Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Reverse (-)

20733257 .. 20739339

Gene Structure 6083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG112500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGGATACAGACAATGGGTTCTCAAGGTGGGGCTGATGGTAATTGCAAACAGTCACAGTTCCAGCCTTTGACAAGACAAAACTCAATTTACAGTCTCACGCTTGATGAGGTACAGAATCAGTTAGGTGACTTGGGGAAGCCACTCTGCAGCATGAACCTTGATGAACTTCTCAAAAGTGTATGGAGTGCTGAGGCGAACCAGACCATGGGTATGGACATTGAAGGTACTGCAATGGTCAATCAAGCTTCCCTGCAGCGTCAGGCTAGCCTGTCATTAACTAGTGCATTGAGCAAGAAGACAGTCGATGAGGTTTGGAGAGATATTCAACAAAGTAAAGATAATGAGGAAAAGAGATCACGAGAACGACAACCTACTTTGGGAGAGATGACTTTGGAGGATTTCTTGGTCAAAGCAGGAGTTGTTGCTGAAGCATCAGACAAAAAAAATGCTGGTGGTCCTCTTGTTGGCGTTGATCCAAATGTCGCATCGCAGTTTCCACAAGGTCAGTGGCTGCAGTACCCACAACCACAATATCAGCATCCACAGCAAAGTATGATGGGGGTATATATGCCAAATCAGCCTATTCCGCCTCCAATGCACGTAGGGGCTGTAATGGATGTGCCTTACCCTGATAACCAGCTTGCAATGCCTTCACCATTAATGGGTACATTATCAGATACACAGACACCTGGGAGGAAAAGGGGCAACCCAGAGGACATAGTTGAGAAGACTGTTGAGAGGAGGCAGAAGAGAATGATAAAGAACCGGGAATCTGCTGCTCGTTCACGTGCAAGGAAGCAGGCTTATACAAATGAACTGGAGAACAAAGTTTCACGTCTGGAGGAGGAGAATGAAAGGCTAAGGAAGCAAAAGGAGCTAGAGAAGGTGTTGCCTAGTGCACCACCTCCTGAGCCAAAGTATCAGCTTCGCAGAACAACATCAGCTCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

318

Amino Acids

35.59

Weight (kDa)

7.69

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	245 - 292	3.6e-10	Basic region leucine zipper
bZIP_1	PF00170	248 - 292	1.2e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	1 cut(s)	590
AclWI	GGATC	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	450
AcvI	CACGTG	1 cut(s)	791
AfaI	GTAC	4 cut(s)	114, 229, 521, 670
AfiI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 665
AgsI	TTSAA	2 cut(s)	224, 329
AhlI	ACTAGT	1 cut(s)	281
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	5 cut(s)	248, 643, 880, 928, 947
AluI	AGCT	5 cut(s)	248, 643, 880, 928, 947
Alw21I	GWGCWC	1 cut(s)	904
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	900
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	514
ApaLI	GTGCAC	1 cut(s)	900
ApeKI	GCWGC	4 cut(s)	150, 256, 514, 779
AseI	ATTAAT	1 cut(s)	662
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	770
AsuHPI	GGTGA	2 cut(s)	140, 648
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	904
BauI	CACGAG	1 cut(s)	360
BbrPI	CACGTG	1 cut(s)	791
BbsI	GAAGAC	2 cut(s)	305, 737
Bbv12I	GWGCWC	1 cut(s)	904
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	162, 268, 501, 766
BccI	CCATC	2 cut(s)	32, 553
BciT130I	CCWGG	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	770
BcoDI	GTCTC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	4 cut(s)	267, 282, 881, 897
BfmI	CTRYAG	3 cut(s)	148, 254, 515
BisI	GCNGC	4 cut(s)	151, 257, 515, 780
BlsI	GCNGC	4 cut(s)	152, 258, 516, 781
Bme1390I	CCNGG	2 cut(s)	693, 770
Bme18I	GGWCC	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	458
BmrFI	CCNGG	2 cut(s)	693, 770
BmsI	GCATC	3 cut(s)	443, 497, 550
BmtI	GCTAGC	1 cut(s)	270
BpiI	GAAGAC	2 cut(s)	305, 737
BpmI	CTGGAG	2 cut(s)	842, 863
Bpu10I	CCTNAGC	3 cut(s)	192, 863, 912
BpuEI	CTTGAG	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	770
BsaAI	YACGTR	2 cut(s)	604, 791
BsaJI	CCNNGG	2 cut(s)	207, 692
BsaXI	ACNNNNNCTCC	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 665
Bse1I	ACTGG	1 cut(s)	825
Bse3DI	GCAATG	2 cut(s)	240, 654
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	207, 692
BseGI	GGATG	2 cut(s)	541, 625
BseLI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 665
BseMI	GCAATG	2 cut(s)	240, 654
BseMII	CTCAG	2 cut(s)	183, 903
BseNI	ACTGG	1 cut(s)	825
BseRI	GAGGAG	3 cut(s)	757, 860, 863
BseSI	GKGCMC	1 cut(s)	904
BseXI	GCAGC	4 cut(s)	162, 268, 501, 766
BsiHKAI	GWGCWC	1 cut(s)	904
BsiSI	CCGG	1 cut(s)	769
BslI	CCNNNNNNNGG	4 cut(s)	208, 380, 467, 665
BsmAI	GTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	904
Bsp143I	GATC	2 cut(s)	356, 475
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	1 cut(s)	590
BspCNI	CTCAG	2 cut(s)	184, 904
BspMAI	CTGCAG	3 cut(s)	152, 258, 519
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	240, 654
BsrI	ACTGG	1 cut(s)	825
BssECI	CCNNGG	2 cut(s)	207, 692
BssMI	GATC	2 cut(s)	356, 475
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	5 cut(s)	54, 60, 95, 304, 736
Bst6I	CTCTTC	1 cut(s)	746
BstBAI	YACGTR	2 cut(s)	604, 791
BstC8I	GCNNGC	3 cut(s)	268, 645, 804
BstDEI	CTNAG	3 cut(s)	192, 863, 912
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	541, 625
BstKTI	GATC	2 cut(s)	359, 478
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	356, 475
BstMWI	GCNNNNNNNGC	7 cut(s)	547, 580, 589, 598, 649, 868, 877
BstNI	CCWGG	1 cut(s)	693
BstSCI	CCNGG	2 cut(s)	691, 768
BstSFI	CTRYAG	3 cut(s)	148, 254, 515
BstSLI	GKGCMC	1 cut(s)	904
BstV1I	GCAGC	4 cut(s)	162, 268, 501, 766
BstV2I	GAAGAC	2 cut(s)	305, 737
BstXI	CCANNNNNNTGG	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	839
BtsCI	GGATG	2 cut(s)	541, 625
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	3 cut(s)	268, 645, 804
CaiI	CAGNNNCTG	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	113, 228, 520, 669
CspCI	CAANNNNNGTGG	2 cut(s)	491, 526
CviAII	CATG	2 cut(s)	154, 208
CviQI	GTAC	4 cut(s)	113, 228, 520, 669
DdeI	CTNAG	3 cut(s)	192, 863, 912
DpnI	GATC	2 cut(s)	358, 477
DpnII	GATC	2 cut(s)	356, 475
Eam1104I	CTCTTC	1 cut(s)	746
EarI	CTCTTC	1 cut(s)	746
EciI	GGCGGA	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	450
Eco72I	CACGTG	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	157, 211
FatI	CATG	2 cut(s)	153, 207
Fnu4HI	GCNGC	4 cut(s)	151, 257, 515, 780
FokI	GGATG	2 cut(s)	528, 632
Fsp4HI	GCNGC	4 cut(s)	151, 257, 515, 780
FspBI	CTAG	4 cut(s)	267, 282, 881, 897
GluI	GCNGC	4 cut(s)	151, 257, 515, 780
GsuI	CTGGAG	2 cut(s)	842, 863
HapII	CCGG	1 cut(s)	769
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	157, 211
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	118, 773
HpaII	CCGG	1 cut(s)	769
HphI	GGTGA	2 cut(s)	140, 648
Hpy166II	GTNNAC	2 cut(s)	788, 902
Hpy188I	TCNGA	3 cut(s)	439, 679, 956
Hpy188III	TCNNGA	3 cut(s)	360, 842, 911
Hpy8I	GTNNAC	2 cut(s)	788, 902
HpyAV	CCTTC	3 cut(s)	218, 663, 880
HpyCH4III	ACNGT	5 cut(s)	54, 60, 95, 304, 736
HpyCH4IV	ACGT	3 cut(s)	603, 790, 838
HpyF10VI	GCNNNNNNNGC	7 cut(s)	547, 580, 589, 598, 649, 868, 877
HpyF3I	CTNAG	3 cut(s)	192, 863, 912
HpySE526I	ACGT	3 cut(s)	603, 790, 838
Hsp92II	CATG	2 cut(s)	157, 211
Kzo9I	GATC	2 cut(s)	356, 475
LmnI	GCTCC	2 cut(s)	877, 952
Lsp1109I	GCAGC	4 cut(s)	162, 268, 501, 766
LweI	GCATC	3 cut(s)	443, 497, 550
MaeI	CTAG	4 cut(s)	267, 282, 881, 897
MaeII	ACGT	3 cut(s)	603, 790, 838
MaeIII	GTNAC	2 cut(s)	54, 128
MalI	GATC	2 cut(s)	358, 477
MboI	GATC	2 cut(s)	356, 475
MboII	GAAGA	3 cut(s)	310, 742, 763
MhlI	GDGCHC	1 cut(s)	904
MluCI	AATT	2 cut(s)	43, 87
MseI	TTAA	2 cut(s)	278, 662
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	1 cut(s)	769
MspR9I	CCNGG	2 cut(s)	693, 770
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	7 cut(s)	547, 580, 589, 598, 649, 868, 877
NciI	CCSGG	1 cut(s)	770
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	2 cut(s)	356, 475
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	157, 211
NmuCI	GTSAC	2 cut(s)	54, 128
PfeI	GAWTC	2 cut(s)	118, 773
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	152, 258, 516, 781
PmaCI	CACGTG	1 cut(s)	791
PmlI	CACGTG	1 cut(s)	791
Ppu21I	YACGTR	2 cut(s)	604, 791
PshBI	ATTAAT	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	691
PspCI	CACGTG	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	691
PspPI	GGNCC	1 cut(s)	458
PstI	CTGCAG	3 cut(s)	152, 258, 519
PstNI	CAGNNNCTG	1 cut(s)	514
RsaI	GTAC	4 cut(s)	114, 229, 521, 670
RsaNI	GTAC	4 cut(s)	113, 228, 520, 669
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	278, 662
SatI	GCNGC	4 cut(s)	151, 257, 515, 780
Sau3AI	GATC	2 cut(s)	356, 475
Sau96I	GGNCC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	693, 770
SduI	GDGCHC	1 cut(s)	904
SfaNI	GCATC	3 cut(s)	443, 497, 550
SfcI	CTRYAG	3 cut(s)	148, 254, 515
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	2 cut(s)	43, 87
SsiI	CCGC	1 cut(s)	590
SspMI	CTAG	4 cut(s)	267, 282, 881, 897
StyD4I	CCNGG	2 cut(s)	691, 768
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	5 cut(s)	54, 60, 95, 304, 736
TaiI	ACGT	3 cut(s)	606, 793, 841
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	43, 87
TfiI	GAWTC	2 cut(s)	118, 773
Tru1I	TTAA	2 cut(s)	278, 662
Tru9I	TTAA	2 cut(s)	278, 662
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	2 cut(s)	54, 128
TseI	GCWGC	4 cut(s)	150, 256, 514, 779
Tsp45I	GTSAC	2 cut(s)	54, 128
TspDTI	ATGAA	4 cut(s)	170, 180, 831, 870
TspRI	CASTG	1 cut(s)	515
Van91I	CCANNNNNTGG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	900
VpaK11BI	GGWCC	1 cut(s)	458
VspI	ATTAAT	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	4 cut(s)	267, 282, 881, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.