Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003834

Physical Location & Seq

Genomic Coordinates Forward (+)

9327187 .. 9331078

Gene Structure 3892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTGGAAGGAGTTAGTCGTGTTGATCGATCAAAGAAAACAGTCGTTTCTCAAATCTTTTAATCATAAACAGAACTGCAAGCCCTCTCTCATGAGGTTTATGGAGTGCAAGGACCGAAAAAATAGTAGTGCTATAATTTTGCCTCACTCCTTTCTTCCCTCAATGGTGGCAAAGAAGCTAAGGAATGCAGCTGATGAGATTAAGGAACTCCTTGGTGATTATGATGCCATTCATGTTCGTCGTGGTGATATAATAAAGACCAGGAAGGACAGGTTTGGCATCAACAGGACCCTGCATCCTCATGTGGACAGGGATACTCACCCTGAGTTTATTCTCCGCAGAATTGAAAAATGGGTCCCATCTGGACGAACTCTTTATATTGCTTCAAATGAAAGGACACCGGGCTTTTTTTCACTTCTCTCAGTCAGATACAAATTGGCGTATTCGTCAAACTATAGCCACATCTTGGAGCCTGTGATTGAGAATAACTACCAGTTGTTCATGATTGAGAGGCTTATCATGACAGGTGCTAAAACGTTCATCAACACATTTAAAGAAGATGATACAGATCTCAGTCTTACTGATGACCGAAAGAAGAACACCAAGGTGTGGCAAATACCAGTTTATACCATGGATGAAGAGGGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

217

Amino Acids

25.45

Weight (kDa)

9.43

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41150 AT2G41150 AT3G56750
fragaria_vesca	FvH4_2g10400 FvH4_2g10400 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880
malus_domestica	MD12G1095500.v1.1 MD14G1091500.v1.1
prunus_persica	Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1
pyrus_communis	pycom12g08230 pycom12g08240 pycom14g08220
rosa_chinensis	RchiOBHm_Chr1g0339511
rosa_laevigata	RLG00000029233
rosa_multiflora	Rmu_sc0010554.1_g000003 Rmu_sc0026504.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313480
rosa_rugosa	Rorug01G0141600.1
rosa_samantha	Rh1AG158800 Rh1CG148100
rosa_wichuraiana	Rw1G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	466, 609
AciI	CCGC	1 cut(s)	337
AclI	AACGTT	1 cut(s)	536
AfiI	CCNNNNNNNGG	2 cut(s)	466, 609
AgsI	TTSAA	2 cut(s)	347, 387
AjnI	CCWGG	1 cut(s)	260
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	2 cut(s)	178, 191
AluI	AGCT	2 cut(s)	178, 191
ApeKI	GCWGC	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	112, 288, 355
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	3 cut(s)	227, 257, 311
AvaII	GGWCC	3 cut(s)	112, 288, 355
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	307
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	262, 402
Bme18I	GGWCC	3 cut(s)	112, 288, 355
BmgT120I	GGNCC	3 cut(s)	112, 288, 355
BmiI	GGNNCC	5 cut(s)	290, 356, 357, 471, 646
BmrFI	CCNGG	2 cut(s)	262, 402
BmsI	GCATC	3 cut(s)	214, 288, 304
Bpu10I	CCTNAGC	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	402
Bsa29I	ATCGAT	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	211, 603, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 609
Bse1I	ACTGG	2 cut(s)	493, 620
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	211, 603, 630
BseGI	GGATG	2 cut(s)	295, 640
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	2 cut(s)	466, 609
BseMII	CTCAG	3 cut(s)	315, 435, 586
BseNI	ACTGG	2 cut(s)	493, 620
BseXI	GCAGC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	466, 609
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	24, 28, 568
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	3 cut(s)	316, 434, 585
BspDI	ATCGAT	1 cut(s)	27
BspHI	TCATGA	3 cut(s)	90, 501, 519
BspLI	GGNNCC	5 cut(s)	290, 356, 357, 471, 646
BsrI	ACTGG	2 cut(s)	493, 620
BssECI	CCNNGG	3 cut(s)	211, 603, 630
BssMI	GATC	3 cut(s)	24, 28, 568
BssT1I	CCWWGG	3 cut(s)	211, 603, 630
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	4 cut(s)	179, 324, 421, 572
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	2 cut(s)	295, 640
BstKTI	GATC	3 cut(s)	27, 31, 571
BstMBI	GATC	3 cut(s)	24, 28, 568
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	260, 400
BstSFI	CTRYAG	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	307
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	295, 640
Cac8I	GCNNGC	1 cut(s)	80
CciI	TCATGA	3 cut(s)	90, 501, 519
Cfr13I	GGNCC	3 cut(s)	112, 288, 355
ClaI	ATCGAT	1 cut(s)	27
CviAII	CATG	6 cut(s)	91, 233, 302, 502, 520, 631
CviJI	RGCY	7 cut(s)	82, 178, 191, 405, 459, 472, 514
CviKI_1	RGCY	7 cut(s)	82, 178, 191, 405, 459, 472, 514
DdeI	CTNAG	4 cut(s)	179, 324, 421, 572
DpnI	GATC	3 cut(s)	26, 30, 570
DpnII	GATC	3 cut(s)	24, 28, 568
DraI	TTTAAA	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco130I	CCWWGG	3 cut(s)	211, 603, 630
Eco47I	GGWCC	3 cut(s)	112, 288, 355
EcoO109I	RGGNCCY	2 cut(s)	288, 355
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	3 cut(s)	211, 603, 630
ErhI	CCWWGG	3 cut(s)	211, 603, 630
FaeI	CATG	6 cut(s)	94, 236, 305, 505, 523, 634
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	6 cut(s)	90, 232, 301, 501, 519, 630
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	2 cut(s)	282, 647
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	6 cut(s)	94, 236, 305, 505, 523, 634
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	3 cut(s)	227, 257, 311
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	4 cut(s)	91, 363, 502, 520
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	4 cut(s)	78, 108, 188, 295
HpyF3I	CTNAG	4 cut(s)	179, 324, 421, 572
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	6 cut(s)	94, 236, 305, 505, 523, 634
KflI	GGGWCCC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	24, 28, 568
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	3 cut(s)	214, 288, 304
MaeII	ACGT	1 cut(s)	536
MalI	GATC	3 cut(s)	26, 30, 570
MboI	GATC	3 cut(s)	24, 28, 568
MboII	GAAGA	4 cut(s)	146, 569, 607, 650
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	3 cut(s)	135, 342, 434
MnlI	CCTC	7 cut(s)	87, 94, 153, 169, 309, 504, 634
MseI	TTAA	3 cut(s)	60, 201, 552
MslI	CAYNNNNRTG	2 cut(s)	300, 605
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	262, 402
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	262
NciI	CCSGG	1 cut(s)	402
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	3 cut(s)	24, 28, 568
NlaIII	CATG	6 cut(s)	94, 236, 305, 505, 523, 634
NlaIV	GGNNCC	5 cut(s)	290, 356, 357, 471, 646
OliI	CACNNNNGTG	1 cut(s)	605
PagI	TCATGA	3 cut(s)	90, 501, 519
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	190
PflMI	CCANNNNNTGG	2 cut(s)	466, 609
PkrI	GCNGC	1 cut(s)	190
PpuMI	RGGWCCY	2 cut(s)	288, 355
Psp1406I	AACGTT	1 cut(s)	536
Psp5II	RGGWCCY	2 cut(s)	288, 355
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	5 cut(s)	290, 356, 357, 471, 646
PspPI	GGNCC	3 cut(s)	112, 288, 355
PspPPI	RGGWCCY	2 cut(s)	288, 355
PsuI	RGATCY	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	191
RseI	CAYNNNNRTG	2 cut(s)	300, 605
SaqAI	TTAA	3 cut(s)	60, 201, 552
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	24, 28, 568
Sau96I	GGNCC	3 cut(s)	112, 288, 355
ScrFI	CCNGG	2 cut(s)	262, 402
SetI	ASST	8 cut(s)	98, 180, 193, 275, 529, 539, 609, 650
SfaNI	GCATC	3 cut(s)	214, 288, 304
SfcI	CTRYAG	1 cut(s)	454
SinI	GGWCC	3 cut(s)	112, 288, 355
SmiMI	CAYNNNNRTG	2 cut(s)	300, 605
Sse9I	AATT	3 cut(s)	135, 342, 434
SsiI	CCGC	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	260, 400
StyI	CCWWGG	3 cut(s)	211, 603, 630
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	1 cut(s)	27
TaqII	GACCGA	2 cut(s)	129, 603
TasI	AATT	3 cut(s)	135, 342, 434
Tru1I	TTAA	3 cut(s)	60, 201, 552
Tru9I	TTAA	3 cut(s)	60, 201, 552
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	5 cut(s)	221, 405, 490, 529, 651
Van91I	CCANNNNNTGG	2 cut(s)	466, 609
VpaK11BI	GGWCC	3 cut(s)	112, 288, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.