AT3G56750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003834
Physical Location & Seq
Reverse (-)
21018089 .. 21020453
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56750.1

Sequence Viewer

Length: 1212 bp
ATGGCGACAATGAGCAAAGCTCAAAGGACCAAACCCACTTCTGGATCTCAGCGTCTTGTTCTGTTCTGTATAGTTGTGTTCTCATTCCTCCTCCTCTTCTCTTCGGTGATCTCCACCGGCAAATTGGGATTGCCTTATCAACAAACCCTAATCGACTATTTCGTGTGGTCTCCTCGTGGTAAGAGACAGCATTCGTTGTCGGAGAAGTACTTGTATTGGGGAAACAGAATCGATTGTCCTGGCAAAAACTGCGAGACCTGTGCTGGCTTGGGTCACCAAGAATCTAGCCTCAGGTGTGCACTTGAAGAAGCCATGTTTCTTAACAGGACCTTTGTAATGCCTTCTGGAATGTGCATAAATCCAATACATAATAAGAAAGGTATACTCAATCGATCTGATAACAAAACTACAGAGGAAGGTTGGCTTGGGAGCTCTTGTGCAATGGACTCATTGTATGACATTGACCTCATATCTGAGAAGATACCGGTGATATTAGATGACTCTAAGACATGGCATATTGTTCTATCCACAAGTATGAAGTTGGGAGAAAGAGGGATTGCACATGTTAGTGGAGTCACTCGGCATAGGCTTAAAGAGAGTCACTACTCAAATCTCTTGATCATTAACCGAACCGCAAGTCCTCTTGCATGGTTCGTTGAGTGCAAAGATAGAAGCAATCGTAGCGCTGTCATGCTTCCTTATTCATTTCTCCCTAATATGGCAGCTGCAAAATTGAGAAACGCCGCAGAAAAGATAAAAGCACAACTTGGTGATTATGATGCCATCCACGTTCGTCGTGGGGACAAACTGAAAACCAGAAAAGACAGATTTGGAGTTGAAAGGATTCAGTTTCCTCATCTAGACAGAGATACGCGCCCTGAGTTTATCCTTCGCAGGATAGAGAAGCGGATCCCAAGAGGAAGGACTCTTTTTATTGGTTCTAATGAGAGGAAGCCTGGTTTTTTCTCTCCTCTCGCGGTCAGGTACAAACTGGCTTACTCATCGAACTTTAGCGAGATTCTGGATCCTATAATCGAGAATAATTACCAGTTATTCATGATGGAGAGACTGGTAATGATGGGAGCCAAAACATACTTCAAAACATTCAAAGAGTACGAAACAGATCTCACCTTAACTGATGATCCTAAGAAGAATAAGAACTGGGAAATACCAGTATACACCATGGATGAAAGAAGAGAAGAAGCAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

403

Amino Acids

46.4

Weight (kDa)

9.43

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 382, 1176
AccII CGCG 2 cut(s) 874, 977
AciI CCGC 4 cut(s) 633, 744, 907, 977
AclWI GGATC 6 cut(s) 52, 904, 917, 1019, 1032, 1136
AfaI GTAC 3 cut(s) 209, 986, 1115
AfeI AGCGCT 1 cut(s) 685
AfiI CCNNNNNNNGG 2 cut(s) 41, 718
AflIII ACRYGT 1 cut(s) 562
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 4 cut(s) 305, 839, 1099, 1108
AjnI CCWGG 2 cut(s) 238, 955
AjuI GAANNNNNNNTTGG 4 cut(s) 408, 440, 1079, 1111
AloI GAACNNNNNNTCC 2 cut(s) 622, 654
AluBI AGCT 4 cut(s) 20, 432, 725, 1209
AluI AGCT 4 cut(s) 20, 432, 725, 1209
Alw21I GWGCWC 2 cut(s) 301, 434
Alw26I GTCTC 4 cut(s) 174, 178, 248, 1060
Alw44I GTGCAC 1 cut(s) 297
AlwI GGATC 6 cut(s) 52, 904, 917, 1019, 1032, 1136
Aor51HI AGCGCT 1 cut(s) 685
ApaLI GTGCAC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 722, 725
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AsiGI ACCGGT 1 cut(s) 484
Asp700I GAANNNNTTC 1 cut(s) 843
AspLEI GCGC 2 cut(s) 686, 876
AspS9I GGNCC 2 cut(s) 27, 327
AsuHPI GGTGA 5 cut(s) 118, 266, 499, 782, 1120
AvaII GGWCC 2 cut(s) 27, 327
AxyI CCTNAGG 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 301
BamHI GGATCC 2 cut(s) 909, 1024
BanII GRGCYC 1 cut(s) 434
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 301, 434
BbvI GCAGC 2 cut(s) 712, 734
BccI CCATC 3 cut(s) 791, 1054, 1072
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 2 cut(s) 240, 957
BclI TGATCA 1 cut(s) 618
BcoDI GTCTC 4 cut(s) 174, 178, 248, 1060
BfaI CTAG 2 cut(s) 285, 860
BfmI CTRYAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 687
BglII AGATCT 1 cut(s) 1123
BisI GCNGC 3 cut(s) 723, 726, 744
BlsI GCNGC 3 cut(s) 724, 727, 745
BmcAI AGTACT 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 240, 957
Bme18I GGWCC 2 cut(s) 27, 327
BmgT120I GGNCC 2 cut(s) 27, 327
BmiI GGNNCC 3 cut(s) 911, 1026, 1084
BmrFI CCNGG 2 cut(s) 240, 957
BmrI ACTGGG 1 cut(s) 1171
BmsI GCATC 1 cut(s) 769
BmuI ACTGGG 1 cut(s) 1171
BplI GAGNNNNNCTC 1 cut(s) 36
Bsa29I ATCGAT 2 cut(s) 231, 391
BsaI GGTCTC 2 cut(s) 174, 248
BsaJI CCNNGG 1 cut(s) 1182
BsaWI WCCGGW 1 cut(s) 484
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 718
Bse118I RCCGGY 2 cut(s) 116, 484
Bse1I ACTGG 5 cut(s) 996, 1048, 1074, 1166, 1172
Bse21I CCTNAGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 447
BseBI CCWGG 2 cut(s) 240, 957
BseCI ATCGAT 2 cut(s) 231, 391
BseDI CCNNGG 1 cut(s) 1182
BseGI GGATG 2 cut(s) 783, 1192
BseLI CCNNNNNNNGG 2 cut(s) 41, 718
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 4 cut(s) 62, 304, 465, 870
BseNI ACTGG 5 cut(s) 996, 1048, 1074, 1166, 1172
BseRI GAGGAG 4 cut(s) 80, 83, 162, 960
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 2 cut(s) 712, 734
Bsh1236I CGCG 2 cut(s) 874, 977
BshTI ACCGGT 1 cut(s) 484
BshVI ATCGAT 2 cut(s) 231, 391
BsiHKAI GWGCWC 2 cut(s) 301, 434
BsiSI CCGG 2 cut(s) 117, 485
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 2 cut(s) 41, 718
BsmAI GTCTC 4 cut(s) 174, 178, 248, 1060
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 190
Bso31I GGTCTC 2 cut(s) 174, 248
Bsp1286I GDGCHC 2 cut(s) 301, 434
Bsp143I GATC 8 cut(s) 44, 108, 392, 618, 909, 1024, 1123, 1141
Bsp19I CCATGG 1 cut(s) 1182
BspACI CCGC 4 cut(s) 633, 744, 907, 977
BspCNI CTCAG 4 cut(s) 61, 303, 466, 871
BspDI ATCGAT 2 cut(s) 231, 391
BspFNI CGCG 2 cut(s) 874, 977
BspHI TCATGA 1 cut(s) 1056
BspLI GGNNCC 3 cut(s) 911, 1026, 1084
BspPI GGATC 6 cut(s) 52, 904, 917, 1019, 1032, 1136
BspTNI GGTCTC 2 cut(s) 174, 248
BsrDI GCAATG 1 cut(s) 447
BsrFI RCCGGY 2 cut(s) 116, 484
BsrI ACTGG 5 cut(s) 996, 1048, 1074, 1166, 1172
BssAI RCCGGY 2 cut(s) 116, 484
BssECI CCNNGG 1 cut(s) 1182
BssMI GATC 8 cut(s) 44, 108, 392, 618, 909, 1024, 1123, 1141
BssNAI GTATAC 2 cut(s) 383, 1177
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 1182
Bst1107I GTATAC 2 cut(s) 383, 1177
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 240, 957
Bst6I CTCTTC 3 cut(s) 101, 106, 1189
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 265, 1207
BstDEI CTNAG 6 cut(s) 48, 290, 474, 504, 879, 1146
BstDSI CCRYGG 1 cut(s) 1182
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 2 cut(s) 783, 1192
BstFNI CGCG 2 cut(s) 874, 977
BstH2I RGCGCY 1 cut(s) 687
BstHHI GCGC 2 cut(s) 686, 876
BstKTI GATC 8 cut(s) 47, 111, 395, 621, 912, 1027, 1126, 1144
BstMAI GTCTC 4 cut(s) 174, 178, 248, 1060
BstMBI GATC 8 cut(s) 44, 108, 392, 618, 909, 1024, 1123, 1141
BstMWI GCNNNNNNNGC 2 cut(s) 249, 681
BstNI CCWGG 2 cut(s) 240, 957
BstNSI RCATGY 1 cut(s) 566
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 238, 955
BstSFI CTRYAG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 2 cut(s) 874, 977
BstV1I GCAGC 2 cut(s) 712, 734
BstX2I RGATCY 4 cut(s) 44, 909, 1024, 1123
BstYI RGATCY 4 cut(s) 44, 909, 1024, 1123
BstZ17I GTATAC 2 cut(s) 383, 1177
Bsu15I ATCGAT 2 cut(s) 231, 391
Bsu36I CCTNAGG 1 cut(s) 290
BsuTUI ATCGAT 2 cut(s) 231, 391
BtgI CCRYGG 1 cut(s) 1182
BtsCI GGATG 2 cut(s) 783, 1192
Cac8I GCNNGC 2 cut(s) 265, 1207
CciI TCATGA 1 cut(s) 1056
CfoI GCGC 2 cut(s) 686, 876
Cfr10I RCCGGY 2 cut(s) 116, 484
Cfr13I GGNCC 2 cut(s) 27, 327
ClaI ATCGAT 2 cut(s) 231, 391
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 208, 985, 1114
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 7 cut(s) 313, 510, 563, 648, 691, 1057, 1183
CviQI GTAC 3 cut(s) 208, 985, 1114
DdeI CTNAG 6 cut(s) 48, 290, 474, 504, 879, 1146
DpnI GATC 8 cut(s) 46, 110, 394, 620, 911, 1026, 1125, 1143
DpnII GATC 8 cut(s) 44, 108, 392, 618, 909, 1024, 1123, 1141
Eam1104I CTCTTC 3 cut(s) 101, 106, 1189
EarI CTCTTC 3 cut(s) 101, 106, 1189
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 1182
Eco24I GRGCYC 1 cut(s) 434
Eco31I GGTCTC 2 cut(s) 174, 248
Eco47I GGWCC 2 cut(s) 27, 327
Eco47III AGCGCT 1 cut(s) 685
Eco53kI GAGCTC 1 cut(s) 432
Eco81I CCTNAGG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 327
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 238, 955
EcoT14I CCWWGG 1 cut(s) 1182
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 1182
FaeI CATG 7 cut(s) 316, 513, 566, 651, 694, 1060, 1186
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 750, 782
FaqI GGGAC 1 cut(s) 815
FatI CATG 7 cut(s) 312, 509, 562, 647, 690, 1056, 1182
FbaI TGATCA 1 cut(s) 618
FblI GTMKAC 2 cut(s) 382, 1176
Fnu4HI GCNGC 3 cut(s) 723, 726, 744
FokI GGATG 2 cut(s) 770, 1199
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 3 cut(s) 723, 726, 744
FspBI CTAG 2 cut(s) 285, 860
GlaI GCGC 2 cut(s) 685, 875
GluI GCNGC 3 cut(s) 723, 726, 744
HaeII RGCGCY 1 cut(s) 687
HapII CCGG 2 cut(s) 117, 485
HgaI GACGC 1 cut(s) 41
HhaI GCGC 2 cut(s) 686, 876
Hin1II CATG 7 cut(s) 316, 513, 566, 651, 694, 1060, 1186
Hin6I GCGC 2 cut(s) 684, 874
HinP1I GCGC 2 cut(s) 684, 874
HinfI GANTC 9 cut(s) 228, 281, 446, 500, 573, 598, 844, 925, 1018
HpaII CCGG 2 cut(s) 117, 485
HphI GGTGA 5 cut(s) 118, 266, 499, 782, 1120
Hpy166II GTNNAC 3 cut(s) 299, 383, 1177
Hpy188I TCNGA 3 cut(s) 202, 397, 475
Hpy188III TCNNGA 7 cut(s) 42, 345, 616, 860, 1022, 1036, 1057
Hpy8I GTNNAC 3 cut(s) 299, 383, 1177
Hpy99I CGWCG 1 cut(s) 798
HpyAV CCTTC 4 cut(s) 351, 410, 899, 915
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 7 cut(s) 299, 354, 440, 560, 647, 663, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 681
HpyF3I CTNAG 6 cut(s) 48, 290, 474, 504, 879, 1146
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 7 cut(s) 316, 513, 566, 651, 694, 1060, 1186
HspAI GCGC 2 cut(s) 684, 874
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 8 cut(s) 44, 108, 392, 618, 909, 1024, 1123, 1141
LmnI GCTCC 2 cut(s) 429, 1082
Lsp1109I GCAGC 2 cut(s) 712, 734
LweI GCATC 1 cut(s) 769
MaeI CTAG 2 cut(s) 285, 860
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 3 cut(s) 272, 574, 599
MalI GATC 8 cut(s) 46, 110, 394, 620, 911, 1026, 1125, 1143
MboI GATC 8 cut(s) 44, 108, 392, 618, 909, 1024, 1123, 1141
MboII GAAGA 7 cut(s) 88, 93, 317, 490, 1162, 1206, 1211
MflI RGATCY 4 cut(s) 44, 909, 1024, 1123
MhlI GDGCHC 2 cut(s) 301, 434
MluCI AATT 3 cut(s) 122, 731, 1042
MlyI GAGTC 5 cut(s) 440, 494, 582, 607, 919
MmeI TCCRAC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 843
MseI TTAA 4 cut(s) 321, 591, 624, 1133
MslI CAYNNNNRTG 2 cut(s) 533, 567
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 2 cut(s) 117, 485
MspR9I CCNGG 2 cut(s) 240, 957
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 2 cut(s) 240, 957
MvnI CGCG 2 cut(s) 874, 977
MwoI GCNNNNNNNGC 2 cut(s) 249, 681
NcoI CCATGG 1 cut(s) 1182
NdeII GATC 8 cut(s) 44, 108, 392, 618, 909, 1024, 1123, 1141
NlaIII CATG 7 cut(s) 316, 513, 566, 651, 694, 1060, 1186
NlaIV GGNNCC 3 cut(s) 911, 1026, 1084
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 3 cut(s) 272, 574, 599
NspI RCATGY 1 cut(s) 566
PagI TCATGA 1 cut(s) 1056
PciI ACATGT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 4 cut(s) 228, 281, 844, 1018
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 3 cut(s) 724, 727, 745
PleI GAGTC 5 cut(s) 440, 494, 581, 606, 919
PpsI GAGTC 5 cut(s) 440, 494, 581, 606, 919
PpuMI RGGWCCY 1 cut(s) 327
PscI ACATGT 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 238, 955
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 238, 955
PspN4I GGNNCC 3 cut(s) 911, 1026, 1084
PspPI GGNCC 2 cut(s) 27, 327
PspPPI RGGWCCY 1 cut(s) 327
PsuI RGATCY 4 cut(s) 44, 909, 1024, 1123
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 3 cut(s) 209, 986, 1115
RsaNI GTAC 3 cut(s) 208, 985, 1114
RseI CAYNNNNRTG 2 cut(s) 533, 567
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 4 cut(s) 321, 591, 624, 1133
SatI GCNGC 3 cut(s) 723, 726, 744
Sau3AI GATC 8 cut(s) 44, 108, 392, 618, 909, 1024, 1123, 1141
Sau96I GGNCC 2 cut(s) 27, 327
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 5 cut(s) 440, 494, 582, 607, 919
ScrFI CCNGG 2 cut(s) 240, 957
SduI GDGCHC 2 cut(s) 301, 434
SfaNI GCATC 1 cut(s) 769
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 2 cut(s) 27, 327
SmiMI CAYNNNNRTG 2 cut(s) 533, 567
Sse9I AATT 3 cut(s) 122, 731, 1042
SsiI CCGC 4 cut(s) 633, 744, 907, 977
SspMI CTAG 2 cut(s) 285, 860
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 238, 955
StyI CCWWGG 1 cut(s) 1182
TaiI ACGT 1 cut(s) 792
TaqI TCGA 5 cut(s) 153, 231, 391, 1004, 1035
TasI AATT 3 cut(s) 122, 731, 1042
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 4 cut(s) 228, 281, 844, 1018
Tru1I TTAA 4 cut(s) 321, 591, 624, 1133
Tru9I TTAA 4 cut(s) 321, 591, 624, 1133
TseFI GTSAC 3 cut(s) 272, 574, 599
TseI GCWGC 2 cut(s) 722, 725
Tsp45I GTSAC 3 cut(s) 272, 574, 599
TspDTI ATGAA 4 cut(s) 551, 693, 1045, 1203
VneI GTGCAC 1 cut(s) 297
VpaK11BI GGWCC 2 cut(s) 27, 327
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 2 cut(s) 121, 794
XmiI GTMKAC 2 cut(s) 382, 1176
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 2 cut(s) 285, 860
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.