GATC	3 cut(s)	261, 764, 852
DpnII	GATC	3 cut(s)	259, 762, 850
Eam1104I	CTCTTC	3 cut(s)	146, 632, 683
EarI	CTCTTC	3 cut(s)	146, 632, 683
Eco130I	CCWWGG	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	2 cut(s)	255, 726
EcoNI	CCTNNNNNAGG	1 cut(s)	49
EcoRII	CCWGG	3 cut(s)	234, 415, 628
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	5 cut(s)	133, 332, 431, 504, 755
FaiI	YATR	8 cut(s)	131, 191, 330, 429, 502, 551, 572, 753
FatI	CATG	5 cut(s)	129, 328, 427, 500, 751
Fnu4HI	GCNGC	6 cut(s)	210, 213, 347, 717, 860, 863
Fsp4HI	GCNGC	6 cut(s)	210, 213, 347, 717, 860, 863
FspBI	CTAG	2 cut(s)	732, 758
GluI	GCNGC	6 cut(s)	210, 213, 347, 717, 860, 863
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	1 cut(s)	376
Hin1II	CATG	5 cut(s)	133, 332, 431, 504, 755
HinfI	GANTC	4 cut(s)	5, 505, 710, 798
HpaII	CCGG	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	839
Hpy188I	TCNGA	5 cut(s)	12, 568, 616, 869, 893
Hpy188III	TCNNGA	7 cut(s)	218, 257, 329, 651, 726, 752, 802
Hpy8I	GTNNAC	1 cut(s)	839
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	3 cut(s)	277, 673, 777
HpyCH4V	TGCA	1 cut(s)	574
HpyF3I	CTNAG	7 cut(s)	9, 39, 216, 263, 405, 588, 800
Hsp92II	CATG	5 cut(s)	133, 332, 431, 504, 755
Kzo9I	GATC	3 cut(s)	259, 762, 850
LmnI	GCTCC	4 cut(s)	206, 525, 870, 889
Lsp1109I	GCAGC	5 cut(s)	199, 221, 358, 703, 874
MaeI	CTAG	2 cut(s)	732, 758
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	3 cut(s)	261, 764, 852
MboI	GATC	3 cut(s)	259, 762, 850
MboII	GAAGA	8 cut(s)	163, 386, 585, 649, 679, 700, 794, 797
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	328
MlyI	GAGTC	2 cut(s)	719, 792
MmeI	TCCRAC	1 cut(s)	892
MseI	TTAA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	3 cut(s)	236, 417, 630
MvaI	CCWGG	3 cut(s)	236, 417, 630
NcoI	CCATGG	1 cut(s)	500
NdeII	GATC	3 cut(s)	259, 762, 850
NlaIII	CATG	5 cut(s)	133, 332, 431, 504, 755
NlaIV	GGNNCC	1 cut(s)	885
NmeAIII	GCCGAG	1 cut(s)	860
NmuCI	GTSAC	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	422
PagI	TCATGA	2 cut(s)	328, 751
PfeI	GAWTC	2 cut(s)	5, 505
PfoI	TCCNGGA	1 cut(s)	628
PkrI	GCNGC	6 cut(s)	211, 214, 348, 718, 861, 864
PleI	GAGTC	2 cut(s)	718, 792
PpsI	GAGTC	2 cut(s)	718, 792
Psp6I	CCWGG	3 cut(s)	234, 415, 628
PspGI	CCWGG	3 cut(s)	234, 415, 628
PspN4I	GGNNCC	1 cut(s)	885
PspPI	GGNCC	2 cut(s)	434, 497
PsrI	GAACNNNNNNTAC	2 cut(s)	442, 474
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	6 cut(s)	210, 213, 347, 717, 860, 863
Sau3AI	GATC	3 cut(s)	259, 762, 850
Sau96I	GGNCC	2 cut(s)	434, 497
SchI	GAGTC	2 cut(s)	719, 792
ScrFI	CCNGG	3 cut(s)	236, 417, 630
SduI	GDGCHC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	422
SinI	GGWCC	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	489, 540
SmoI	CTYRAG	2 cut(s)	489, 540
SsiI	CCGC	2 cut(s)	845, 859
SspMI	CTAG	2 cut(s)	732, 758
StyD4I	CCNGG	3 cut(s)	234, 415, 628
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	277, 673, 777
TaqI	TCGA	1 cut(s)	422
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	2 cut(s)	5, 505
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	5 cut(s)	209, 212, 346, 716, 862
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	886
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	732, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.