Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003834

Physical Location & Seq

Genomic Coordinates Reverse (-)

15750050 .. 15755674

Gene Structure 5625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G101700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCATTTCACAGAACCCTAAAGTCCAAGTCAGGACCCAGTTCCTCAATCATCTTCCCTGCCTTCTGCATAGCTGCAATTGTTCTCCTCTTCTTCTTTGCCTCTCTCATTTCCACAAACCCTGTATCCTCCCCAGAAGGCCTAGAAAGTGTGACCAAGTCCGAGAACAATGACCAGAATGACCAGAATGGCCACGAGAAGTTCCTCTACTGGGGTAACAGAATTGATTGCCCTGGAAGGCACTGTGAATCCTGTGAAGGTCTGGGCCACCAGGAGTCCAGCCTCCGGTGTGCTCTTGAAGAGGCCATGTTCCTTAAGAGAACCTTGGTAATGCCTTCCAGAATGTGTATCAACCCAATACACAATAAGAAAGGGATCCTTCGTCGCTCAAATACTGCAAATTCAGAAGAAACGTGGGCAGCAAAGTCTTGTTCCATGGACTCTTTGTATGATATGGACCTCATATCGGATACTGTACCAGTAATTTTAGACAATTCAAAACTGTGGTATCAGGTGCTAACAACAAGTATGAAGTTGGGAGCTAGAGGAGTTGCTCATGTGGAACGAGTTAGTCATGTTGATCTCAAAGAGAACAGTCGTTTCTCAAATCTTTTGCTGATAAACAGAACTGCAAGCCCTCTGTCATGGTTTATGGAGTGCAAGGATCGAAATGACCGTAGTGCTATACTTTTGCCATACTCCTTTCTCCCCTCAATGGCAGCAAAGAACTTAAGGAACGTAGCTGATAAGATTAAGGCACTCCTTGGTGATTATGATGCAATTCATGTTCGTCGTGGCGATAAAATTAAGACCAGGAAGGACAGGTTTGGTGTTGACAGGACCCTGCATCCTCATCTGGACAGGGATACACGGCCAGAGTTTATTCTCCACAGAATTGAAAAATGGGTCCCACCTGGACGAACTCTTTTTATTGCTTCAAATGAAAGGACGCCAGGATTTTTTTCACCTCTCACAGTCAGATACAAATTGGCATACTCATCAAACTTTAGCCACATTTTGGATCCCATGATTGGAAATAACTACCAATTGTTCATGGTTGAAAGGCTTATCATGATGGGTGCTAAAAAATTCATTAGAACATTCAAAGAAGACGATACATATTTCAGTCTTACCGATGACCCGAAGAAGAACTCCAAGATATGGAAAATGCCAGTCTCTACCATGGATGAAGATGGCAAGCAAACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

404

Amino Acids

46.03

Weight (kDa)

9.13

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41150 AT2G41150 AT3G56750
fragaria_vesca	FvH4_2g10400 FvH4_2g10400 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880
malus_domestica	MD12G1095500.v1.1 MD14G1091500.v1.1
prunus_persica	Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1
pyrus_communis	pycom12g08230 pycom12g08240 pycom14g08220
rosa_chinensis	RchiOBHm_Chr1g0339511
rosa_laevigata	RLG00000029233
rosa_multiflora	Rmu_sc0010554.1_g000003 Rmu_sc0026504.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313480
rosa_rugosa	Rorug01G0141600.1
rosa_samantha	Rh1AG158800 Rh1CG148100
rosa_wichuraiana	Rw1G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1018, 1161
AclWI	GGATC	5 cut(s)	370, 383, 672, 1016, 1029
AcoI	YGGCCR	2 cut(s)	190, 872
AcsI	RAATTY	2 cut(s)	400, 1088
AcyI	GRCGYC	1 cut(s)	950
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	7 cut(s)	211, 285, 466, 715, 1018, 1031, 1161
AflII	CTTAAG	2 cut(s)	314, 730
AgsI	TTSAA	6 cut(s)	299, 498, 899, 939, 1061, 1105
AjnI	CCWGG	5 cut(s)	232, 270, 812, 913, 952
AluBI	AGCT	3 cut(s)	74, 542, 743
AluI	AGCT	3 cut(s)	74, 542, 743
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	1180
AlwI	GGATC	5 cut(s)	370, 383, 672, 1016, 1029
AoxI	GGCC	5 cut(s)	139, 190, 265, 303, 872
ApeKI	GCWGC	3 cut(s)	74, 419, 719
ApoI	RAATTY	2 cut(s)	400, 1088
AspS9I	GGNCC	5 cut(s)	35, 265, 457, 840, 907
AsuHPI	GGTGA	2 cut(s)	779, 957
AvaII	GGWCC	4 cut(s)	35, 457, 840, 907
BaeI	ACNNNNGTAYC	2 cut(s)	491, 524
BalI	TGGCCA	1 cut(s)	192
BamHI	GGATCC	2 cut(s)	375, 1021
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	1116
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	3 cut(s)	61, 431, 731
BccI	CCATC	2 cut(s)	1069, 1187
BceAI	ACGGC	1 cut(s)	887
BciT130I	CCWGG	5 cut(s)	234, 272, 814, 915, 954
BciVI	GTATCC	3 cut(s)	136, 463, 859
BcoDI	GTCTC	1 cut(s)	1180
BfaI	CTAG	2 cut(s)	143, 543
BfrI	CTTAAG	2 cut(s)	314, 730
BfuI	GTATCC	3 cut(s)	136, 463, 859
BisI	GCNGC	3 cut(s)	75, 420, 720
BlsI	GCNGC	3 cut(s)	76, 421, 721
Bme1390I	CCNGG	5 cut(s)	234, 272, 814, 915, 954
Bme18I	GGWCC	4 cut(s)	35, 457, 840, 907
BmgT120I	GGNCC	5 cut(s)	35, 265, 457, 840, 907
BmiI	GGNNCC	6 cut(s)	37, 377, 842, 908, 909, 1023
BmrFI	CCNGG	5 cut(s)	234, 272, 814, 915, 954
BmrI	ACTGGG	2 cut(s)	33, 220
BmsI	GCATC	2 cut(s)	766, 856
BmuI	ACTGGG	2 cut(s)	33, 220
BpiI	GAAGAC	1 cut(s)	1116
BsaHI	GRCGYC	1 cut(s)	950
BsaJI	CCNNGG	5 cut(s)	232, 324, 435, 763, 1182
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	7 cut(s)	211, 285, 466, 715, 1018, 1031, 1161
Bse1I	ACTGG	4 cut(s)	39, 215, 479, 1172
BseBI	CCWGG	5 cut(s)	234, 272, 814, 915, 954
BseDI	CCNNGG	5 cut(s)	232, 324, 435, 763, 1182
BseGI	GGATG	2 cut(s)	847, 1192
BseLI	CCNNNNNNNGG	7 cut(s)	211, 285, 466, 715, 1018, 1031, 1161
BseNI	ACTGG	4 cut(s)	39, 215, 479, 1172
BseRI	GAGGAG	2 cut(s)	77, 561
BseXI	GCAGC	3 cut(s)	61, 431, 731
BshFI	GGCC	5 cut(s)	141, 192, 267, 305, 874
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	7 cut(s)	211, 285, 466, 715, 1018, 1031, 1161
BsmAI	GTCTC	1 cut(s)	1180
BsmFI	GGGAC	1 cut(s)	893
BsnI	GGCC	5 cut(s)	141, 192, 267, 305, 874
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	375, 580, 664, 1021
Bsp19I	CCATGG	2 cut(s)	435, 1182
BspANI	GGCC	5 cut(s)	141, 192, 267, 305, 874
BspHI	TCATGA	1 cut(s)	1071
BspLI	GGNNCC	6 cut(s)	37, 377, 842, 908, 909, 1023
BspPI	GGATC	5 cut(s)	370, 383, 672, 1016, 1029
BspTI	CTTAAG	2 cut(s)	314, 730
BsrI	ACTGG	4 cut(s)	39, 215, 479, 1172
BssECI	CCNNGG	5 cut(s)	232, 324, 435, 763, 1182
BssMI	GATC	4 cut(s)	375, 580, 664, 1021
BssNI	GRCGYC	1 cut(s)	950
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	4 cut(s)	324, 435, 763, 1182
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	5 cut(s)	234, 272, 814, 915, 954
Bst4CI	ACNGT	6 cut(s)	245, 475, 504, 596, 677, 976
Bst6I	CTCTTC	2 cut(s)	95, 294
BstACI	GRCGYC	1 cut(s)	950
BstAFI	CTTAAG	2 cut(s)	314, 730
BstC8I	GCNNGC	2 cut(s)	634, 1199
BstDSI	CCRYGG	2 cut(s)	435, 1182
BstF5I	GGATG	2 cut(s)	847, 1192
BstKTI	GATC	4 cut(s)	378, 583, 667, 1024
BstMAI	GTCTC	1 cut(s)	1180
BstMBI	GATC	4 cut(s)	375, 580, 664, 1021
BstNI	CCWGG	5 cut(s)	234, 272, 814, 915, 954
BstSCI	CCNGG	5 cut(s)	232, 270, 812, 913, 952
BstV1I	GCAGC	3 cut(s)	61, 431, 731
BstV2I	GAAGAC	1 cut(s)	1116
BstX2I	RGATCY	2 cut(s)	375, 1021
BstYI	RGATCY	2 cut(s)	375, 1021
BsuI	GTATCC	3 cut(s)	136, 463, 859
BsuRI	GGCC	5 cut(s)	141, 192, 267, 305, 874
BtgI	CCRYGG	2 cut(s)	435, 1182
BtsCI	GGATG	2 cut(s)	847, 1192
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	634, 1199
CciI	TCATGA	1 cut(s)	1071
Cfr13I	GGNCC	5 cut(s)	35, 265, 457, 840, 907
CseI	GACGC	1 cut(s)	958
Csp6I	GTAC	1 cut(s)	476
CviQI	GTAC	1 cut(s)	476
DpnI	GATC	4 cut(s)	377, 582, 666, 1023
DpnII	GATC	4 cut(s)	375, 580, 664, 1021
EaeI	YGGCCR	2 cut(s)	190, 872
Eam1104I	CTCTTC	2 cut(s)	95, 294
EarI	CTCTTC	2 cut(s)	95, 294
Eco130I	CCWWGG	4 cut(s)	324, 435, 763, 1182
Eco147I	AGGCCT	1 cut(s)	141
Eco47I	GGWCC	4 cut(s)	35, 457, 840, 907
EcoO109I	RGGNCCY	3 cut(s)	35, 840, 907
EcoRII	CCWGG	5 cut(s)	232, 270, 812, 913, 952
EcoT14I	CCWWGG	4 cut(s)	324, 435, 763, 1182
ErhI	CCWWGG	4 cut(s)	324, 435, 763, 1182
FalI	AAGNNNNNCTT	4 cut(s)	308, 340, 363, 395
FaqI	GGGAC	1 cut(s)	893
Fnu4HI	GCNGC	3 cut(s)	75, 420, 720
FokI	GGATG	2 cut(s)	834, 1199
Fsp4HI	GCNGC	3 cut(s)	75, 420, 720
FspBI	CTAG	2 cut(s)	143, 543
GluI	GCNGC	3 cut(s)	75, 420, 720
HaeIII	GGCC	5 cut(s)	141, 192, 267, 305, 874
HapII	CCGG	1 cut(s)	286
HgaI	GACGC	1 cut(s)	958
Hin1I	GRCGYC	1 cut(s)	950
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	3 cut(s)	248, 275, 440
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	2 cut(s)	779, 957
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	4 cut(s)	163, 406, 469, 980
Hpy188III	TCNNGA	5 cut(s)	33, 296, 339, 857, 1072
Hpy8I	GTNNAC	1 cut(s)	835
Hpy99I	CGWCG	2 cut(s)	387, 795
HpyAV	CCTTC	7 cut(s)	73, 131, 231, 251, 345, 389, 811
HpyCH4III	ACNGT	6 cut(s)	245, 475, 504, 596, 677, 976
HpyCH4IV	ACGT	2 cut(s)	413, 738
HpyCH4V	TGCA	7 cut(s)	69, 77, 398, 632, 660, 779, 847
HpySE526I	ACGT	2 cut(s)	413, 738
Hsp92I	GRCGYC	1 cut(s)	950
KflI	GGGWCCC	1 cut(s)	907
Kzo9I	GATC	4 cut(s)	375, 580, 664, 1021
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	3 cut(s)	61, 431, 731
LweI	GCATC	2 cut(s)	766, 856
MaeI	CTAG	2 cut(s)	143, 543
MaeII	ACGT	2 cut(s)	413, 738
MaeIII	GTNAC	2 cut(s)	151, 215
MalI	GATC	4 cut(s)	377, 582, 666, 1023
MboI	GATC	4 cut(s)	375, 580, 664, 1021
MboII	GAAGA	9 cut(s)	46, 82, 85, 311, 419, 1121, 1156, 1159, 1202
MfeI	CAATTG	2 cut(s)	78, 1046
MflI	RGATCY	2 cut(s)	375, 1021
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	192
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	284, 434
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	4 cut(s)	315, 731, 753, 807
Msp20I	TGGCCA	1 cut(s)	192
MspCI	CTTAAG	2 cut(s)	314, 730
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	5 cut(s)	234, 272, 814, 915, 954
MunI	CAATTG	2 cut(s)	78, 1046
MvaI	CCWGG	5 cut(s)	234, 272, 814, 915, 954
NcoI	CCATGG	2 cut(s)	435, 1182
NdeII	GATC	4 cut(s)	375, 580, 664, 1021
NlaIV	GGNNCC	6 cut(s)	37, 377, 842, 908, 909, 1023
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	1071
PceI	AGGCCT	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	157
PflMI	CCANNNNNTGG	2 cut(s)	1018, 1161
PkrI	GCNGC	3 cut(s)	76, 421, 721
PleI	GAGTC	2 cut(s)	283, 434
PpsI	GAGTC	2 cut(s)	283, 434
PpuMI	RGGWCCY	3 cut(s)	35, 840, 907
Psp5II	RGGWCCY	3 cut(s)	35, 840, 907
Psp6I	CCWGG	5 cut(s)	232, 270, 812, 913, 952
PspGI	CCWGG	5 cut(s)	232, 270, 812, 913, 952
PspN4I	GGNNCC	6 cut(s)	37, 377, 842, 908, 909, 1023
PspPI	GGNCC	5 cut(s)	35, 265, 457, 840, 907
PspPPI	RGGWCCY	3 cut(s)	35, 840, 907
PsuI	RGATCY	2 cut(s)	375, 1021
PsyI	GACNNNGTC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
SaqAI	TTAA	4 cut(s)	315, 731, 753, 807
SatI	GCNGC	3 cut(s)	75, 420, 720
Sau3AI	GATC	4 cut(s)	375, 580, 664, 1021
Sau96I	GGNCC	5 cut(s)	35, 265, 457, 840, 907
SchI	GAGTC	2 cut(s)	284, 434
ScrFI	CCNGG	5 cut(s)	234, 272, 814, 915, 954
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	766, 856
SinI	GGWCC	4 cut(s)	35, 457, 840, 907
SmlI	CTYRAG	2 cut(s)	314, 730
SmoI	CTYRAG	2 cut(s)	314, 730
SseBI	AGGCCT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	143, 543
StuI	AGGCCT	1 cut(s)	141
StyD4I	CCNGG	5 cut(s)	232, 270, 812, 913, 952
StyI	CCWWGG	4 cut(s)	324, 435, 763, 1182
TaaI	ACNGT	6 cut(s)	245, 475, 504, 596, 677, 976
TaiI	ACGT	2 cut(s)	416, 741
TaqI	TCGA	1 cut(s)	667
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	4 cut(s)	315, 731, 753, 807
Tru9I	TTAA	4 cut(s)	315, 731, 753, 807
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	74, 419, 719
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	6 cut(s)	545, 773, 957, 1042, 1081, 1203
TspRI	CASTG	1 cut(s)	248
Tth111I	GACNNNGTC	1 cut(s)	157
Van91I	CCANNNNNTGG	2 cut(s)	1018, 1161
Vha464I	CTTAAG	2 cut(s)	314, 730
VpaK11BI	GGWCC	4 cut(s)	35, 457, 840, 907
XapI	RAATTY	2 cut(s)	400, 1088
XspI	CTAG	2 cut(s)	143, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.