Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003834

Physical Location & Seq

Genomic Coordinates Reverse (-)

9253557 .. 9258027

Gene Structure 4471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCTGTCTCCGGTGGAATCCAGAAGAACCCCAAAGCCCAAATCTGGGCCCAGTTCCCCCATCGTGTTCCTGGCCACCTGCATTGCCGCAATTGCTCTGGTTTTCCTCTACACCTATCTCAATTCCACCAGCGACTTCTCTTCTTCCTCCCTCAAAGCCCTAGAATCTGTTCCCAGTTTGATCAGCCAGCGCCACGGCAAGTACCTCTACTGGGGCACCCGAATCGACTGCCCCGGCAAGCACTGCCACTCCTGTGAGGGCCTTGCCCACCAGGAGTCCAGTCTCCGCTGTGCTCTCGAAGAAGCCCTCTTTCTCCAAAGGACTTTTGTAATGCCCTCCAGAATGTGCATCAATCCCATACACAACAAGAAAGGGATTTTTCAGCACTCTGACAACGCAAGTTCAGAAGAAAATTGGAATGCAAACTCTTGTTCCATGGACTCTTTGTATGATATCGGCCTCATATCGGAGACTGTTCCAGTAATTTTAGACAATTCAAAAATGTGGTATGAGGTGCTAACAACAAGCATGAAGTTAGGAGATAGAGGAGTTTCTCATGTGGAGCGAGTTACTCGTGTTGACCTCAAAAACACTAGTTTCTCAAATCTTTTGCTCATAAACAGAACTGCAAGCCCTCTTTCATGGTTTGCAGAGTGCAAGAATCGAAACAACCGTAGTGCTTTAATTTTGCCCTACTCTTTTCTCCCCTCAATGGCAGCAAAGAAATTGCGGAATGCAGCTGACAAGATTAAGGAAATCCTTGGTGATTATGATGCCATTCATGTTCGTCGTGGAGATAGACTTAAGACCAGGAGGGACAGGAATGGTGTTGAGAGGACCCTATCACCTCATCTGGACAGGGACACACGCCCTGAGTTTATTCTACGCAGAATTGAAAAATGGGTCCCACCTGGACGAACTCTTTATATTGCTTCAAATGAAAGGACACCAGGATTCTTTTCACCGCTCTCCATCAGATACAAATTGGCATACTCATCAAATTATAGCCGCATATTGGAAACCTTGATTGAGAATAATTACCAATTGTTCATGATTGAAAGGCTTATCCTGATGGGTGCCAAAACATTCATTAGAACATTTAAAGAAGATGATACAGATCTCCATCTTACAGACGACCCCAAGAAGAACATCAAAAACTGGCAAATACCAGTCTACACCATGGATGAAAAGGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

400

Amino Acids

45.68

Weight (kDa)

9.32

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41150 AT2G41150 AT3G56750
fragaria_vesca	FvH4_2g10400 FvH4_2g10400 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880
malus_domestica	MD12G1095500.v1.1 MD14G1091500.v1.1
prunus_persica	Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1
pyrus_communis	pycom12g08230 pycom12g08240 pycom14g08220
rosa_chinensis	RchiOBHm_Chr1g0339511
rosa_laevigata	RLG00000029233
rosa_multiflora	Rmu_sc0010554.1_g000003 Rmu_sc0026504.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313480
rosa_rugosa	Rorug01G0141600.1
rosa_samantha	Rh1AG158800 Rh1CG148100
rosa_wichuraiana	Rw1G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	2 cut(s)	215, 1076
AccBSI	CCGCTC	1 cut(s)	967
AccI	GTMKAC	1 cut(s)	1173
AciI	CCGC	5 cut(s)	87, 286, 730, 965, 1009
AcoI	YGGCCR	1 cut(s)	72
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	6 cut(s)	44, 45, 211, 466, 712, 1015
AflII	CTTAAG	1 cut(s)	803
AgsI	TTSAA	4 cut(s)	498, 896, 936, 1058
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	5 cut(s)	69, 270, 809, 910, 949
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	1 cut(s)	740
AluI	AGCT	1 cut(s)	740
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	3 cut(s)	12, 287, 464
AoxI	GGCC	4 cut(s)	47, 72, 259, 457
ApaI	GGGCCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	716, 737
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	5 cut(s)	47, 48, 259, 837, 904
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	776, 837, 954
AvaII	GGWCC	2 cut(s)	837, 904
BaeGI	GKGCMC	2 cut(s)	51, 218
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	2 cut(s)	215, 1076
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	728, 749
BccI	CCATC	4 cut(s)	68, 980, 1066, 1131
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	4 cut(s)	205, 210, 239, 244
BciT130I	CCWGG	5 cut(s)	71, 272, 811, 912, 951
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	12, 287, 464
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	161, 594
BfoI	RGCGCY	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	1117
BisI	GCNGC	4 cut(s)	87, 717, 738, 1009
BlsI	GCNGC	4 cut(s)	88, 718, 739, 1010
Bme1390I	CCNGG	6 cut(s)	71, 234, 272, 811, 912, 951
Bme18I	GGWCC	2 cut(s)	837, 904
BmgT120I	GGNCC	5 cut(s)	47, 48, 259, 837, 904
BmiI	GGNNCC	6 cut(s)	49, 217, 839, 905, 906, 1078
BmrFI	CCNGG	6 cut(s)	71, 234, 272, 811, 912, 951
BmrI	ACTGGG	3 cut(s)	45, 168, 220
BmsI	GCATC	2 cut(s)	357, 763
BmuI	ACTGGG	3 cut(s)	45, 168, 220
BpmI	CTGGAG	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	234
BsaBI	GATNNNNATC	2 cut(s)	1116, 1122
BsaJI	CCNNGG	5 cut(s)	193, 232, 435, 760, 1179
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 45, 211, 466, 712, 1015
Bse1I	ACTGG	7 cut(s)	51, 174, 215, 279, 479, 1163, 1169
Bse3DI	GCAATG	1 cut(s)	81
Bse8I	GATNNNNATC	2 cut(s)	1116, 1122
BseBI	CCWGG	5 cut(s)	71, 272, 811, 912, 951
BseDI	CCNNGG	5 cut(s)	193, 232, 435, 760, 1179
BseGI	GGATG	1 cut(s)	1189
BseJI	GATNNNNATC	2 cut(s)	1116, 1122
BseLI	CCNNNNNNNGG	6 cut(s)	44, 45, 211, 466, 712, 1015
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	7 cut(s)	51, 174, 215, 279, 479, 1163, 1169
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	2 cut(s)	51, 218
BseXI	GCAGC	2 cut(s)	728, 749
BshFI	GGCC	4 cut(s)	49, 74, 261, 459
BshNI	GGYRCC	2 cut(s)	215, 1076
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	11, 234
BslFI	GGGAC	3 cut(s)	830, 875, 890
BslI	CCNNNNNNNGG	6 cut(s)	44, 45, 211, 466, 712, 1015
BsmAI	GTCTC	3 cut(s)	12, 287, 464
BsmFI	GGGAC	3 cut(s)	830, 875, 890
BsmI	GAATGC	2 cut(s)	424, 739
BsnI	GGCC	4 cut(s)	49, 74, 261, 459
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	51, 218, 295
Bsp143I	GATC	2 cut(s)	180, 1117
Bsp19I	CCATGG	2 cut(s)	435, 1179
BspACI	CCGC	5 cut(s)	87, 286, 730, 965, 1009
BspANI	GGCC	4 cut(s)	49, 74, 261, 459
BspCNI	CTCAG	1 cut(s)	865
BspHI	TCATGA	1 cut(s)	1050
BspLI	GGNNCC	6 cut(s)	49, 217, 839, 905, 906, 1078
BspMI	ACCTGC	1 cut(s)	86
BspT107I	GGYRCC	2 cut(s)	215, 1076
BspTI	CTTAAG	1 cut(s)	803
BsrBI	CCGCTC	1 cut(s)	967
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	7 cut(s)	51, 174, 215, 279, 479, 1163, 1169
BssECI	CCNNGG	5 cut(s)	193, 232, 435, 760, 1179
BssMI	GATC	2 cut(s)	180, 1117
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	3 cut(s)	435, 760, 1179
Bst2BI	CACGAG	1 cut(s)	573
Bst2UI	CCWGG	5 cut(s)	71, 272, 811, 912, 951
Bst4CI	ACNGT	2 cut(s)	475, 674
Bst6I	CTCTTC	1 cut(s)	145
BstAFI	CTTAAG	1 cut(s)	803
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	3 cut(s)	188, 239, 631
BstDEI	CTNAG	1 cut(s)	873
BstDSI	CCRYGG	3 cut(s)	193, 435, 1179
BstF5I	GGATG	1 cut(s)	1189
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	183, 1120
BstMAI	GTCTC	3 cut(s)	12, 287, 464
BstMBI	GATC	2 cut(s)	180, 1117
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 243
BstNI	CCWGG	5 cut(s)	71, 272, 811, 912, 951
BstSCI	CCNGG	6 cut(s)	69, 232, 270, 809, 910, 949
BstSLI	GKGCMC	2 cut(s)	51, 218
BstV1I	GCAGC	2 cut(s)	728, 749
BstX2I	RGATCY	1 cut(s)	1117
BstYI	RGATCY	1 cut(s)	1117
BsuRI	GGCC	4 cut(s)	49, 74, 261, 459
BtgI	CCRYGG	3 cut(s)	193, 435, 1179
BtsCI	GGATG	1 cut(s)	1189
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	188, 239, 631
CciI	TCATGA	1 cut(s)	1050
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	5 cut(s)	47, 48, 259, 837, 904
Csp6I	GTAC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	7 cut(s)	436, 529, 557, 642, 782, 1051, 1180
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	873
DpnI	GATC	2 cut(s)	182, 1119
DpnII	GATC	2 cut(s)	180, 1117
DraI	TTTAAA	1 cut(s)	1102
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco130I	CCWWGG	3 cut(s)	435, 760, 1179
Eco24I	GRGCYC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	454
Eco47I	GGWCC	2 cut(s)	837, 904
EcoO109I	RGGNCCY	3 cut(s)	259, 837, 904
EcoRII	CCWGG	5 cut(s)	69, 270, 809, 910, 949
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	3 cut(s)	435, 760, 1179
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	3 cut(s)	435, 760, 1179
FaeI	CATG	7 cut(s)	439, 532, 560, 645, 785, 1054, 1183
FaqI	GGGAC	3 cut(s)	830, 875, 890
FatI	CATG	7 cut(s)	435, 528, 556, 641, 781, 1050, 1179
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	1173
Fnu4HI	GCNGC	4 cut(s)	87, 717, 738, 1009
FokI	GGATG	1 cut(s)	1196
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	87, 717, 738, 1009
FspBI	CTAG	2 cut(s)	161, 594
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	4 cut(s)	87, 717, 738, 1009
GsuI	CTGGAG	1 cut(s)	322
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	49, 74, 261, 459
HapII	CCGG	2 cut(s)	11, 234
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	7 cut(s)	439, 532, 560, 645, 785, 1054, 1183
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	7 cut(s)	17, 164, 222, 275, 440, 661, 954
HpaII	CCGG	2 cut(s)	11, 234
HphI	GGTGA	3 cut(s)	776, 837, 954
Hpy166II	GTNNAC	2 cut(s)	580, 1174
Hpy188I	TCNGA	4 cut(s)	391, 406, 469, 977
Hpy188III	TCNNGA	6 cut(s)	21, 296, 339, 854, 1051, 1069
Hpy8I	GTNNAC	2 cut(s)	580, 1174
Hpy99I	CGWCG	1 cut(s)	792
HpyAV	CCTTC	1 cut(s)	1188
HpyCH4III	ACNGT	2 cut(s)	475, 674
HpyCH4V	TGCA	7 cut(s)	81, 348, 422, 629, 650, 657, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 243
HpyF3I	CTNAG	1 cut(s)	873
Hsp92II	CATG	7 cut(s)	439, 532, 560, 645, 785, 1054, 1183
HspAI	GCGC	1 cut(s)	190
KflI	GGGWCCC	1 cut(s)	904
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	180, 1117
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	2 cut(s)	728, 749
LweI	GCATC	2 cut(s)	357, 763
MaeI	CTAG	2 cut(s)	161, 594
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	2 cut(s)	182, 1119
MbiI	CCGCTC	1 cut(s)	967
MboI	GATC	2 cut(s)	180, 1117
MboII	GAAGA	7 cut(s)	36, 132, 135, 311, 419, 1118, 1156
MfeI	CAATTG	2 cut(s)	90, 1043
MflI	RGATCY	1 cut(s)	1117
MhlI	GDGCHC	3 cut(s)	51, 218, 295
MlsI	TGGCCA	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	284, 434
Mox20I	TGGCCA	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	4 cut(s)	683, 750, 804, 1101
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	2 cut(s)	288, 740
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	2 cut(s)	11, 234
MspR9I	CCNGG	6 cut(s)	71, 234, 272, 811, 912, 951
MunI	CAATTG	2 cut(s)	90, 1043
Mva1269I	GAATGC	2 cut(s)	424, 739
MvaI	CCWGG	5 cut(s)	71, 272, 811, 912, 951
MwoI	GCNNNNNNNGC	2 cut(s)	92, 243
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	2 cut(s)	435, 1179
NdeII	GATC	2 cut(s)	180, 1117
NlaIII	CATG	7 cut(s)	439, 532, 560, 645, 785, 1054, 1183
NlaIV	GGNNCC	6 cut(s)	49, 217, 839, 905, 906, 1078
OliI	CACNNNNGTG	1 cut(s)	252
PagI	TCATGA	1 cut(s)	1050
PaqCI	CACCTGC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PctI	GAATGC	2 cut(s)	424, 739
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	5 cut(s)	17, 164, 222, 661, 954
PkrI	GCNGC	4 cut(s)	88, 718, 739, 1010
PleI	GAGTC	2 cut(s)	283, 434
PpsI	GAGTC	2 cut(s)	283, 434
PpuMI	RGGWCCY	2 cut(s)	837, 904
Psp5II	RGGWCCY	2 cut(s)	837, 904
Psp6I	CCWGG	5 cut(s)	69, 270, 809, 910, 949
PspGI	CCWGG	5 cut(s)	69, 270, 809, 910, 949
PspN4I	GGNNCC	6 cut(s)	49, 217, 839, 905, 906, 1078
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	5 cut(s)	47, 48, 259, 837, 904
PspPPI	RGGWCCY	2 cut(s)	837, 904
PsuI	RGATCY	1 cut(s)	1117
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	4 cut(s)	683, 750, 804, 1101
SatI	GCNGC	4 cut(s)	87, 717, 738, 1009
Sau3AI	GATC	2 cut(s)	180, 1117
Sau96I	GGNCC	5 cut(s)	47, 48, 259, 837, 904
SchI	GAGTC	2 cut(s)	284, 434
ScrFI	CCNGG	6 cut(s)	71, 234, 272, 811, 912, 951
SduI	GDGCHC	3 cut(s)	51, 218, 295
SfaNI	GCATC	2 cut(s)	357, 763
SinI	GGWCC	2 cut(s)	837, 904
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SpeI	ACTAGT	1 cut(s)	593
SsiI	CCGC	5 cut(s)	87, 286, 730, 965, 1009
SspMI	CTAG	2 cut(s)	161, 594
StyD4I	CCNGG	6 cut(s)	69, 232, 270, 809, 910, 949
StyI	CCWWGG	3 cut(s)	435, 760, 1179
TaaI	ACNGT	2 cut(s)	475, 674
TaqI	TCGA	3 cut(s)	225, 297, 664
TauI	GCSGC	2 cut(s)	89, 1011
TfiI	GAWTC	5 cut(s)	17, 164, 222, 661, 954
Tru1I	TTAA	4 cut(s)	683, 750, 804, 1101
Tru9I	TTAA	4 cut(s)	683, 750, 804, 1101
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	2 cut(s)	716, 737
TspDTI	ATGAA	7 cut(s)	545, 630, 770, 954, 1039, 1078, 1200
TspRI	CASTG	1 cut(s)	248
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	837, 904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	1173
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	161, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.