Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010554.1

Orthogroup ID

OG0003834

Physical Location & Seq

Genomic Coordinates Reverse (-)

11827 .. 16032

Gene Structure 4206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010554.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgctgtctccaatgggattgagaagacccccaaagcccaaatctgggcccagttcccccatcatcttcctcgccatctgcatagccgcaattgctctcgtcttcctctattcctatctcagttccaccaatgccttctcttcttcctccctcaaaaccctacagactgtccccaatctgatcaaccacagccacgagaagtacctctactggggtacccgaatcgactgccccggcaagcactgccagtcctgtgagggcctcgcccaccaagagtccagcctccgctgtgctcttgaagaggccatcttcctccgcaggacttttgtaatgccttccagaatgtgcatcaatccaatacacaataagaaagggatctttcatcactcggataatgcaagttcagaagaaaagtttgcggagtgcaagaatcgaaacaaccatagtgctttaattttgccctactcctttctcccctcgagggcagcaaagaaactgaggaatgcagctgagaagattaaggcaatccttggtgattatgatgccattcatgttcgtcgtggagatagacttaagaccaggagggacaggaatggtgttgagaggaccctttcacctcatctggacagggacacacgccctgagtttattctccgcagaattaaaaaatgggtcccacctggacgaactctttacattgcttcaaatgaaaggacaccaggattcttttcacctctctcagtcagatacaaattggcatactcatcaaattatagccacatgttggaacccttgattgagaataactaccaattgttcatgattgaaaggcttatctggatgggtgctaaaacattcattagcacattcaaagaagatgatacagatctccatcttacggacgaccccaagaagaacaccaagaactggcaaataccagtctacaccatggatgaagagggaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

322

Amino Acids

36.98

Weight (kDa)

9.53

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41150 AT2G41150 AT3G56750
fragaria_vesca	FvH4_2g10400 FvH4_2g10400 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880
malus_domestica	MD12G1095500.v1.1 MD14G1091500.v1.1
prunus_persica	Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1
pyrus_communis	pycom12g08230 pycom12g08240 pycom14g08220
rosa_chinensis	RchiOBHm_Chr1g0339511
rosa_laevigata	RLG00000029233
rosa_multiflora	Rmu_sc0010554.1_g000003 Rmu_sc0026504.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313480
rosa_rugosa	Rorug01G0141600.1
rosa_samantha	Rh1AG158800 Rh1CG148100
rosa_wichuraiana	Rw1G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	478
Acc65I	GGTACC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	2 cut(s)	784, 927
AccI	GTMKAC	1 cut(s)	942
AciI	CCGC	5 cut(s)	87, 286, 316, 419, 655
AclWI	GGATC	1 cut(s)	383
AfaI	GTAC	2 cut(s)	203, 217
AfiI	CCNNNNNNNGG	7 cut(s)	44, 45, 211, 481, 784, 898, 927
AflII	CTTAAG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	780
AgsI	TTSAA	4 cut(s)	299, 705, 827, 871
AjnI	CCWGG	3 cut(s)	578, 679, 718
AluBI	AGCT	2 cut(s)	509, 966
AluI	AGCT	2 cut(s)	509, 966
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	3 cut(s)	47, 259, 303
ApaI	GGGCCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	485, 506
Asp718I	GGTACC	1 cut(s)	215
AspS9I	GGNCC	5 cut(s)	47, 48, 259, 606, 673
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	545, 606, 723
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	606, 673
BaeGI	GKGCMC	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	199, 232
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	31, 94
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	497, 518
BccI	CCATC	5 cut(s)	68, 83, 314, 835, 900
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	3 cut(s)	580, 681, 720
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	161
BfrI	CTTAAG	1 cut(s)	572
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	3 cut(s)	87, 486, 507
BlsI	GCNGC	3 cut(s)	88, 487, 508
Bme1390I	CCNGG	4 cut(s)	234, 580, 681, 720
Bme18I	GGWCC	2 cut(s)	606, 673
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	5 cut(s)	47, 48, 259, 606, 673
BmiI	GGNNCC	6 cut(s)	49, 217, 608, 674, 675, 789
BmrFI	CCNGG	4 cut(s)	234, 580, 681, 720
BmrI	ACTGGG	2 cut(s)	45, 220
BmsI	GCATC	2 cut(s)	357, 532
BmuI	ACTGGG	2 cut(s)	45, 220
BpiI	GAAGAC	2 cut(s)	31, 94
BpuMI	CCSGG	1 cut(s)	234
BsaBI	GATNNNNATC	2 cut(s)	885, 891
BsaJI	CCNNGG	3 cut(s)	232, 529, 948
Bsc4I	CCNNNNNNNGG	7 cut(s)	44, 45, 211, 481, 784, 898, 927
Bse1I	ACTGG	5 cut(s)	51, 215, 247, 932, 938
Bse3DI	GCAATG	1 cut(s)	696
Bse8I	GATNNNNATC	2 cut(s)	885, 891
BseBI	CCWGG	3 cut(s)	580, 681, 720
BseDI	CCNNGG	3 cut(s)	232, 529, 948
BseGI	GGATG	2 cut(s)	846, 958
BseJI	GATNNNNATC	2 cut(s)	885, 891
BseLI	CCNNNNNNNGG	7 cut(s)	44, 45, 211, 481, 784, 898, 927
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	5 cut(s)	133, 488, 501, 633, 753
BseNI	ACTGG	5 cut(s)	51, 215, 247, 932, 938
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	497, 518
BshFI	GGCC	3 cut(s)	49, 261, 305
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	4 cut(s)	155, 599, 644, 659
BslI	CCNNNNNNNGG	7 cut(s)	44, 45, 211, 481, 784, 898, 927
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	4 cut(s)	155, 599, 644, 659
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	3 cut(s)	49, 261, 305
BsoBI	CYCGRG	1 cut(s)	478
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	51, 295
Bsp143I	GATC	3 cut(s)	180, 375, 886
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	5 cut(s)	87, 286, 316, 419, 655
BspANI	GGCC	3 cut(s)	49, 261, 305
BspCNI	CTCAG	5 cut(s)	132, 489, 502, 634, 752
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	6 cut(s)	49, 217, 608, 674, 675, 789
BspPI	GGATC	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	215
BspTI	CTTAAG	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	5 cut(s)	51, 215, 247, 932, 938
BssECI	CCNNGG	3 cut(s)	232, 529, 948
BssMI	GATC	3 cut(s)	180, 375, 886
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	2 cut(s)	529, 948
Bst2BI	CACGAG	1 cut(s)	194
Bst2UI	CCWGG	3 cut(s)	580, 681, 720
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	3 cut(s)	145, 294, 951
BstAFI	CTTAAG	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	5 cut(s)	119, 497, 510, 642, 739
BstDSI	CCRYGG	1 cut(s)	948
BstF5I	GGATG	2 cut(s)	846, 958
BstKTI	GATC	3 cut(s)	183, 378, 889
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	180, 375, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 243
BstNI	CCWGG	3 cut(s)	580, 681, 720
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	4 cut(s)	232, 578, 679, 718
BstSFI	CTRYAG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	497, 518
BstV2I	GAAGAC	2 cut(s)	31, 94
BstX2I	RGATCY	2 cut(s)	375, 886
BstYI	RGATCY	2 cut(s)	375, 886
BsuRI	GGCC	3 cut(s)	49, 261, 305
BtgI	CCRYGG	1 cut(s)	948
BtsCI	GGATG	2 cut(s)	846, 958
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	239
CciI	TCATGA	1 cut(s)	819
Cfr13I	GGNCC	5 cut(s)	47, 48, 259, 606, 673
Csp6I	GTAC	2 cut(s)	202, 216
CviAII	CATG	4 cut(s)	551, 781, 820, 949
CviQI	GTAC	2 cut(s)	202, 216
DdeI	CTNAG	5 cut(s)	119, 497, 510, 642, 739
DpnI	GATC	3 cut(s)	182, 377, 888
DpnII	GATC	3 cut(s)	180, 375, 886
Eam1104I	CTCTTC	3 cut(s)	145, 294, 951
EarI	CTCTTC	3 cut(s)	145, 294, 951
Eco130I	CCWWGG	2 cut(s)	529, 948
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	606, 673
Eco88I	CYCGRG	1 cut(s)	478
EcoO109I	RGGNCCY	3 cut(s)	259, 606, 673
EcoRII	CCWGG	3 cut(s)	578, 679, 718
EcoT14I	CCWWGG	2 cut(s)	529, 948
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	529, 948
FaeI	CATG	4 cut(s)	554, 784, 823, 952
FaiI	YATR	9 cut(s)	83, 444, 540, 552, 760, 774, 782, 821, 950
FaqI	GGGAC	4 cut(s)	155, 599, 644, 659
FatI	CATG	4 cut(s)	550, 780, 819, 948
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	3 cut(s)	87, 486, 507
FokI	GGATG	2 cut(s)	853, 965
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	3 cut(s)	87, 486, 507
GluI	GCNGC	3 cut(s)	87, 486, 507
HaeIII	GGCC	3 cut(s)	49, 261, 305
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	4 cut(s)	554, 784, 823, 952
HinfI	GANTC	4 cut(s)	222, 275, 430, 723
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	3 cut(s)	545, 606, 723
Hpy166II	GTNNAC	1 cut(s)	943
Hpy188I	TCNGA	4 cut(s)	180, 391, 406, 746
Hpy188III	TCNNGA	5 cut(s)	296, 339, 623, 820, 838
Hpy8I	GTNNAC	1 cut(s)	943
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	2 cut(s)	145, 345
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	5 cut(s)	81, 348, 398, 426, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 243
HpyF3I	CTNAG	5 cut(s)	119, 497, 510, 642, 739
Hsp92II	CATG	4 cut(s)	554, 784, 823, 952
KflI	GGGWCCC	1 cut(s)	673
KpnI	GGTACC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	180, 375, 886
Lsp1109I	GCAGC	2 cut(s)	497, 518
LweI	GCATC	2 cut(s)	357, 532
MalI	GATC	3 cut(s)	182, 377, 888
MboI	GATC	3 cut(s)	180, 375, 886
MfeI	CAATTG	2 cut(s)	90, 812
MflI	RGATCY	2 cut(s)	375, 886
MhlI	GDGCHC	2 cut(s)	51, 295
MluCI	AATT	6 cut(s)	90, 453, 660, 752, 769, 812
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	765
MseI	TTAA	4 cut(s)	452, 519, 573, 663
MspA1I	CMGCKG	2 cut(s)	288, 509
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	4 cut(s)	234, 580, 681, 720
MunI	CAATTG	2 cut(s)	90, 812
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	3 cut(s)	580, 681, 720
MwoI	GCNNNNNNNGC	2 cut(s)	92, 243
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	948
NdeII	GATC	3 cut(s)	180, 375, 886
NlaIII	CATG	4 cut(s)	554, 784, 823, 952
NlaIV	GGNNCC	6 cut(s)	49, 217, 608, 674, 675, 789
NspI	RCATGY	1 cut(s)	784
PaeR7I	CTCGAG	1 cut(s)	478
PagI	TCATGA	1 cut(s)	819
PciI	ACATGT	1 cut(s)	780
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	222, 430, 723
PflMI	CCANNNNNTGG	2 cut(s)	784, 927
PkrI	GCNGC	3 cut(s)	88, 487, 508
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	2 cut(s)	606, 673
PscI	ACATGT	1 cut(s)	780
Psp5II	RGGWCCY	2 cut(s)	606, 673
Psp6I	CCWGG	3 cut(s)	578, 679, 718
PspGI	CCWGG	3 cut(s)	578, 679, 718
PspN4I	GGNNCC	6 cut(s)	49, 217, 608, 674, 675, 789
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	5 cut(s)	47, 48, 259, 606, 673
PspPPI	RGGWCCY	2 cut(s)	606, 673
PspXI	VCTCGAGB	1 cut(s)	478
PsuI	RGATCY	2 cut(s)	375, 886
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	203, 217
RsaNI	GTAC	2 cut(s)	202, 216
SaqAI	TTAA	4 cut(s)	452, 519, 573, 663
SatI	GCNGC	3 cut(s)	87, 486, 507
Sau3AI	GATC	3 cut(s)	180, 375, 886
Sau96I	GGNCC	5 cut(s)	47, 48, 259, 606, 673
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	4 cut(s)	234, 580, 681, 720
SduI	GDGCHC	2 cut(s)	51, 295
SetI	ASST	6 cut(s)	207, 511, 619, 682, 736, 968
SfaNI	GCATC	2 cut(s)	357, 532
SfcI	CTRYAG	1 cut(s)	161
Sfr274I	CTCGAG	1 cut(s)	478
SinI	GGWCC	2 cut(s)	606, 673
SlaI	CTCGAG	1 cut(s)	478
SmlI	CTYRAG	2 cut(s)	478, 572
SmoI	CTYRAG	2 cut(s)	478, 572
Sse9I	AATT	6 cut(s)	90, 453, 660, 752, 769, 812
SsiI	CCGC	5 cut(s)	87, 286, 316, 419, 655
StyD4I	CCNGG	4 cut(s)	232, 578, 679, 718
StyI	CCWWGG	2 cut(s)	529, 948
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	3 cut(s)	225, 433, 479
TasI	AATT	6 cut(s)	90, 453, 660, 752, 769, 812
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	222, 430, 723
Tru1I	TTAA	4 cut(s)	452, 519, 573, 663
Tru9I	TTAA	4 cut(s)	452, 519, 573, 663
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	2 cut(s)	485, 506
TspDTI	ATGAA	6 cut(s)	371, 539, 723, 808, 847, 969
TspGWI	ACGGA	1 cut(s)	914
TspRI	CASTG	1 cut(s)	248
Van91I	CCANNNNNTGG	2 cut(s)	784, 927
Vha464I	CTTAAG	1 cut(s)	572
VpaK11BI	GGWCC	2 cut(s)	606, 673
XceI	RCATGY	1 cut(s)	784
XhoI	CTCGAG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.