Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003834

Physical Location & Seq

Genomic Coordinates Forward (+)

9325884 .. 9327082

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCATTTCCTAGAACCCAAAAGTCCAAACCAGGACCTAGTTCCCCAATCATATTCCTTGCCATCTGCATAGCTGCCATTGCACTCCTCTTCCTCTTTTCCTCTCTCATATCCACTAGTGGGTTCTATATATCCTCTCCAAAAATCCTAGAAAGCATGCCCGAAGACAAGTACAAGAGCCAAAACCACCAAAGTGGCCATGAGAAATACCTCTACTGGGGTGACAGAATTGATTGCCCTGGAAAACACTGCAAGTCTTGTGCAGGATTGGGCCACCAGGAGTCCAGCCTTAGGTGTGCTCTTGAAGAGGCCATGTTCCTTCAGAGAACTTTTGTAATGCCTTCGAGAATGTGTCTCAACCCAATGCACAATAAGAAAGCAATCGTTCATCACTCAAATGATGGAATTTCAGAAGAAAGGGGCAGCAAACTCTTGTTCCATGGAATCTTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

152

Amino Acids

16.9

Weight (kDa)

8.94

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41150 AT2G41150 AT3G56750
fragaria_vesca	FvH4_2g10400 FvH4_2g10400 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880
malus_domestica	MD12G1095500.v1.1 MD14G1091500.v1.1
prunus_persica	Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1
pyrus_communis	pycom12g08230 pycom12g08240 pycom14g08220
rosa_chinensis	RchiOBHm_Chr1g0339511
rosa_laevigata	RLG00000029233
rosa_multiflora	Rmu_sc0010554.1_g000003 Rmu_sc0026504.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313480
rosa_rugosa	Rorug01G0141600.1
rosa_samantha	Rh1AG158800 Rh1CG148100
rosa_wichuraiana	Rw1G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	120, 217, 291
AgsI	TTSAA	1 cut(s)	305
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	3 cut(s)	31, 238, 276
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	359
AoxI	GGCC	3 cut(s)	196, 271, 309
ApeKI	GCWGC	2 cut(s)	74, 423
ApoI	RAATTY	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	35, 271
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	35
AxyI	CCTNAGG	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	61, 435
BccI	CCATC	2 cut(s)	71, 395
BciT130I	CCWGG	3 cut(s)	33, 240, 278
BcoDI	GTCTC	1 cut(s)	359
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	4 cut(s)	12, 39, 117, 149
BisI	GCNGC	2 cut(s)	75, 424
BlsI	GCNGC	2 cut(s)	76, 425
Bme1390I	CCNGG	3 cut(s)	33, 240, 278
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 271
BmrFI	CCNGG	3 cut(s)	33, 240, 278
BmrI	ACTGGG	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	238, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 217, 291
Bse1I	ACTGG	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	3 cut(s)	33, 240, 278
BseDI	CCNNGG	2 cut(s)	238, 439
BseLI	CCNNNNNNNGG	3 cut(s)	120, 217, 291
BseMI	GCAATG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	61, 435
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	198, 273, 311
BsiHKAI	GWGCWC	1 cut(s)	301
BslI	CCNNNNNNNGG	3 cut(s)	120, 217, 291
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	3 cut(s)	198, 273, 311
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp19I	CCATGG	1 cut(s)	439
BspANI	GGCC	3 cut(s)	198, 273, 311
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	238, 439
BssT1I	CCWWGG	1 cut(s)	439
Bst2UI	CCWGG	3 cut(s)	33, 240, 278
Bst6I	CTCTTC	2 cut(s)	95, 300
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	439
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	3 cut(s)	33, 240, 278
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	3 cut(s)	31, 238, 276
BstV1I	GCAGC	2 cut(s)	61, 435
BstV2I	GAAGAC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	198, 273, 311
BtgI	CCRYGG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	35, 271
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	4 cut(s)	157, 200, 313, 440
CviJI	RGCY	6 cut(s)	74, 180, 198, 273, 288, 311
CviKI_1	RGCY	6 cut(s)	74, 180, 198, 273, 288, 311
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	95, 300
EarI	CTCTTC	2 cut(s)	95, 300
Eco130I	CCWWGG	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	31, 238, 276
EcoT14I	CCWWGG	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	4 cut(s)	160, 203, 316, 443
FatI	CATG	4 cut(s)	156, 199, 312, 439
Fnu4HI	GCNGC	2 cut(s)	75, 424
Fsp4HI	GCNGC	2 cut(s)	75, 424
FspBI	CTAG	4 cut(s)	12, 39, 117, 149
GluI	GCNGC	2 cut(s)	75, 424
HaeIII	GGCC	3 cut(s)	198, 273, 311
Hin1II	CATG	4 cut(s)	160, 203, 316, 443
HinfI	GANTC	2 cut(s)	281, 444
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	324, 412
Hpy188III	TCNNGA	2 cut(s)	302, 345
HpyAV	CCTTC	2 cut(s)	329, 351
HpyCH4V	TGCA	5 cut(s)	69, 83, 252, 263, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	4 cut(s)	160, 203, 316, 443
LpnPI	CCDG	9 cut(s)	18, 45, 202, 225, 249, 252, 263, 290, 298
Lsp1109I	GCAGC	2 cut(s)	61, 435
MaeI	CTAG	4 cut(s)	12, 39, 117, 149
MaeIII	GTNAC	1 cut(s)	221
MboII	GAAGA	4 cut(s)	82, 176, 317, 425
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	2 cut(s)	228, 405
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	98, 104, 112, 145, 221, 301
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
MslI	CAYNNNNRTG	2 cut(s)	192, 396
Msp20I	TGGCCA	1 cut(s)	198
MspR9I	CCNGG	3 cut(s)	33, 240, 278
MvaI	CCWGG	3 cut(s)	33, 240, 278
MwoI	GCNNNNNNNGC	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	439
NlaIII	CATG	4 cut(s)	160, 203, 316, 443
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	160
OliI	CACNNNNGTG	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	76, 425
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	3 cut(s)	31, 238, 276
PspGI	CCWGG	3 cut(s)	31, 238, 276
PspPI	GGNCC	2 cut(s)	35, 271
PspPPI	RGGWCCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	2 cut(s)	192, 396
SatI	GCNGC	2 cut(s)	75, 424
Sau96I	GGNCC	2 cut(s)	35, 271
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	3 cut(s)	33, 240, 278
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	4 cut(s)	40, 76, 213, 296
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	192, 396
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	2 cut(s)	228, 405
SspMI	CTAG	4 cut(s)	12, 39, 117, 149
StyD4I	CCNGG	3 cut(s)	31, 238, 276
StyI	CCWWGG	1 cut(s)	439
TaqI	TCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	228, 405
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	444
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	74, 423
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	4 cut(s)	12, 39, 117, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.