Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005469

Physical Location & Seq

Genomic Coordinates Forward (+)

32087064 .. 32093702

Gene Structure 6639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1266800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGATACCGACAATGGGATCTCAAGGTGGGGCTGATGGTAATTGCAAACAGTCACAGTTCCAACCTTTGGCACGGCAAAACTCAATTTACAGTCTTACCTTGGACGAGGTACAGAATCAGTTAGGTGACTTGGGGAAGCCACTCAGCAGCATGAACCTTGACGAGCTTCTAAAAAATGTATGGAGTGCTGAAGCTAATCAGATCATGGGTATAGATATTGAAGGCAATACACTGGTCAATCAAGCTCAACTGCAGCGTCAGGCAAGCCTGTCATTAACTAGTGCATTGAGCAAGAAGACAGTTGATGAGGTTTGGAAAGATATTCAACAAAGCAAAGATGAAGAAGAAAAGAAATCTCAAGAACGACAACGGACTTTGGGAGAGATGACTTTGGAGGATTTCTTGGTCAAAGCCGGAGTTGTTGCTGAAGCTGAAGCATCTTCAGACAAAAAATATGCTGATCCTCTAGTTGGGGTTGATGCAAATGTGGCAGCACAGTTGCCACAAGGTCAGTGGATGCAGTACCCACAACCACAATATCAGCATCCACAACAAAGTATGATGGGGGTATACATGCCAAGCCAACCTTTACAACCACCAATGCATGTAGGTGCTGGAGCTATGATGGAATTGCCGTATCCTGACAACCAAGTTGCGGTGCCTTCACCCTTAATGGGTACGTTATCAGATACGCAGACACCTGGGAGGAAAAGAGGCAACCCTGAGGACATAGTTGAGAAGACTGTTGAGCGAAGGCAAAAGAGAATGATAAAGAACCGGGAATCTGCTGCACGTTCGCGAGCAAGGAAGCAGGCATATACAAATGAACTGGAGAACAAAGTTTCACGCCTGGAGGAGGAAAATGAAAGGCTAAGGAAACAGAAGGAGCAAGAGAAGGTGTTGCCGAGTGCTCCGCCTCCGGAGCCAAAGTACCAGCTTCGTAGAACGACATCAGCTCCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

323

Amino Acids

36.03

Weight (kDa)

5.94

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	249 - 298	3.9e-10	Basic region leucine zipper
bZIP_1	PF00170	252 - 298	2e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT2G41070 AT3G56850
fragaria_vesca	FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850 FvH4_7g04850
malus_domestica	MD02G1266800.v1.1 MD07G1052500.v1.1
prunus_persica	Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1 Prupe.2G056800_v2.0.a1
pyrus_communis	pycom02g22840 pycom07g04090
rosa_chinensis	RchiOBHm_Chr1g0330441
rosa_laevigata	RLG00000029810
rosa_multiflora	Rmu_sc0007290.1_g000007
rosa_roxburghii	Rroxscaffold_4G00319940
rosa_rugosa	Rorug01G0089000
rosa_samantha	Rh1AG107000 Rh1BG085100 Rh1CG102900 Rh1DG112500
rosa_wichuraiana	Rw1G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	1 cut(s)	802
AccIII	TCCGGA	1 cut(s)	922
AciI	CCGC	2 cut(s)	659, 917
AclWI	GGATC	2 cut(s)	28, 458
AcuI	CTGAAG	4 cut(s)	213, 429, 450, 456
AfaI	GTAC	4 cut(s)	114, 527, 682, 935
AfiI	CCNNNNNNNGG	6 cut(s)	17, 70, 473, 658, 677, 859
AgsI	TTSAA	2 cut(s)	224, 329
AhlI	ACTAGT	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	703, 852
AluBI	AGCT	7 cut(s)	169, 197, 248, 434, 623, 940, 959
AluI	AGCT	7 cut(s)	169, 197, 248, 434, 623, 940, 959
Alw21I	GWGCWC	1 cut(s)	916
AlwI	GGATC	2 cut(s)	28, 458
Aor13HI	TCCGGA	1 cut(s)	922
ApeKI	GCWGC	4 cut(s)	150, 256, 494, 791
AsuC2I	CCSGG	1 cut(s)	782
AsuHPI	GGTGA	2 cut(s)	140, 660
AxyI	CCTNAGG	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	661
BbsI	GAAGAC	2 cut(s)	305, 749
Bbv12I	GWGCWC	1 cut(s)	916
BbvI	GCAGC	4 cut(s)	162, 268, 506, 778
BccI	CCATC	3 cut(s)	32, 559, 622
BceAI	ACGGC	2 cut(s)	92, 622
BciT130I	CCWGG	2 cut(s)	705, 854
BciVI	GTATCC	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	782
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	2 cut(s)	282, 470
BfmI	CTRYAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	4 cut(s)	151, 257, 495, 792
BlsI	GCNGC	4 cut(s)	152, 258, 496, 793
Bme1390I	CCNGG	3 cut(s)	705, 782, 854
BmiI	GGNNCC	2 cut(s)	663, 927
BmrFI	CCNGG	3 cut(s)	705, 782, 854
BmsI	GCATC	4 cut(s)	449, 472, 510, 556
BpiI	GAAGAC	2 cut(s)	305, 749
BpmI	CTGGAG	3 cut(s)	639, 854, 875
Bpu10I	CCTNAGC	1 cut(s)	875
BpuEI	CTTGAG	2 cut(s)	9, 345
BpuMI	CCSGG	1 cut(s)	782
BsaJI	CCNNGG	2 cut(s)	102, 704
BsaWI	WCCGGW	1 cut(s)	922
BsaXI	ACNNNNNCTCC	3 cut(s)	917, 943, 947
Bsc4I	CCNNNNNNNGG	6 cut(s)	17, 70, 473, 658, 677, 859
Bse1I	ACTGG	2 cut(s)	240, 837
Bse21I	CCTNAGG	1 cut(s)	726
BseAI	TCCGGA	1 cut(s)	922
BseBI	CCWGG	2 cut(s)	705, 854
BseDI	CCNNGG	2 cut(s)	102, 704
BseGI	GGATG	2 cut(s)	525, 547
BseLI	CCNNNNNNNGG	6 cut(s)	17, 70, 473, 658, 677, 859
BseMII	CTCAG	2 cut(s)	160, 717
BseNI	ACTGG	2 cut(s)	240, 837
BseRI	GAGGAG	1 cut(s)	872
BseXI	GCAGC	4 cut(s)	162, 268, 506, 778
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	802
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	916
BsiSI	CCGG	3 cut(s)	417, 781, 923
BslI	CCNNNNNNNGG	6 cut(s)	17, 70, 473, 658, 677, 859
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp13I	TCCGGA	1 cut(s)	922
Bsp143I	GATC	3 cut(s)	20, 204, 463
Bsp68I	TCGCGA	1 cut(s)	802
BspACI	CCGC	2 cut(s)	659, 917
BspCNI	CTCAG	2 cut(s)	159, 718
BspEI	TCCGGA	1 cut(s)	922
BspFNI	CGCG	1 cut(s)	802
BspLI	GGNNCC	2 cut(s)	663, 927
BspMAI	CTGCAG	1 cut(s)	258
BspPI	GGATC	2 cut(s)	28, 458
BspT107I	GGYRCC	1 cut(s)	661
BsrI	ACTGG	2 cut(s)	240, 837
BssECI	CCNNGG	2 cut(s)	102, 704
BssMI	GATC	3 cut(s)	20, 204, 463
BssNAI	GTATAC	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	102
Bst1107I	GTATAC	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	705, 854
Bst4CI	ACNGT	6 cut(s)	54, 60, 95, 304, 501, 748
BstC8I	GCNNGC	3 cut(s)	268, 804, 816
BstDEI	CTNAG	3 cut(s)	146, 726, 875
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstF5I	GGATG	2 cut(s)	525, 547
BstFNI	CGCG	1 cut(s)	802
BstKTI	GATC	3 cut(s)	23, 207, 466
BstMBI	GATC	3 cut(s)	20, 204, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 925
BstNI	CCWGG	2 cut(s)	705, 854
BstNSI	RCATGY	2 cut(s)	580, 611
BstSCI	CCNGG	3 cut(s)	703, 780, 852
BstSFI	CTRYAG	1 cut(s)	254
BstUI	CGCG	1 cut(s)	802
BstV1I	GCAGC	4 cut(s)	162, 268, 506, 778
BstV2I	GAAGAC	2 cut(s)	305, 749
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BstZ17I	GTATAC	1 cut(s)	574
Bsu36I	CCTNAGG	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	651
BtsCI	GGATG	2 cut(s)	525, 547
BtsIMutI	CAGTG	2 cut(s)	233, 521
BtuMI	TCGCGA	1 cut(s)	802
Cac8I	GCNNGC	3 cut(s)	268, 804, 816
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	4 cut(s)	113, 526, 681, 934
CspCI	CAANNNNNGTGG	2 cut(s)	497, 532
CviAII	CATG	4 cut(s)	154, 208, 577, 608
CviQI	GTAC	4 cut(s)	113, 526, 681, 934
DdeI	CTNAG	3 cut(s)	146, 726, 875
DpnI	GATC	3 cut(s)	22, 206, 465
DpnII	GATC	3 cut(s)	20, 204, 463
EciI	GGCGGA	1 cut(s)	906
Eco130I	CCWWGG	1 cut(s)	102
Eco57I	CTGAAG	4 cut(s)	213, 429, 450, 456
Eco81I	CCTNAGG	1 cut(s)	726
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoRII	CCWGG	2 cut(s)	703, 852
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	157, 211, 580, 611
FalI	AAGNNNNNCTT	2 cut(s)	574, 606
FatI	CATG	4 cut(s)	153, 207, 576, 607
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	151, 257, 495, 792
FokI	GGATG	2 cut(s)	532, 534
Fsp4HI	GCNGC	4 cut(s)	151, 257, 495, 792
FspBI	CTAG	2 cut(s)	282, 470
GluI	GCNGC	4 cut(s)	151, 257, 495, 792
GsuI	CTGGAG	3 cut(s)	639, 854, 875
HapII	CCGG	3 cut(s)	417, 781, 923
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	157, 211, 580, 611
HinfI	GANTC	2 cut(s)	118, 785
HpaII	CCGG	3 cut(s)	417, 781, 923
HphI	GGTGA	2 cut(s)	140, 660
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	4 cut(s)	204, 448, 691, 968
Hpy188III	TCNNGA	4 cut(s)	362, 644, 801, 923
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	5 cut(s)	218, 675, 750, 880, 892
HpyCH4III	ACNGT	6 cut(s)	54, 60, 95, 304, 501, 748
HpyCH4IV	ACGT	2 cut(s)	683, 796
HpyCH4V	TGCA	7 cut(s)	48, 256, 287, 485, 523, 607, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 925
HpyF3I	CTNAG	3 cut(s)	146, 726, 875
HpySE526I	ACGT	2 cut(s)	683, 796
Hsp92II	CATG	4 cut(s)	157, 211, 580, 611
Kpn2I	TCCGGA	1 cut(s)	922
Kzo9I	GATC	3 cut(s)	20, 204, 463
LmnI	GCTCC	5 cut(s)	620, 889, 919, 925, 964
Lsp1109I	GCAGC	4 cut(s)	162, 268, 506, 778
LweI	GCATC	4 cut(s)	449, 472, 510, 556
MaeI	CTAG	2 cut(s)	282, 470
MaeII	ACGT	2 cut(s)	683, 796
MaeIII	GTNAC	2 cut(s)	54, 128
MalI	GATC	3 cut(s)	22, 206, 465
MboI	GATC	3 cut(s)	20, 204, 463
MboII	GAAGA	5 cut(s)	310, 356, 359, 435, 754
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	3 cut(s)	43, 87, 632
MmeI	TCCRAC	1 cut(s)	88
Mph1103I	ATGCAT	1 cut(s)	609
MroI	TCCGGA	1 cut(s)	922
MseI	TTAA	2 cut(s)	278, 674
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	3 cut(s)	417, 781, 923
MspR9I	CCNGG	3 cut(s)	705, 782, 854
MvaI	CCWGG	2 cut(s)	705, 854
MvnI	CGCG	1 cut(s)	802
MwoI	GCNNNNNNNGC	2 cut(s)	491, 925
NciI	CCSGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	20, 204, 463
NlaIII	CATG	4 cut(s)	157, 211, 580, 611
NlaIV	GGNNCC	2 cut(s)	663, 927
NmeAIII	GCCGAG	1 cut(s)	933
NmuCI	GTSAC	2 cut(s)	54, 128
NruI	TCGCGA	1 cut(s)	802
NsiI	ATGCAT	1 cut(s)	609
NspI	RCATGY	2 cut(s)	580, 611
PfeI	GAWTC	2 cut(s)	118, 785
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	152, 258, 496, 793
Psp6I	CCWGG	2 cut(s)	703, 852
PspGI	CCWGG	2 cut(s)	703, 852
PspN4I	GGNNCC	2 cut(s)	663, 927
PstI	CTGCAG	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	20
RruI	TCGCGA	1 cut(s)	802
RsaI	GTAC	4 cut(s)	114, 527, 682, 935
RsaNI	GTAC	4 cut(s)	113, 526, 681, 934
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	2 cut(s)	278, 674
SatI	GCNGC	4 cut(s)	151, 257, 495, 792
Sau3AI	GATC	3 cut(s)	20, 204, 463
ScrFI	CCNGG	3 cut(s)	705, 782, 854
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	4 cut(s)	449, 472, 510, 556
SfcI	CTRYAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	24, 360
SmoI	CTYRAG	2 cut(s)	24, 360
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	3 cut(s)	43, 87, 632
SsiI	CCGC	2 cut(s)	659, 917
SspMI	CTAG	2 cut(s)	282, 470
StyD4I	CCNGG	3 cut(s)	703, 780, 852
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	6 cut(s)	54, 60, 95, 304, 501, 748
TaiI	ACGT	2 cut(s)	686, 799
TasI	AATT	3 cut(s)	43, 87, 632
TfiI	GAWTC	2 cut(s)	118, 785
Tru1I	TTAA	2 cut(s)	278, 674
Tru9I	TTAA	2 cut(s)	278, 674
TscAI	CASTG	2 cut(s)	240, 521
TseFI	GTSAC	2 cut(s)	54, 128
TseI	GCWGC	4 cut(s)	150, 256, 494, 791
Tsp45I	GTSAC	2 cut(s)	54, 128
TspDTI	ATGAA	4 cut(s)	170, 357, 843, 882
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	2 cut(s)	240, 521
Van91I	CCANNNNNTGG	1 cut(s)	70
XagI	CCTNNNNNAGG	1 cut(s)	857
XceI	RCATGY	2 cut(s)	580, 611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	2 cut(s)	282, 470
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.