Rorug01G0089000
BZIP Family

ABSCISIC ACID-INSENSITIVE 5-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005469
Physical Location & Seq
Reverse (-)
14470018 .. 14477558
7541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0089000.1

Sequence Viewer

Length: 1131 bp
ATGGAGAGAAGAGGCCGTCGAAACCGTTCTTCTTCTTCTTCTCGGGGTTCAAGATCCTGGAGCAGAGGTGGAACTAGTTCCGCCGAGAAAGTGGAAAACGTCGCCGTTTCCGATGTTCCCCCCATAGTGGGTACTTGCACTTTGATGTGCCCAGAAGCAGAAAGGGCACAGCGGGAGCGCCTTCGCGATTTAGCTACCTTTGAGAGGCTAAATGGAAATCCAGCTCGCTCATCGCCATCCATTGCAGTTAAAAAGTTTTTCAGAACTATGTCCACCAAACAAGTTCAAGCATCAGATGTTCGGCCGCTCCCTGTTTTGGAGGATACTTTAAATTACCTCTTAGAGTTGTTTGATTCTAAAGACTATCCTTTTGAAGTGATTCACGACTTCCTCTTTGATCGAACAAGGTCCATAAGGCAAGATCTTAGCATGCAGAATATTGGTGGCGAGAAAGCAATTCACATGTATCAGGAAATGGTTAAATTTCATATCATCTCTCTTCATAAGCTTCGAGGTTGCAGCAGTCAAAATACTTCTCCAATGCATCACCTCAACCTGGAGCAGCTTGCAAAGACCTTGACATCTCTATTTAATCTGTATGGCGCAAATCGTCATTCCAATTCTACTTATGAAAATGAGGCTGAGTTTTGTTCTTTTTATGTGCTACTTCATCTTGGTTCTCATAGCCAACCCCTGGGGGAGTCACTTTCTTGGTGGTTTAGTAGTGTGCCTTCTTCGATAATCAAGTCAAAGGAAATGCATTTTTCCCGAAAGATTTTACGATATTTTCGGATGGGTAACTATAAACGTTTCTTAAGTACTGTAGCAGCTGAGGCATCTTATCATCAATACTGCATTATTGAGCCTTATGTAGATGAGGTTCGAGTTTTAGCTGTGTCATGCATCAATAGTGGTGGCTATAAGCTTCATCCATATCCTCTGTCGCATTTATCCAAACTCTTGATTATGAAGGAATCAGATTTGGAATCTTTTCTCAAATCCTGTGGTCTTCAAATTTGCACTGATGAAGAAGGACATAATTTGTTGCCCACTAAGCAAACGACCTTTTGTCATCCCAAGGATGGGTCTCAAAACTACAGGTTTTGGGGTATGGAACAATTTGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

376

Amino Acids

43.16

Weight (kDa)

8.86

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAC3_GANP PF03399 49 - 339 2.1e-79 SAC3/GANP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 694
AccBSI CCGCTC 1 cut(s) 307
AccII CGCG 1 cut(s) 186
AciI CCGC 3 cut(s) 81, 172, 305
AclI AACGTT 1 cut(s) 808
AclWI GGATC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 2 cut(s) 482, 1014
AfaI GTAC 2 cut(s) 133, 820
AfiI CCNNNNNNNGG 8 cut(s) 127, 128, 204, 316, 556, 694, 1082, 1083
AflII CTTAAG 1 cut(s) 814
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 4 cut(s) 51, 287, 374, 1013
AhdI GACNNNNNGTC 1 cut(s) 1068
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 3 cut(s) 56, 555, 693
AluBI AGCT 7 cut(s) 194, 224, 508, 565, 830, 893, 925
AluI AGCT 7 cut(s) 194, 224, 508, 565, 830, 893, 925
Alw26I GTCTC 1 cut(s) 1092
AlwI GGATC 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 2 cut(s) 13, 302
ApeKI GCWGC 3 cut(s) 519, 562, 827
ApoI RAATTY 2 cut(s) 482, 1014
ArsI GACNNNNNNTTYG 4 cut(s) 353, 377, 385, 409
Asp700I GAANNNNTTC 4 cut(s) 25, 76, 378, 990
AspLEI GCGC 2 cut(s) 180, 605
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 42
AvaII GGWCC 1 cut(s) 408
BaeGI GKGCMC 2 cut(s) 152, 169
BarI GAAGNNNNNNTAC 2 cut(s) 715, 747
BbsI GAAGAC 1 cut(s) 1001
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 3 cut(s) 531, 574, 839
BccI CCATC 3 cut(s) 244, 787, 1076
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 3 cut(s) 58, 557, 695
BciVI GTATCC 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 1092
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 2 cut(s) 822, 1096
BfoI RGCGCY 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 814
BfuI GTATCC 1 cut(s) 316
BglII AGATCT 1 cut(s) 421
BisI GCNGC 4 cut(s) 305, 520, 563, 828
BlsI GCNGC 4 cut(s) 306, 521, 564, 829
BmcAI AGTACT 1 cut(s) 820
Bme1390I CCNGG 3 cut(s) 58, 557, 695
Bme18I GGWCC 1 cut(s) 408
BmeRI GACNNNNNGTC 1 cut(s) 1068
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 408
BmrFI CCNGG 3 cut(s) 58, 557, 695
BmsI GCATC 4 cut(s) 299, 553, 845, 912
BpiI GAAGAC 1 cut(s) 1001
BpmI CTGGAG 2 cut(s) 79, 578
Bpu10I CCTNAGC 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 1092
BsaJI CCNNGG 3 cut(s) 693, 694, 1077
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 8 cut(s) 127, 128, 204, 316, 556, 694, 1082, 1083
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 3 cut(s) 58, 557, 695
BseDI CCNNGG 3 cut(s) 693, 694, 1077
BseGI GGATG 5 cut(s) 236, 798, 928, 1072, 1087
BseLI CCNNNNNNNGG 8 cut(s) 127, 128, 204, 316, 556, 694, 1082, 1083
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 633, 822
BseSI GKGCMC 2 cut(s) 152, 169
BseX3I CGGCCG 1 cut(s) 302
BseXI GCAGC 3 cut(s) 531, 574, 839
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 305
BshFI GGCC 2 cut(s) 15, 304
BsiEI CGRYCG 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 42
BslI CCNNNNNNNGG 8 cut(s) 127, 128, 204, 316, 556, 694, 1082, 1083
BsmAI GTCTC 1 cut(s) 1092
BsnI GGCC 2 cut(s) 15, 304
Bso31I GGTCTC 1 cut(s) 1092
BsoBI CYCGRG 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 152, 169
Bsp143I GATC 3 cut(s) 53, 397, 421
Bsp68I TCGCGA 1 cut(s) 186
BspACI CCGC 3 cut(s) 81, 172, 305
BspANI GGCC 2 cut(s) 15, 304
BspCNI CTCAG 2 cut(s) 634, 823
BspFNI CGCG 1 cut(s) 186
BspPI GGATC 1 cut(s) 48
BspTI CTTAAG 1 cut(s) 814
BspTNI GGTCTC 1 cut(s) 1092
BsrBI CCGCTC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 693, 694, 1077
BssMI GATC 3 cut(s) 53, 397, 421
BssT1I CCWWGG 1 cut(s) 1077
Bst2UI CCWGG 3 cut(s) 58, 557, 695
Bst4CI ACNGT 2 cut(s) 26, 823
Bst6I CTCTTC 2 cut(s) 4, 504
BstAFI CTTAAG 1 cut(s) 814
BstC8I GCNNGC 3 cut(s) 226, 431, 567
BstDEI CTNAG 5 cut(s) 340, 425, 642, 831, 1053
BstENI CCTNNNNNAGG 1 cut(s) 202
BstF5I GGATG 5 cut(s) 236, 798, 928, 1072, 1087
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 2 cut(s) 180, 605
BstKTI GATC 3 cut(s) 56, 400, 424
BstMAI GTCTC 1 cut(s) 1092
BstMBI GATC 3 cut(s) 53, 397, 421
BstMCI CGRYCG 1 cut(s) 305
BstMWI GCNNNNNNNGC 3 cut(s) 164, 833, 1054
BstNI CCWGG 3 cut(s) 58, 557, 695
BstNSI RCATGY 2 cut(s) 433, 466
BstSCI CCNGG 3 cut(s) 56, 555, 693
BstSFI CTRYAG 2 cut(s) 822, 1096
BstSLI GKGCMC 2 cut(s) 152, 169
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 531, 574, 839
BstV2I GAAGAC 1 cut(s) 1001
BstX2I RGATCY 2 cut(s) 53, 421
BstYI RGATCY 2 cut(s) 53, 421
BstZI CGGCCG 1 cut(s) 302
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 15, 304
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 5 cut(s) 236, 798, 928, 1072, 1087
BtsIMutI CAGTG 1 cut(s) 1020
BtuMI TCGCGA 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 226, 431, 567
CfoI GCGC 2 cut(s) 180, 605
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 2 cut(s) 132, 819
CspCI CAANNNNNGTGG 4 cut(s) 895, 930, 985, 1020
CviAII CATG 3 cut(s) 430, 463, 900
CviQI GTAC 2 cut(s) 132, 819
DdeI CTNAG 5 cut(s) 340, 425, 642, 831, 1053
DpnI GATC 3 cut(s) 55, 399, 423
DpnII GATC 3 cut(s) 53, 397, 421
DraI TTTAAA 1 cut(s) 330
DriI GACNNNNNGTC 1 cut(s) 1068
EaeI YGGCCR 1 cut(s) 302
EagI CGGCCG 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 4, 504
Eam1105I GACNNNNNGTC 1 cut(s) 1068
EarI CTCTTC 2 cut(s) 4, 504
EciI GGCGGA 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 1077
Eco31I GGTCTC 1 cut(s) 1092
Eco47I GGWCC 1 cut(s) 408
Eco52I CGGCCG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 42
EcoNI CCTNNNNNAGG 1 cut(s) 202
EcoRII CCWGG 3 cut(s) 56, 555, 693
EcoT14I CCWWGG 1 cut(s) 1077
EcoT22I ATGCAT 3 cut(s) 546, 762, 905
ErhI CCWWGG 1 cut(s) 1077
FaeI CATG 3 cut(s) 433, 466, 903
FatI CATG 3 cut(s) 429, 462, 899
FauI CCCGC 1 cut(s) 165
Fnu4HI GCNGC 4 cut(s) 305, 520, 563, 828
FokI GGATG 5 cut(s) 223, 805, 915, 1059, 1094
Fsp4HI GCNGC 4 cut(s) 305, 520, 563, 828
FspBI CTAG 1 cut(s) 75
GlaI GCGC 2 cut(s) 179, 604
GluI GCNGC 4 cut(s) 305, 520, 563, 828
GsuI CTGGAG 2 cut(s) 79, 578
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 2 cut(s) 15, 304
HhaI GCGC 2 cut(s) 180, 605
Hin1II CATG 3 cut(s) 433, 466, 903
Hin6I GCGC 2 cut(s) 178, 603
HinP1I GCGC 2 cut(s) 178, 603
HindIII AAGCTT 2 cut(s) 506, 923
HinfI GANTC 5 cut(s) 353, 379, 701, 974, 986
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 5 cut(s) 112, 263, 295, 792, 979
Hpy188III TCNNGA 6 cut(s) 51, 185, 383, 470, 768, 961
Hpy8I GTNNAC 1 cut(s) 273
Hpy99I CGWCG 2 cut(s) 21, 104
HpyAV CCTTC 4 cut(s) 191, 741, 964, 1025
HpyCH4III ACNGT 2 cut(s) 26, 823
HpyCH4IV ACGT 2 cut(s) 99, 808
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 833, 1054
HpyF3I CTNAG 5 cut(s) 340, 425, 642, 831, 1053
HpySE526I ACGT 2 cut(s) 99, 808
Hsp92II CATG 3 cut(s) 433, 466, 903
HspAI GCGC 2 cut(s) 178, 603
Kzo9I GATC 3 cut(s) 53, 397, 421
LmnI GCTCC 4 cut(s) 60, 175, 312, 559
Lsp1109I GCAGC 3 cut(s) 531, 574, 839
LweI GCATC 4 cut(s) 299, 553, 845, 912
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 99, 808
MaeIII GTNAC 2 cut(s) 702, 797
MalI GATC 3 cut(s) 55, 399, 423
MbiI CCGCTC 1 cut(s) 307
MboI GATC 3 cut(s) 53, 397, 421
MboII GAAGA 9 cut(s) 21, 21, 24, 27, 30, 491, 726, 1001, 1040
MflI RGATCY 2 cut(s) 53, 421
MhlI GDGCHC 2 cut(s) 152, 169
MluCI AATT 7 cut(s) 331, 456, 482, 619, 1014, 1039, 1118
MlyI GAGTC 1 cut(s) 710
Mph1103I ATGCAT 3 cut(s) 546, 762, 905
MroXI GAANNNNTTC 4 cut(s) 25, 76, 378, 990
MseI TTAA 5 cut(s) 249, 329, 480, 591, 815
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 2 cut(s) 172, 830
MspCI CTTAAG 1 cut(s) 814
MspR9I CCNGG 3 cut(s) 58, 557, 695
MvaI CCWGG 3 cut(s) 58, 557, 695
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 164, 833, 1054
NdeII GATC 3 cut(s) 53, 397, 421
NlaIII CATG 3 cut(s) 433, 466, 903
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 702
NruI TCGCGA 1 cut(s) 186
NsiI ATGCAT 3 cut(s) 546, 762, 905
NspI RCATGY 2 cut(s) 433, 466
PaeI GCATGC 1 cut(s) 433
PasI CCCWGGG 1 cut(s) 694
PciI ACATGT 1 cut(s) 462
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 4 cut(s) 25, 76, 378, 990
PfeI GAWTC 4 cut(s) 353, 379, 974, 986
PflMI CCANNNNNTGG 1 cut(s) 694
PfoI TCCNGGA 1 cut(s) 56
PkrI GCNGC 4 cut(s) 306, 521, 564, 829
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PscI ACATGT 1 cut(s) 462
Psp1406I AACGTT 1 cut(s) 808
Psp6I CCWGG 3 cut(s) 56, 555, 693
PspGI CCWGG 3 cut(s) 56, 555, 693
PspPI GGNCC 1 cut(s) 408
PsrI GAACNNNNNNTAC 2 cut(s) 864, 896
PsuI RGATCY 2 cut(s) 53, 421
PvuII CAGCTG 1 cut(s) 830
RruI TCGCGA 1 cut(s) 186
RsaI GTAC 2 cut(s) 133, 820
RsaNI GTAC 2 cut(s) 132, 819
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 5 cut(s) 249, 329, 480, 591, 815
SatI GCNGC 4 cut(s) 305, 520, 563, 828
Sau3AI GATC 3 cut(s) 53, 397, 421
Sau96I GGNCC 1 cut(s) 408
ScaI AGTACT 1 cut(s) 820
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 3 cut(s) 58, 557, 695
SduI GDGCHC 2 cut(s) 152, 169
SfaNI GCATC 4 cut(s) 299, 553, 845, 912
SfcI CTRYAG 2 cut(s) 822, 1096
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 814
SmoI CTYRAG 1 cut(s) 814
SpeI ACTAGT 1 cut(s) 74
SphI GCATGC 1 cut(s) 433
Sse9I AATT 7 cut(s) 331, 456, 482, 619, 1014, 1039, 1118
SsiI CCGC 3 cut(s) 81, 172, 305
SspI AATATT 1 cut(s) 439
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 56, 555, 693
StyI CCWWGG 1 cut(s) 1077
TaaI ACNGT 2 cut(s) 26, 823
TaiI ACGT 2 cut(s) 102, 811
TaqI TCGA 5 cut(s) 19, 400, 511, 737, 883
TasI AATT 7 cut(s) 331, 456, 482, 619, 1014, 1039, 1118
TatI WGTACW 1 cut(s) 818
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 4 cut(s) 353, 379, 974, 986
Tru1I TTAA 5 cut(s) 249, 329, 480, 591, 815
Tru9I TTAA 5 cut(s) 249, 329, 480, 591, 815
TscAI CASTG 1 cut(s) 1027
TseFI GTSAC 1 cut(s) 702
TseI GCWGC 3 cut(s) 519, 562, 827
Tsp45I GTSAC 1 cut(s) 702
TspDTI ATGAA 7 cut(s) 476, 491, 645, 659, 917, 983, 1041
TspRI CASTG 1 cut(s) 1027
Van91I CCANNNNNTGG 1 cut(s) 694
Vha464I CTTAAG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 202
XapI RAATTY 2 cut(s) 482, 1014
XceI RCATGY 2 cut(s) 433, 466
XmnI GAANNNNTTC 4 cut(s) 25, 76, 378, 990
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 820
Zsp2I ATGCAT 3 cut(s) 546, 762, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.