Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Reverse (-)

20155270 .. 20161536

Gene Structure 6267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55964

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGGATACAGACAATGGGTTCTCAAGGTGGGGCTGATGGTAATTGCAAACAGTCACAGTTCCAGCCTTTGACAAGACAAAACTCGATTTACAGTCTCACGCTTGATGAGGTACAAAATCAGTTAGGTGACTTGGGGAAGCCACTCTGCAGCATGAACCTTGATGAACTTCTCAAAAGTGTATGGAGTGCTGAGGCGAACCAGACCATGGGTATGGACATTGAAGGTACTGCAATGGTCAATCAAGCTTCCCTGCAGCGTCAGGCTAGCCTGTCATTAACTAGTGCATTGAGCAAGAAGACAGTCGATGAGGTTTGGAGAGATATTCAACAAAGTAAAGATAATGAGGAAAAGAGATCACGAGAACGACAACCTACTTTGGGAGAGATGACTTTGGAGGATTTCTTGGTCAAAGCAGGAGTTGTTGCTGAAGCATCAGACAAAAAAAATGCTGGTGGTCCTCTTGTTGGCGTTGGTCCAAATGTCGCATCGCAGTTTCCACAAGGTCAGTGGCTGCAGTACCCACAACCACAATATCAGCATCCACAGCAAAGTATGATGGGGGTATATATGCCAAATCAGCCTATACCACCTCCAATGCATGTAGGGGCTGGTGCTGTAATGGATGTGCCTTACCCTGATAACCAGCTTGCAATGCCTTCACCATTAATGGGTGCATTATCAGATACACAGACACCTGGGAGGAAAAGGGGCAACCCAGAGGACATAGTTGAGAAGACTGTTGAGAGGAGGCAGAAGAGAATGATAAAGAACCGGGAATCTGCTGCTCGTTCACGTGCAAGGAAGCAGGCTTATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAAGAGGAAAATGAAAGACTAAGGAAGCAAAAGGAGCTAGAGAAGGTGTTGCCTAGTGCACCACCTCCTGAGCCAAAGTATCAGCTTCGCAGAACAACATCAGCTCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

320

Amino Acids

35.63

Weight (kDa)

8.39

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	247 - 294	3.7e-10	Basic region leucine zipper
bZIP_1	PF00170	250 - 294	1.3e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	450
AcvI	CACGTG	1 cut(s)	797
AfaI	GTAC	3 cut(s)	114, 229, 521
AfiI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 671
AgsI	TTSAA	2 cut(s)	224, 329
AhlI	ACTAGT	1 cut(s)	281
AjiI	CACGTC	1 cut(s)	845
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	5 cut(s)	248, 649, 886, 934, 953
AluI	AGCT	5 cut(s)	248, 649, 886, 934, 953
Alw21I	GWGCWC	1 cut(s)	910
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	906
AlwNI	CAGNNNCTG	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	906
ApeKI	GCWGC	4 cut(s)	150, 256, 514, 785
AseI	ATTAAT	1 cut(s)	668
AspS9I	GGNCC	2 cut(s)	458, 476
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	140, 654
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	458, 476
BaeGI	GKGCMC	1 cut(s)	910
BauI	CACGAG	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	797
BbsI	GAAGAC	2 cut(s)	305, 743
Bbv12I	GWGCWC	1 cut(s)	910
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	162, 268, 501, 772
BccI	CCATC	2 cut(s)	32, 553
BciT130I	CCWGG	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	4 cut(s)	267, 282, 887, 903
BfmI	CTRYAG	3 cut(s)	148, 254, 515
BisI	GCNGC	4 cut(s)	151, 257, 515, 786
BlsI	GCNGC	4 cut(s)	152, 258, 516, 787
Bme1390I	CCNGG	2 cut(s)	699, 776
Bme18I	GGWCC	2 cut(s)	458, 476
BmgBI	CACGTC	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	458, 476
BmrFI	CCNGG	2 cut(s)	699, 776
BmsI	GCATC	3 cut(s)	443, 497, 550
BmtI	GCTAGC	1 cut(s)	270
BpiI	GAAGAC	2 cut(s)	305, 743
BpmI	CTGGAG	1 cut(s)	848
Bpu10I	CCTNAGC	2 cut(s)	192, 918
BpuEI	CTTGAG	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	776
BsaAI	YACGTR	1 cut(s)	797
BsaJI	CCNNGG	2 cut(s)	207, 698
BsaXI	ACNNNNNCTCC	1 cut(s)	937
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 671
Bse1I	ACTGG	1 cut(s)	831
Bse3DI	GCAATG	2 cut(s)	240, 660
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	207, 698
BseGI	GGATG	2 cut(s)	541, 631
BseLI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 671
BseMI	GCAATG	2 cut(s)	240, 660
BseMII	CTCAG	2 cut(s)	183, 909
BseNI	ACTGG	1 cut(s)	831
BseRI	GAGGAG	1 cut(s)	763
BseSI	GKGCMC	1 cut(s)	910
BseXI	GCAGC	4 cut(s)	162, 268, 501, 772
BsiHKAI	GWGCWC	1 cut(s)	910
BsiSI	CCGG	1 cut(s)	775
BslI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 671
BsmAI	GTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	910
Bsp143I	GATC	1 cut(s)	356
Bsp19I	CCATGG	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	184, 910
BspMAI	CTGCAG	3 cut(s)	152, 258, 519
BspOI	GCTAGC	1 cut(s)	270
BsrDI	GCAATG	2 cut(s)	240, 660
BsrI	ACTGG	1 cut(s)	831
BssECI	CCNNGG	2 cut(s)	207, 698
BssMI	GATC	1 cut(s)	356
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	5 cut(s)	54, 60, 95, 304, 742
Bst6I	CTCTTC	2 cut(s)	752, 846
BstBAI	YACGTR	1 cut(s)	797
BstC8I	GCNNGC	3 cut(s)	268, 651, 810
BstDEI	CTNAG	3 cut(s)	192, 869, 918
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	541, 631
BstKTI	GATC	1 cut(s)	359
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	4 cut(s)	547, 580, 655, 883
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	697, 774
BstSFI	CTRYAG	3 cut(s)	148, 254, 515
BstSLI	GKGCMC	1 cut(s)	910
BstV1I	GCAGC	4 cut(s)	162, 268, 501, 772
BstV2I	GAAGAC	2 cut(s)	305, 743
BstXI	CCANNNNNNTGG	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	845
BtsCI	GGATG	2 cut(s)	541, 631
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	3 cut(s)	268, 651, 810
CaiI	CAGNNNCTG	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	458, 476
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	113, 228, 520
CspCI	CAANNNNNGTGG	2 cut(s)	491, 526
CviAII	CATG	3 cut(s)	154, 208, 602
CviQI	GTAC	3 cut(s)	113, 228, 520
DdeI	CTNAG	3 cut(s)	192, 869, 918
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
Eam1104I	CTCTTC	2 cut(s)	752, 846
EarI	CTCTTC	2 cut(s)	752, 846
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	458, 476
Eco57I	CTGAAG	1 cut(s)	450
Eco72I	CACGTG	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	3 cut(s)	157, 211, 605
FatI	CATG	3 cut(s)	153, 207, 601
Fnu4HI	GCNGC	4 cut(s)	151, 257, 515, 786
FokI	GGATG	2 cut(s)	528, 638
Fsp4HI	GCNGC	4 cut(s)	151, 257, 515, 786
FspBI	CTAG	4 cut(s)	267, 282, 887, 903
GluI	GCNGC	4 cut(s)	151, 257, 515, 786
GsuI	CTGGAG	1 cut(s)	848
HapII	CCGG	1 cut(s)	775
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	157, 211, 605
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	1 cut(s)	779
HpaII	CCGG	1 cut(s)	775
HphI	GGTGA	2 cut(s)	140, 654
Hpy166II	GTNNAC	2 cut(s)	794, 908
Hpy188I	TCNGA	3 cut(s)	439, 685, 962
Hpy188III	TCNNGA	3 cut(s)	360, 848, 917
Hpy8I	GTNNAC	2 cut(s)	794, 908
HpyAV	CCTTC	3 cut(s)	218, 669, 886
HpyCH4III	ACNGT	5 cut(s)	54, 60, 95, 304, 742
HpyCH4IV	ACGT	2 cut(s)	796, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	547, 580, 655, 883
HpyF3I	CTNAG	3 cut(s)	192, 869, 918
HpySE526I	ACGT	2 cut(s)	796, 844
Hsp92II	CATG	3 cut(s)	157, 211, 605
Kzo9I	GATC	1 cut(s)	356
LmnI	GCTCC	2 cut(s)	883, 958
Lsp1109I	GCAGC	4 cut(s)	162, 268, 501, 772
LweI	GCATC	3 cut(s)	443, 497, 550
MaeI	CTAG	4 cut(s)	267, 282, 887, 903
MaeII	ACGT	2 cut(s)	796, 844
MaeIII	GTNAC	2 cut(s)	54, 128
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	4 cut(s)	310, 748, 769, 863
MhlI	GDGCHC	1 cut(s)	910
MluCI	AATT	1 cut(s)	43
Mph1103I	ATGCAT	1 cut(s)	603
MseI	TTAA	2 cut(s)	278, 668
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	1 cut(s)	775
MspR9I	CCNGG	2 cut(s)	699, 776
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	547, 580, 655, 883
NciI	CCSGG	1 cut(s)	776
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	1 cut(s)	356
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	157, 211, 605
NmuCI	GTSAC	2 cut(s)	54, 128
NsiI	ATGCAT	1 cut(s)	603
NspI	RCATGY	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	779
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	152, 258, 516, 787
PmaCI	CACGTG	1 cut(s)	797
PmlI	CACGTG	1 cut(s)	797
Ppu21I	YACGTR	1 cut(s)	797
PshBI	ATTAAT	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	697
PspCI	CACGTG	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	697
PspPI	GGNCC	2 cut(s)	458, 476
PstI	CTGCAG	3 cut(s)	152, 258, 519
PstNI	CAGNNNCTG	1 cut(s)	514
RsaI	GTAC	3 cut(s)	114, 229, 521
RsaNI	GTAC	3 cut(s)	113, 228, 520
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	278, 668
SatI	GCNGC	4 cut(s)	151, 257, 515, 786
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	2 cut(s)	458, 476
ScrFI	CCNGG	2 cut(s)	699, 776
SduI	GDGCHC	1 cut(s)	910
SfaNI	GCATC	3 cut(s)	443, 497, 550
SfcI	CTRYAG	3 cut(s)	148, 254, 515
SinI	GGWCC	2 cut(s)	458, 476
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	4 cut(s)	267, 282, 887, 903
StyD4I	CCNGG	2 cut(s)	697, 774
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	5 cut(s)	54, 60, 95, 304, 742
TaiI	ACGT	2 cut(s)	799, 847
TaqI	TCGA	2 cut(s)	86, 306
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	2 cut(s)	278, 668
Tru9I	TTAA	2 cut(s)	278, 668
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	2 cut(s)	54, 128
TseI	GCWGC	4 cut(s)	150, 256, 514, 785
Tsp45I	GTSAC	2 cut(s)	54, 128
TspDTI	ATGAA	4 cut(s)	170, 180, 837, 876
TspRI	CASTG	1 cut(s)	515
Van91I	CCANNNNNTGG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	906
VpaK11BI	GGWCC	2 cut(s)	458, 476
VspI	ATTAAT	1 cut(s)	668
XceI	RCATGY	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	4 cut(s)	267, 282, 887, 903
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.