AT2G41150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003834
Physical Location & Seq
Forward (+)
17153806 .. 17155983
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41150.2

Sequence Viewer

Length: 780 bp
ATGGCGACAATGAGCAAACCCCATAAGTTAAAAGCCACTCCAGGATCTCAAAGACTTGTTCTGTTATGTATAGTCGCAGTTGCATTTCTCCTCCTTTTCACTTCGGTGATCTCCACCGGCGGATTGGCTTTACCGTATCGGACAACCCTAATTGGTTATTTTGTGAGGTCAACTCGAAACAAGACACAGCATAGTTTGTCGGACAAGTACTTGTACTGGGGAAACAGAATCGATTGTCCTGGTAAGAACTGTGAGACCTGTGCCGGTTTGGGTCACCAAGAATCTAGCCTTAGATGTGCCCTTGAAGAAGCCATGTTTCTGAACAGGACTTTTGTAATGCCATCTCGGATGTGCATCAATCCAATACATAACAAGAAGGGTATACTTAATCGATCCAACAATGAAACTAGAGAGGAAAGTTGGGAAGTGAGCTCTTGTGCAATGGAATCATTGTATGATATTGATCTCATCTCTGAGAAAATACCTGTGATCTTGGATGACTCGGAAACATGGCACATAATGCTATCGACGAGTATGAAATTGAAAGAACGTGGGAGTGCGCATGTATATGGGGCAAACAGGCATGAGCTAAATGACTCTAGCGACTTTACAAATCTTTTGCTCATTAACCGAACCGCAAGCCCCCTTGCATGGTTTGTTGAATGCAAGGATCGAGGTAATCGTAGCGACGTCATGCTTCCTTATTCATTTCTCCAGACTATGGCAGCATCAAGATTGAGAGATGCTGCAGAAAAGGTGAAGGAGTTGCACATAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

259

Amino Acids

29.25

Weight (kDa)

8.59

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 693
Acc16I TGCGCA 1 cut(s) 561
AccB7I CCANNNNNTGG 1 cut(s) 721
AccI GTMKAC 1 cut(s) 382
AciI CCGC 2 cut(s) 120, 636
AclWI GGATC 3 cut(s) 52, 387, 678
AcyI GRCGYC 1 cut(s) 690
AfaI GTAC 2 cut(s) 209, 215
AfiI CCNNNNNNNGG 2 cut(s) 651, 721
AgsI TTSAA 3 cut(s) 305, 544, 662
AjnI CCWGG 2 cut(s) 40, 238
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 2 cut(s) 432, 589
AluI AGCT 2 cut(s) 432, 589
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 3 cut(s) 52, 387, 678
ApeKI GCWGC 2 cut(s) 725, 746
AspLEI GCGC 1 cut(s) 562
AsuHPI GGTGA 3 cut(s) 118, 266, 769
BaeGI GKGCMC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 733, 737
BccI CCATC 1 cut(s) 349
BciT130I CCWGG 2 cut(s) 42, 240
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 4 cut(s) 285, 408, 600, 778
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 2 cut(s) 726, 747
BlsI GCNGC 2 cut(s) 727, 748
BmcAI AGTACT 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 42, 240
BmrFI CCNGG 2 cut(s) 42, 240
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 3 cut(s) 363, 733, 737
BmuI ACTGGG 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 157, 189
BpmI CTGGAG 2 cut(s) 24, 698
Bsa29I ATCGAT 2 cut(s) 231, 391
BsaBI GATNNNNATC 2 cut(s) 353, 462
BsaHI GRCGYC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 651, 721
Bse118I RCCGGY 2 cut(s) 116, 263
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 2 cut(s) 353, 462
BseBI CCWGG 2 cut(s) 42, 240
BseCI ATCGAT 2 cut(s) 231, 391
BseGI GGATG 2 cut(s) 354, 502
BseJI GATNNNNATC 2 cut(s) 353, 462
BseLI CCNNNNNNNGG 2 cut(s) 651, 721
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 2 cut(s) 733, 737
BshVI ATCGAT 2 cut(s) 231, 391
BsiHKAI GWGCWC 1 cut(s) 434
BsiSI CCGG 2 cut(s) 117, 264
BslI CCNNNNNNNGG 2 cut(s) 651, 721
BsmAI GTCTC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 668
Bso31I GGTCTC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 301, 434
Bsp143I GATC 6 cut(s) 44, 108, 392, 463, 489, 670
BspACI CCGC 2 cut(s) 120, 636
BspCNI CTCAG 1 cut(s) 466
BspDI ATCGAT 2 cut(s) 231, 391
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 3 cut(s) 52, 387, 678
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 447
BsrFI RCCGGY 2 cut(s) 116, 263
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 2 cut(s) 116, 263
BssMI GATC 6 cut(s) 44, 108, 392, 463, 489, 670
BssNAI GTATAC 1 cut(s) 383
BssNI GRCGYC 1 cut(s) 690
Bst1107I GTATAC 1 cut(s) 383
Bst2UI CCWGG 2 cut(s) 42, 240
Bst4CI ACNGT 2 cut(s) 135, 251
BstACI GRCGYC 1 cut(s) 690
BstAPI GCANNNNNTGC 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 2 cut(s) 290, 474
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 2 cut(s) 354, 502
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 6 cut(s) 47, 111, 395, 466, 492, 673
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 6 cut(s) 44, 108, 392, 463, 489, 670
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 2 cut(s) 42, 240
BstNSI RCATGY 1 cut(s) 566
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 40, 238
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 733, 737
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BstZ17I GTATAC 1 cut(s) 383
Bsu15I ATCGAT 2 cut(s) 231, 391
BsuTUI ATCGAT 2 cut(s) 231, 391
BtsCI GGATG 2 cut(s) 354, 502
Cac8I GCNNGC 1 cut(s) 640
CfoI GCGC 1 cut(s) 562
Cfr10I RCCGGY 2 cut(s) 116, 263
ClaI ATCGAT 2 cut(s) 231, 391
Csp6I GTAC 2 cut(s) 208, 214
CviAII CATG 6 cut(s) 313, 510, 563, 584, 651, 694
CviJI RGCY 7 cut(s) 35, 128, 288, 311, 432, 589, 642
CviKI_1 RGCY 7 cut(s) 35, 128, 288, 311, 432, 589, 642
CviQI GTAC 2 cut(s) 208, 214
DdeI CTNAG 2 cut(s) 290, 474
DpnI GATC 6 cut(s) 46, 110, 394, 465, 491, 672
DpnII GATC 6 cut(s) 44, 108, 392, 463, 489, 670
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 434
Eco31I GGTCTC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 432
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 432
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 40, 238
EcoT38I GRGCYC 1 cut(s) 434
FaeI CATG 6 cut(s) 316, 513, 566, 587, 654, 697
FatI CATG 6 cut(s) 312, 509, 562, 583, 650, 693
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 726, 747
FokI GGATG 2 cut(s) 361, 509
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 726, 747
FspAI RTGCGCAY 1 cut(s) 561
FspBI CTAG 4 cut(s) 285, 408, 600, 778
FspI TGCGCA 1 cut(s) 561
GlaI GCGC 1 cut(s) 561
GluI GCNGC 2 cut(s) 726, 747
GsuI CTGGAG 2 cut(s) 24, 698
HapII CCGG 2 cut(s) 117, 264
HhaI GCGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 6 cut(s) 316, 513, 566, 587, 654, 697
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 5 cut(s) 228, 281, 446, 500, 596
HpaII CCGG 2 cut(s) 117, 264
HphI GGTGA 3 cut(s) 118, 266, 769
Hpy166II GTNNAC 2 cut(s) 171, 383
Hpy188I TCNGA 6 cut(s) 141, 202, 321, 348, 475, 505
Hpy188III TCNNGA 2 cut(s) 715, 732
Hpy8I GTNNAC 2 cut(s) 171, 383
Hpy99I CGWCG 2 cut(s) 532, 692
HpyAV CCTTC 2 cut(s) 370, 754
HpyCH4III ACNGT 2 cut(s) 135, 251
HpyCH4IV ACGT 2 cut(s) 550, 690
HpyCH4V TGCA 7 cut(s) 83, 354, 440, 650, 666, 749, 769
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 2 cut(s) 290, 474
HpySE526I ACGT 2 cut(s) 550, 690
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 6 cut(s) 316, 513, 566, 587, 654, 697
HspAI GCGC 1 cut(s) 560
Kzo9I GATC 6 cut(s) 44, 108, 392, 463, 489, 670
Lsp1109I GCAGC 2 cut(s) 733, 737
LweI GCATC 3 cut(s) 363, 733, 737
MaeI CTAG 4 cut(s) 285, 408, 600, 778
MaeII ACGT 2 cut(s) 550, 690
MaeIII GTNAC 1 cut(s) 272
MalI GATC 6 cut(s) 46, 110, 394, 465, 491, 672
MboI GATC 6 cut(s) 44, 108, 392, 463, 489, 670
MboII GAAGA 1 cut(s) 317
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 301, 434
MluCI AATT 2 cut(s) 150, 539
MlyI GAGTC 2 cut(s) 494, 590
MmeI TCCRAC 2 cut(s) 180, 420
MnlI CCTC 4 cut(s) 101, 159, 406, 668
MseI TTAA 3 cut(s) 29, 387, 627
MslI CAYNNNNRTG 2 cut(s) 104, 567
MspI CCGG 2 cut(s) 117, 264
MspR9I CCNGG 2 cut(s) 42, 240
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 2 cut(s) 42, 240
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 6 cut(s) 44, 108, 392, 463, 489, 670
NlaIII CATG 6 cut(s) 316, 513, 566, 587, 654, 697
NmuCI GTSAC 1 cut(s) 272
NsbI TGCGCA 1 cut(s) 561
NspI RCATGY 1 cut(s) 566
OliI CACNNNNGTG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 679
PctI GAATGC 1 cut(s) 668
PfeI GAWTC 3 cut(s) 228, 281, 446
PflMI CCANNNNNTGG 1 cut(s) 721
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 2 cut(s) 727, 748
PleI GAGTC 2 cut(s) 494, 590
PpsI GAGTC 2 cut(s) 494, 590
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 40, 238
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 40, 238
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 2 cut(s) 209, 215
RsaNI GTAC 2 cut(s) 208, 214
RseI CAYNNNNRTG 2 cut(s) 104, 567
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 3 cut(s) 29, 387, 627
SatI GCNGC 2 cut(s) 726, 747
Sau3AI GATC 6 cut(s) 44, 108, 392, 463, 489, 670
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 2 cut(s) 494, 590
ScrFI CCNGG 2 cut(s) 42, 240
SduI GDGCHC 2 cut(s) 301, 434
SetI ASST 9 cut(s) 170, 260, 434, 487, 553, 591, 679, 693, 759
SfaNI GCATC 3 cut(s) 363, 733, 737
SfcI CTRYAG 1 cut(s) 747
SgrAI CRCCGGYG 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 104, 567
Sse9I AATT 2 cut(s) 150, 539
SsiI CCGC 2 cut(s) 120, 636
SspMI CTAG 4 cut(s) 285, 408, 600, 778
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 40, 238
TaaI ACNGT 2 cut(s) 135, 251
TaiI ACGT 2 cut(s) 553, 693
TaqI TCGA 5 cut(s) 175, 231, 391, 527, 673
TasI AATT 2 cut(s) 150, 539
TatI WGTACW 2 cut(s) 207, 213
TfiI GAWTC 3 cut(s) 228, 281, 446
Tru1I TTAA 3 cut(s) 29, 387, 627
Tru9I TTAA 3 cut(s) 29, 387, 627
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 2 cut(s) 725, 746
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 417, 551, 696
Van91I CCANNNNNTGG 1 cut(s) 721
XceI RCATGY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 382
XspI CTAG 4 cut(s) 285, 408, 600, 778
ZraI GACGTC 1 cut(s) 691
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.